Package: biosig-tools Source: biosig4c++ Version: 0.96.3+svn2677-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 48 Depends: neurodebian-popularity-contest, libbiosig0, libc6 (>= 2.4), libcholmod1.7.1 (>= 1:3.4.0), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.1.4) Homepage: http://biosig.sf.net/ Priority: extra Section: science Filename: pool/main/b/biosig4c++/biosig-tools_0.96.3+svn2677-1~nd11.04+1_amd64.deb Size: 13820 SHA256: 0ff2c17b42a59193774b5a476563ba374fdc2a8ed50d95414e2bf0fa91b6fe72 SHA1: f3a7dc754a6923831a971bc8808171c6f40b736a MD5sum: 7be85a6a2c3b4133c5ea28792023987b Description: format conversion tools for biomedical data formats Based on BioSig library, this package provides command line tools, such as . - save2gdf: converter between different file formats, including but not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF, BDF, CWFB. save2gdf can be also used to upload or retrieve data from a bscs server. Package: caret Version: 5.6.4~dfsg.1-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 18852 Depends: neurodebian-popularity-contest, libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libgomp1 (>= 4.2.1), libminc2-1, libqt4-network (>= 4:4.5.3), libqt4-opengl (>= 4:4.5.3), libqt4-xml (>= 4:4.5.3), libqtcore4 (>= 4:4.7.0~beta1), libqtgui4 (>= 4:4.5.3), libqwt5-qt4, libstdc++6 (>= 4.5), libvtk5.4, zlib1g (>= 1:1.2.3.3.dfsg) Recommends: qt-assistant-compat Suggests: caret-data (>= 5.6.2~dfsg.1~) Homepage: http://brainvis.wustl.edu/wiki/index.php/Caret:About Priority: optional Section: science Filename: pool/main/c/caret/caret_5.6.4~dfsg.1-1~nd11.04+1_amd64.deb Size: 7431450 SHA256: f112da9fe9e64b7737f5f72d79501afeb9e3e2377e91511a49bbeb07abd7388e SHA1: d876a9279265cccae950f5fb131f8f83972d673e MD5sum: ad15e79a85d3d6f24086b5ea920e65be Description: Computerized Anatomical Reconstruction and Editing Toolkit This software allows for creating, viewing and manipulating surface reconstructions of the cerebral and cerebellar cortex, viewing volumes and for displaying experimental data on the surfaces and volumes. While Caret is primarily a GUI application with 'caret_command' there is also a versatile command line tool, that allows access to a substantial proportion of Caret's functionality. . Caret can download and use stereotaxic atlases (human, monkey, mouse and rat) from an open online database. . Some functionality of Caret is only available when additional data files, provided by the caret-data package, are available. This includes: . - Map volumes to surface via PALS atlas - Multi-resolution morphing - Projection of foci via PALS atlas - Surface-based registration - Surface flattening . Currently the caret-data package is only available from the NeuroDebian repository. Please see http://neuro.debian.net for more imformation. Package: connectomeviewer Version: 2.0.0-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1884 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-cfflib (>= 2.0.5), python-networkx (>= 1.4), python-nibabel, python-numpy (>= 1.3.0), python-scipy, python-chaco, mayavi2, ipython Recommends: python-nipype, python-dipy, python-matplotlib, python-qscintilla2 Suggests: nipy-suite Homepage: http://www.connectomeviewer.org Priority: extra Section: python Filename: pool/main/c/connectomeviewer/connectomeviewer_2.0.0-1~nd11.04+1_all.deb Size: 1354976 SHA256: 6bf1ba4771e3120929c8f6a2283d07400ebf050ffc763407a99bfed5c535854c SHA1: d1b18a49d580160e87d0929f5146697aedd6a6aa MD5sum: 21910506bcbee95f3964e5ec8c959808 Description: Interactive Analysis and Visualization for MR Connectomics The Connectome Viewer is a