Index

_

__init__() (nitime.analysis.BaseAnalyzer method) (nitime.analysis.CoherenceAnalyzer method) (nitime.analysis.CorrelationAnalyzer method) (nitime.analysis.EventRelatedAnalyzer method) (nitime.analysis.FilterAnalyzer method) (nitime.analysis.HilbertAnalyzer method) (nitime.analysis.MTCoherenceAnalyzer method) (nitime.analysis.MorletWaveletAnalyzer method) (nitime.analysis.NormalizationAnalyzer method) (nitime.analysis.SNRAnalyzer method) (nitime.analysis.SeedCoherenceAnalyzer method) (nitime.analysis.SparseCoherenceAnalyzer method) (nitime.analysis.SpectralAnalyzer method) (nitime.descriptors.OneTimeProperty method) (nitime.descriptors.ResetMixin method) (nitime.timeseries.Epochs method) (nitime.timeseries.Events method) (nitime.timeseries.Frequency method) (nitime.timeseries.TimeArray method) (nitime.timeseries.TimeInterface method) (nitime.timeseries.TimeSeries method) (nitime.timeseries.TimeSeriesBase method) (nitime.timeseries.TimeSeriesInterface method) (nitime.timeseries.UniformTime method)

A

adaptive_weights() (in module nitime.utils) akaike_information_criterion() (in module nitime.utils) akaike_information_criterion_c() (in module nitime.utils) amplitude() (nitime.analysis.HilbertAnalyzer static method) (nitime.analysis.MorletWaveletAnalyzer static method) analytic() (nitime.analysis.HilbertAnalyzer static method) (nitime.analysis.MorletWaveletAnalyzer static method) antisymm_rand_arr() (in module nitime.utils)

ar_generator() (in module nitime.utils) at() (nitime.timeseries.TimeArray method) (nitime.timeseries.TimeSeries method) (nitime.timeseries.UniformTime method) auto_attr() (in module nitime.descriptors) autocorr() (in module nitime.utils) autocov() (in module nitime.utils)

B

BaseAnalyzer (class in nitime.analysis) bayesian_information_criterion() (in module nitime.utils)

boxcar_filter() (in module nitime.algorithms)

C

cache() (nitime.analysis.SparseCoherenceAnalyzer static method) cache_fft() (in module nitime.algorithms) cache_to_coherency() (in module nitime.algorithms) cache_to_phase() (in module nitime.algorithms) cache_to_psd() (in module nitime.algorithms) cache_to_relative_phase() (in module nitime.algorithms) circle_to_hz() (in module nitime.utils) circularize() (in module nitime.utils) coherence() (in module nitime.algorithms) (nitime.analysis.CoherenceAnalyzer static method) (nitime.analysis.MTCoherenceAnalyzer static method) (nitime.analysis.SeedCoherenceAnalyzer static method) (nitime.analysis.SparseCoherenceAnalyzer static method) coherence_bavg() (in module nitime.algorithms) coherence_bavg_calculate() (in module nitime.algorithms) coherence_calculate() (in module nitime.algorithms) coherence_partial() (in module nitime.algorithms) (nitime.analysis.CoherenceAnalyzer static method) coherence_partial_bavg() (in module nitime.algorithms) coherence_partial_bavg_calculate() (in module nitime.algorithms) coherence_partial_calculate() (in module nitime.algorithms) coherence_regularized() (in module nitime.algorithms) coherence_reqularized_calculate() (in module nitime.algorithms) CoherenceAnalyzer (class in nitime.analysis) coherency() (in module nitime.algorithms) (nitime.analysis.CoherenceAnalyzer static method) (nitime.analysis.SeedCoherenceAnalyzer static method) (nitime.analysis.SparseCoherenceAnalyzer static method) coherency_bavg() (in module nitime.algorithms)

coherency_bavg_calculate() (in module nitime.algorithms) coherency_calculate() (in module nitime.algorithms) coherency_phase_delay() (in module nitime.algorithms) coherency_phase_delay_bavg() (in module nitime.algorithms) coherency_phase_delay_bavg_calculate() (in module nitime.algorithms) coherency_phase_delay_calculate() (in module nitime.algorithms) coherency_phase_spectrum() (in module nitime.algorithms) coherency_phase_spectrum_calculate() (in module nitime.algorithms) coherency_regularized() (in module nitime.algorithms) coherency_reqularized_calculate() (in module nitime.algorithms) concatenate_time_series() (in module nitime.timeseries) confidence_interval() (nitime.analysis.MTCoherenceAnalyzer static method) convert_unit() (nitime.timeseries.TimeArray method) corrcoef() (nitime.analysis.CorrelationAnalyzer static method) correlation() (nitime.analysis.SNRAnalyzer static method) correlation_spectrum() (in module nitime.algorithms) CorrelationAnalyzer (class in nitime.analysis) cpsd() (nitime.analysis.SpectralAnalyzer static method) crosscorr() (in module nitime.utils) crosscov() (in module nitime.utils)