extensible, scriptable, pythonic research environment for visualization and (network) analysis in neuroimaging and connectomics. . Employing the Connectome File Format, diverse data types such as networks, surfaces, volumes, tracks and metadata are handled and integrated. The Connectome Viewer is part of the MR Connectome Toolkit. Package: debruijn Version: 1.5-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 88 Depends: neurodebian-popularity-contest, libc6 (>= 2.4), libfftw3-3, libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0) Homepage: http://www.cfn.upenn.edu/aguirre/wiki/public:de_bruijn_software Priority: extra Section: science Filename: pool/main/d/debruijn/debruijn_1.5-1~nd11.04+1_amd64.deb Size: 39246 SHA256: ddb4ec25aae0d941f0eb73466e5014e561f7abaea2c88794b08497622c6d5d2a SHA1: 1c2e8a1aebb663dec4a6c12f0c334590d6e15e94 MD5sum: f3a472d394231dd2f239d48ef3deb2d4 Description: De Bruijn cycle generator Stimulus counter-balance is important for many experimental designs. This command-line software creates De Bruijn cycles, which are pseudo-random sequences with arbitrary levels of counterbalance. "Path-guided" de Bruijn cycles may also be created. These sequences encode a hypothesized neural modulation at specified temporal frequencies, and have enhanced detection power for BOLD fMRI experiments. Package: dmtcp Version: 1.2.1-2~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 3732 Depends: neurodebian-popularity-contest, libc6 (>= 2.7), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.5) Homepage: http://dmtcp.sourceforge.net Priority: optional Section: utils Filename: pool/main/d/dmtcp/dmtcp_1.2.1-2~nd11.04+1_amd64.deb Size: 1602634 SHA256: a9572d575559b140ac0cb09c1128b90ef56587e937a74ca65a3193814f25925a SHA1: fc87e0a64ec857849ab26dd6ffe064d6b5e6d8b3 MD5sum: fe668a827eb62926f615900f81f91acf Description: Checkpoint/Restart functionality for Linux processes DMTCP (Distributed MultiThreaded Checkpointing) is a tool to transparently checkpointing the state of an arbitrary group of programs including multi-threaded and distributed computations. It operates directly on the user binary executable, with no Linux kernel modules or other kernel mods. . Among the applications supported by DMTCP are OpenMPI, MATLAB, Python, Perl, and many programming languages and shell scripting languages. DMTCP also supports GNU screen sessions, including vim/cscope and emacs. With the use of TightVNC, it can also checkpoint and restart X-Windows applications, as long as they do not use extensions (e.g.: no OpenGL, no video). . This package contains DMTCP binaries. Package: dmtcp-dbg Source: dmtcp Version: 1.2.1-2~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 33040 Depends: neurodebian-popularity-contest, dmtcp Homepage: http://dmtcp.sourceforge.net Priority: extra Section: debug Filename: pool/main/d/dmtcp/dmtcp-dbg_1.2.1-2~nd11.04+1_amd64.deb Size: 8198672 SHA256: 9237cdc9f78d9318943f5e9173153c08f6897b8378836e3f5f5f268e7789796c SHA1: 90a903afa0235d8d1ce462afae219564bcbf2925 MD5sum: 8c8d57673afc6cb1c16ce67a24e62677 Description: Debug package for dmtcp DMTCP (Distributed MultiThreaded Checkpointing) is a tool to transparently checkpointing the state of an arbitrary group of programs including multi-threaded and distributed computations. It operates directly on the user binary executable, with no Linux kernel modules or other kernel mods. . Among the applications supported by DMTCP are OpenMPI, MATLAB, Python, Perl, and many programming languages and shell scripting languages. DMTCP also supports GNU screen sessions, including vim/cscope and emacs. With the use of TightVNC, it can also