D

data (nitime.timeseries.TimeSeriesBase attribute) delay() (nitime.analysis.CoherenceAnalyzer static method) (nitime.analysis.SeedCoherenceAnalyzer static method) (nitime.analysis.SparseCoherenceAnalyzer static method) df() (nitime.analysis.MTCoherenceAnalyzer static method) diag_indices() (in module nitime.utils) diag_indices_from() (in module nitime.utils) DPSS_windows() (in module nitime.algorithms) draw_arrows() (in module nitime.viz)

draw_graph() (in module nitime.viz) draw_matrix() (in module nitime.viz) draw_networkx_edges() (in module nitime.viz) drawgraph_channels() (in module nitime.viz) drawmatrix_channels() (in module nitime.viz) duration() (nitime.timeseries.Epochs static method) during() (nitime.timeseries.TimeArray method) (nitime.timeseries.TimeSeries method) (nitime.timeseries.UniformTime method)

E

eigs() (nitime.analysis.MTCoherenceAnalyzer static method) Epochs (class in nitime.timeseries) et_data() (nitime.analysis.EventRelatedAnalyzer static method) eta() (nitime.analysis.EventRelatedAnalyzer static method)

ets() (nitime.analysis.EventRelatedAnalyzer static method) EventRelatedAnalyzer (class in nitime.analysis) Events (class in nitime.timeseries)

F

fftconvolve() (in module nitime.utils) fill_diagonal() (in module nitime.utils) FilterAnalyzer (class in nitime.analysis) filtered_boxcar() (nitime.analysis.FilterAnalyzer static method) filtered_fourier() (nitime.analysis.FilterAnalyzer static method) fir() (in module nitime.algorithms) FIR() (nitime.analysis.EventRelatedAnalyzer static method)

fir_design_matrix() (in module nitime.utils) FIR_estimate() (nitime.analysis.EventRelatedAnalyzer static method) freq_domain_xcorr() (in module nitime.algorithms) freq_domain_xcorr_zscored() (in module nitime.algorithms) frequencies() (nitime.analysis.CoherenceAnalyzer static method) (nitime.analysis.MTCoherenceAnalyzer static method) (nitime.analysis.SeedCoherenceAnalyzer static method) (nitime.analysis.SparseCoherenceAnalyzer static method) Frequency (class in nitime.timeseries) from_time_and_data() (nitime.timeseries.TimeSeries static method)

G

gamma_hrf() (in module nitime.fmri.hrf) gauss_white_noise() (in module nitime.algorithms) get_bounds() (in module nitime.utils)

get_freqs() (in module nitime.utils) get_spectra() (in module nitime.algorithms) get_spectra_bi() (in module nitime.algorithms)

H

hanning_window_spectrum() (in module nitime.utils) hilbert_from_new_scipy() (in module nitime.utils)

HilbertAnalyzer (class in nitime.analysis)

I

imag() (nitime.analysis.HilbertAnalyzer static method) (nitime.analysis.MorletWaveletAnalyzer static method) index_at() (nitime.timeseries.TimeArray method) (nitime.timeseries.UniformTime method)

intersect_coords() (in module nitime.utils)

J

jackknifed_coh_variance() (in module nitime.utils)

jackknifed_sdf_variance() (in module nitime.utils)

L

lab2node() (in module nitime.viz)

LD_AR_est() (in module nitime.algorithms)

M

mask_indices() (in module nitime.utils) matshow_tseries() (in module nitime.viz) max() (nitime.timeseries.TimeArray method) (nitime.timeseries.UniformTime method) min() (nitime.timeseries.UniformTime method) minmax_norm() (in module nitime.utils) mkgraph() (in module nitime.viz) MorletWaveletAnalyzer (class in nitime.analysis) mt_coherence() (nitime.analysis.SNRAnalyzer static method) mt_frequencies() (nitime.analysis.SNRAnalyzer static method) mt_information() (nitime.analysis.SNRAnalyzer static method)

mt_noise_psd() (nitime.analysis.SNRAnalyzer static method) mt_signal_psd() (nitime.analysis.SNRAnalyzer static method) mt_snr() (nitime.analysis.SNRAnalyzer static method) MTCoherenceAnalyzer (class in nitime.analysis) mtm_cross_spectrum() (in module nitime.algorithms) multi_intersect() (in module nitime.utils) multi_taper_csd() (in module nitime.algorithms) multi_taper_psd() (in module nitime.algorithms) my_freqz() (in module nitime.algorithms)