checkpoint and restart X-Windows applications, as long as they do not use extensions (e.g.: no OpenGL, no video). . This package contains debugging symbols for DMTCP. Package: freenect Source: libfreenect Version: 1:0.0.1+20101211+2-2~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 12 Depends: neurodebian-popularity-contest, libfreenect-demos, libfreenect-dev, libfreenect0.0 Homepage: http://openkinect.org/ Priority: extra Section: libs Filename: pool/main/libf/libfreenect/freenect_0.0.1+20101211+2-2~nd11.04+1_amd64.deb Size: 2536 SHA256: ef8428bce20be7a11bdad1860407c6f0a0ec32d38c2653444aaa01996f5d4d1b SHA1: 588837f36bff3e83c8f3dabb58a10c51933d9c84 MD5sum: 6042927b6887c231c3b6f8ee61512c9d Description: library for accessing Kinect USB camera -- meta package libfreenect is the core library for accessing the Microsoft Kinect USB camera. . This is the meta package to install all components of the project. Package: gdf-tools Source: libgdf Version: 0.1.1-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 124 Depends: neurodebian-popularity-contest, libboost-filesystem1.42.0 (>= 1.42.0-1), libboost-program-options1.42.0 (>= 1.42.0-1), libboost-system1.42.0 (>= 1.42.0-1), libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgdf0, libstdc++6 (>= 4.4.0) Homepage: http://sourceforge.net/projects/libgdf Priority: extra Section: utils Filename: pool/main/libg/libgdf/gdf-tools_0.1.1-1~nd11.04+1_amd64.deb Size: 41594 SHA256: 867e6deb6e588548668115d6e3be811e52526968f16f03808e91323b0b94782c SHA1: 98737092d002998651d4600e8e64cf20ac06c3f3 MD5sum: 134f9656178d832de7bf27289fd0e74d Description: IO library for the GDF -- helper tools GDF (General Dataformat for Biosignals) is intended to provide a generic storage for biosignals, such as EEG, ECG, MEG etc. . This package provides the tool shipped with the library (gdf_merger). Package: itksnap Version: 2.2.0-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 8656 Depends: neurodebian-popularity-contest, libc6 (>= 2.4), libfltk1.1 (>= 1.1.8~rc1), libgcc1 (>= 1:4.1.1), libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libinsighttoolkit3.18, libmysqlclient16 (>= 5.1.21-1), libstdc++6 (>= 4.5), libvtk5.4 Homepage: http://www.itksnap.org Priority: extra Section: science Filename: pool/main/i/itksnap/itksnap_2.2.0-1~nd11.04+1_amd64.deb Size: 3702022 SHA256: 83e35e240a98bf11e9101da23583f64914f377e9a8d90759c2fbaefe0a5e895e SHA1: 4eb46d9711aff7249a1221b43951b5047b954f50 MD5sum: 2a927c1c7af47cd7f13bbd74e8cf8b0c Description: semi-automatic segmentation of structures in 3D images SNAP provides semi-automatic segmentation of structures in medical images (e.g. magnetic resonance images of the brain) using active contour methods, as well as manual delineation and image navigation. Noteworthy features are: . * Linked cursor for seamless 3D navigation * Manual segmentation in three orthogonal planes at once * Support for many different 3D image formats, including NIfTI * Support for concurrent, linked viewing and segmentation of multiple images * Limited support for color images (e.g., diffusion tensor maps) * 3D cut-plane tool for fast post-processing of segmentation results Package: klustakwik Version: 2.0.1-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 80 Depends: neurodebian-popularity-contest, libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.1.1) Homepage: http://sourceforge.net/projects/klustakwik/ Priority: extra Section: science Filename: pool/main/k/klustakwik/klustakwik_2.0.1-1~nd11.04+1_amd64.deb Size: 22946 SHA256: 7b1c678e143a7244aedff53ca5064d8b6113ad4bd6c2c71232272474c96204c7 SHA1: b20487c1e162725ee846d1d9ebf2ebb2e8727e06 MD5sum: 83b91d26ee9a956103127078090401a0 Description: automatic sorting of the samples (spikes) into clusters KlustaKwik is a program for automatic clustering of continuous data into a mixture of Gaussians. The program was originally developed for sorting of neuronal action potentials, but can be applied to any sort of data. Package: libbiosig-dev Source: biosig4c++ Version: 0.96.3+svn2677-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 1604 Depends: neurodebian-popularity-contest, libbiosig0 (= 0.96.3+svn2677-1~nd11.04+1) Homepage: http://biosig.sf.net/ Priority: extra Section: libdevel Filename: pool/main/b/biosig4c++/libbiosig-dev_0.96.3+svn2677-1~nd11.04+1_amd64.deb Size: 391474 SHA256: 3f19f1e667cec394dd7fe337e2d6de002cfad2f53f03590331e4622db053efe7 SHA1: 55b75908cb9c9c1b34209e0ae1b736b6c0a8428f MD5sum: 632f8674cd89d2738dd9e3307230b40f Description: I/O library for biomedical data - development files BioSig is a library for accessing files in several biomedical data formats (including EDF, BDF, GDF, BrainVision, BCI2000, CFWB, HL7aECG, SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI, EEG1100, FAMOS, SigmaPLpro, TMS32). The complete list of supported file formats is available at http://pub.ist.ac.at/~schloegl/biosig/TESTED . . This package provides header files and static library. Package: libbiosig0 Source: biosig4c++ Version: 0.96.3+svn2677-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 880 Depends: neurodebian-popularity-contest, libc6 (>= 2.7), libcholmod1.7.1 (>= 1:3.4.0), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.2.1), zlib1g (>= 1:1.1.4) Homepage: http://biosig.sf.net/ Priority: extra Section: libs Filename: pool/main/b/biosig4c++/libbiosig0_0.96.3+svn2677-1~nd11.04+1_amd64.deb Size: 309408 SHA256: 7ebbf2a0fea0cd938702538d19d65f8c84abdf9a6cdfc89c6e66b8fdb6967118 SHA1: 1d9c94a1e5d42de635a12d80a0775e5a5e858a2d MD5sum: 3fde135092a7e5fa19b057df7dee58a2 Description: I/O library for biomedical data - dynamic library BioSig is a library for accessing files in several biomedical data formats (including EDF, BDF, GDF, BrainVision, BCI2000, CFWB, HL7aECG, SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI, EEG1100, FAMOS, SigmaPLpro, TMS32). The complete list of supported file formats is available at http://pub.ist.ac.at/~schloegl/biosig/TESTED . . This package provides dynamic library. Package: libbiosig0-dbg Source: biosig4c++ Version: 0.96.3+svn2677-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 240 Depends: neurodebian-popularity-contest, libbiosig0 (= 0.96.3+svn2677-1~nd11.04+1) Homepage: http://biosig.sf.net/ Priority: extra Section: debug Filename: pool/main/b/biosig4c++/libbiosig0-dbg_0.96.3+svn2677-1~nd11.04+1_amd64.deb Size: 69618 SHA256: e538ba7febcb07a03d109549682295e03eeb6e634bbfc4899e53ccfc61d01b87 SHA1: 98d10c152bebd870d24d8bad25ad79373e7b6a96 MD5sum: 3240d0746ac767de4642587801edebc3 Description: I/O library for biomedical data - debug symbols BioSig is a library for accessing files in several biomedical data formats (including EDF, BDF, GDF, BrainVision, BCI2000, CFWB, HL7aECG, SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI, EEG1100, FAMOS, SigmaPLpro, TMS32). The complete list of supported file formats is available at http://pub.ist.ac.at/~schloegl/biosig/TESTED . . This package provides debug symbols. Package: libdmtcpaware-dev Source: dmtcp Version: 1.2.1-2~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 36 Depends: neurodebian-popularity-contest, libdmtcpaware1 (= 1.2.1-2~nd11.04+1) Homepage: http://dmtcp.sourceforge.net Priority: optional Section: libdevel Filename: pool/main/d/dmtcp/libdmtcpaware-dev_1.2.1-2~nd11.04+1_amd64.deb Size: 6570 SHA256: 38c5e9bdc382cb2952092ef5dfc310d0497b1cdb2009611f8ad7e9a32a404d0f SHA1: 284289b65c96663f42b2f303c0dd0e376ecea448 MD5sum: d0a4c9fe644afbb31ce9a8ce2602e871 Description: DMTCP programming interface -- developer package DMTCP (Distributed MultiThreaded Checkpointing) is a tool to transparently checkpointing the state of an arbitrary group of programs including multi-threaded and distributed computations. It operates directly on the user binary executable, with no Linux kernel modules or other kernel mods. . Among the applications supported by DMTCP are OpenMPI, MATLAB, Python, Perl, and many programming languages and shell scripting languages. DMTCP also supports GNU screen sessions, including vim/cscope and emacs. With the use of TightVNC, it can also checkpoint and restart X-Windows applications, as long as they do not use extensions (e.g.: no OpenGL, no video). . This package provides libraries for developing applications that need to interact with dmtcp. Package: libdmtcpaware1 Source: dmtcp Version: 1.2.1-2~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 48 Depends: neurodebian-popularity-contest, dmtcp, libc6 (>= 2.2.5) Homepage: http://dmtcp.sourceforge.net Priority: optional Section: libs Filename: pool/main/d/dmtcp/libdmtcpaware1_1.2.1-2~nd11.04+1_amd64.deb Size: 6370 SHA256: 02187560538c74f0dfcfe4d404494eb9a6e2f8a0f8f5526fd7add68119b897a5 SHA1: 5471876be9fbc1a8c0043a51576166393f156fac MD5sum: 56971b7fe7dbabd3cbc0fb8f0403f02e Description: DMTCP programming interface DMTCP (Distributed MultiThreaded Checkpointing) is a tool to transparently checkpointing the state of an arbitrary group of programs including multi-threaded and distributed computations. It operates directly on the user binary executable, with no Linux kernel modules or other kernel mods. . Among the applications supported by DMTCP are OpenMPI, MATLAB, Python, Perl, and many programming languages and shell scripting languages. DMTCP also supports GNU screen sessions, including vim/cscope and emacs. With the use of TightVNC, it can also checkpoint and restart X-Windows applications, as long as they do not use extensions (e.g.: no OpenGL, no video). . This package provides a programming interface to allow checkpointed applications to interact with dmtcp. Package: libeigen3-dev Source: eigen3 Version: 3.0.1-1.1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 3412 Depends: neurodebian-popularity-contest Suggests: libeigen3-doc Homepage: http://eigen.tuxfamily.org Priority: extra Section: libdevel Filename: pool/main/e/eigen3/libeigen3-dev_3.0.1-1.1~nd11.04+1_amd64.deb Size: 509838 SHA256: 7166106a7a86868990bd5c4c30d4553bcc610bce4ee6be57c4ad03b097dfe267 SHA1: b40911ac04f2764ac6df6519e9a23da1c5263113 MD5sum: 16f2824a3ec5616b7b1e5e5f8a5227f2 Description: lightweight C++ template library for linear algebra Eigen 3 is a lightweight C++ template library for vector and matrix math, a.k.a. linear algebra. . Unlike most other linear algebra libraries, Eigen 3 focuses on the simple mathematical needs of applications: games and other OpenGL apps, spreadsheets and other office apps, etc. Eigen 3 is dedicated to providing optimal speed with GCC. A lot of improvements since 2-nd version of Eigen. Package: libeigen3-doc Source: eigen3 Version: 3.0.1-1.1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 10268 Depends: neurodebian-popularity-contest, ttf-freefont, libjs-jquery Suggests: libeigen3-dev Homepage: http://eigen.tuxfamily.org Priority: extra Section: doc Filename: pool/main/e/eigen3/libeigen3-doc_3.0.1-1.1~nd11.04+1_all.deb Size: 2313118 SHA256: 