N

nifti_from_time_series() (in module nitime.fmri.io) nitime.algorithms (module) nitime.analysis (module) nitime.descriptors (module) nitime.fmri.hrf (module) nitime.fmri.io (module) nitime.testlib (module)

nitime.timeseries (module) nitime.utils (module) nitime.viz (module) noise_covariance_matrix() (in module nitime.utils) normal_coherence_to_unit() (in module nitime.utils) NormalizationAnalyzer (class in nitime.analysis) normalize_coherence() (in module nitime.utils)

O

OneTimeProperty (class in nitime.descriptors)

P

parameterlist() (nitime.analysis.BaseAnalyzer static method) parameters (nitime.analysis.BaseAnalyzer attribute) percent_change() (in module nitime.utils) (nitime.analysis.NormalizationAnalyzer static method) periodogram() (in module nitime.algorithms) (nitime.analysis.SpectralAnalyzer static method) periodogram_csd() (in module nitime.algorithms) phase() (nitime.analysis.CoherenceAnalyzer static method) (nitime.analysis.HilbertAnalyzer static method) (nitime.analysis.MorletWaveletAnalyzer static method) phases() (nitime.analysis.SparseCoherenceAnalyzer static method) plot_corr_diff() (in module nitime.viz)

plot_snr() (in module nitime.viz) plot_snr_diff() (in module nitime.viz) plot_spectral_estimate() (in module nitime.viz) plot_tseries() (in module nitime.viz) plot_xcorr() (in module nitime.viz) polonsky_hrf() (in module nitime.fmri.hrf) psd() (nitime.analysis.SpectralAnalyzer static method)

R

real() (nitime.analysis.HilbertAnalyzer static method) (nitime.analysis.MorletWaveletAnalyzer static method) relative_phases() (nitime.analysis.SeedCoherenceAnalyzer static method) (nitime.analysis.SparseCoherenceAnalyzer static method) remove_bias() (in module nitime.utils) rescale_arr() (in module nitime.utils)

reset() (nitime.descriptors.ResetMixin method) ResetMixin (class in nitime.descriptors) rgb_to_dict() (in module nitime.viz)

S

SeedCoherenceAnalyzer (class in nitime.analysis) set_input() (nitime.analysis.BaseAnalyzer method) shape (nitime.timeseries.TimeSeries attribute) signal_noise() (in module nitime.analysis) slice_during() (nitime.timeseries.TimeArray method) (nitime.timeseries.UniformTime method) SNRAnalyzer (class in nitime.analysis) SparseCoherenceAnalyzer (class in nitime.analysis) spectra() (nitime.analysis.MTCoherenceAnalyzer static method) SpectralAnalyzer (class in nitime.analysis) spectrum() (nitime.analysis.CoherenceAnalyzer static method) (nitime.analysis.SparseCoherenceAnalyzer static method)

spectrum_fourier() (nitime.analysis.SpectralAnalyzer static method) spectrum_multi_taper() (nitime.analysis.SpectralAnalyzer static method) square_window_spectrum() (in module nitime.utils) start (nitime.timeseries.Epochs attribute) stop (nitime.timeseries.Epochs attribute) str_tspec() (in module nitime.timeseries) str_valid_tspecs() (in module nitime.timeseries) structured_rand_arr() (in module nitime.utils) subcolormap() (in module nitime.viz) symm_rand_arr() (in module nitime.utils)

T

tapers() (nitime.analysis.MTCoherenceAnalyzer static method) target_cache() (nitime.analysis.SeedCoherenceAnalyzer static method) test() (in module nitime.testlib) threshold_arr() (in module nitime.utils) thresholded_arr() (in module nitime.utils) time() (nitime.timeseries.TimeSeries static method) time_series_from_file() (in module nitime.fmri.io) TimeArray (class in nitime.timeseries) TimeInterface (class in nitime.timeseries)

TimeSeries (class in nitime.timeseries) TimeSeriesBase (class in nitime.timeseries) TimeSeriesInterface (class in nitime.timeseries) to_period() (nitime.timeseries.Frequency method) tril_indices() (in module nitime.utils) tril_indices_from() (in module nitime.utils) triu_indices() (in module nitime.utils) triu_indices_from() (in module nitime.utils)

U

UniformTime (class in nitime.timeseries)

unwrap_phases() (in module nitime.utils)

W

weights() (nitime.analysis.MTCoherenceAnalyzer static method) wfmorlet_fft() (in module nitime.algorithms) winspect() (in module nitime.viz)

wlogmorlet() (in module nitime.algorithms) wlogmorlet_fft() (in module nitime.algorithms) wmorlet() (in module nitime.algorithms)

X

xcorr() (nitime.analysis.CorrelationAnalyzer static method) xcorr_eta() (nitime.analysis.EventRelatedAnalyzer static method)

xcorr_norm() (nitime.analysis.CorrelationAnalyzer static method)

Y

yule_AR_est() (in module nitime.algorithms)

Z

z_score() (nitime.analysis.NormalizationAnalyzer static method) zero_pad() (in module nitime.utils)

zscore() (in module nitime.utils)