65749da7a405cc76f859f243a134f73ea38dc26f9b389138c22f9c241ac0cda6 SHA1: 3aa2cc66e967ab82e54d3fe148e1c72ec3cf2908 MD5sum: b77c8cacfc03c883ce2cdcf8ebd2ff09 Description: eigen3 API docmentation Eigen 3 is a lightweight C++ template library for vector and matrix math, a.k.a. linear algebra. . This package provides the complete eigen3 API documentation in HTML format. Package: libfreenect-demos Source: libfreenect Version: 1:0.0.1+20101211+2-2~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 92 Depends: neurodebian-popularity-contest, freeglut3, libc6 (>= 2.3.4), libfreenect0.0, libgcc1 (>= 1:4.1.1), libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libice6 (>= 1:1.0.0), libsm6, libstdc++6 (>= 4.4.0), libusb-1.0-0 (>= 2:1.0.8), libx11-6, libxext6, libxi6, libxmu6, libglut3 Homepage: http://openkinect.org/ Priority: extra Section: libdevel Filename: pool/main/libf/libfreenect/libfreenect-demos_0.0.1+20101211+2-2~nd11.04+1_amd64.deb Size: 25082 SHA256: 3d601d33e7a6bbbf9a7b6e98550d40be2616e59a9b86e19d33422307ffc62f6f SHA1: ebb1ba4176a2f82c0d4741b4aaf40f3e7cdd22f1 MD5sum: 2286fbea705056c879930a6fa0efda5b Description: library for accessing Kinect USB camera -- demonstrations libfreenect is the core library for accessing the Microsoft Kinect USB camera. . This package includes some example programs for kinect. All programs start with a freenec- prefix. Package: libfreenect-dev Source: libfreenect Version: 1:0.0.1+20101211+2-2~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 80 Depends: neurodebian-popularity-contest, libusb-1.0-0-dev, libfreenect0.0 (= 1:0.0.1+20101211+2-2~nd11.04+1) Homepage: http://openkinect.org/ Priority: extra Section: libdevel Filename: pool/main/libf/libfreenect/libfreenect-dev_0.0.1+20101211+2-2~nd11.04+1_amd64.deb Size: 18586 SHA256: 7741676f69ea9ddd8144d68ca73cc611d2da1d0c3a3c063c2be21383956362a6 SHA1: 7a1247d4714c7255b6686c917f6d59e8c8d76d27 MD5sum: 05eebf6793cc2d72230bbba4718c9fe7 Description: library for accessing Kinect USB camera -- development files libfreenect is the core library for accessing the Microsoft Kinect USB camera. . This is the development package containing the libraries and header for software development with libfreenect. Package: libfreenect0.0 Source: libfreenect Version: 1:0.0.1+20101211+2-2~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 96 Depends: neurodebian-popularity-contest, libc6 (>= 2.7), libusb-1.0-0 (>= 2:1.0.8), udev Conflicts: libfreenect Homepage: http://openkinect.org/ Priority: extra Section: libs Filename: pool/main/libf/libfreenect/libfreenect0.0_0.0.1+20101211+2-2~nd11.04+1_amd64.deb Size: 27904 SHA256: 4842a210efb66c7ec414a67dc17d22b3054ae8c28af4059f56e939005cd8b724 SHA1: 938196a891a80e95bdfa84784c4cecfdd15bc66a MD5sum: 22b9aa708ca2362a5fab4d86c05f5ed5 Description: library for accessing Kinect USB camera libfreenect is the core library for accessing the Microsoft Kinect USB camera. Currently, the library supports access to: - RGB and Depth Images - Motors - Accelerometer - LED Package: libgdf-dev Source: libgdf Version: 0.1.1-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 140 Depends: neurodebian-popularity-contest, libgdf0 (= 0.1.1-1~nd11.04+1) Homepage: http://sourceforge.net/projects/libgdf Priority: extra Section: libdevel Filename: pool/main/libg/libgdf/libgdf-dev_0.1.1-1~nd11.04+1_amd64.deb Size: 18538 SHA256: c23e932e513adeac57badc00d8a1313467c4d9396b948655bd673e38d9aa4a0e SHA1: 41252235face22f096eb5d94a9fd3835b53cbc62 MD5sum: 73a53868b3cb67298dc105d41832bfaa Description: IO library for the GDF -- development library GDF (General Dataformat for Biosignals) is intended to provide a generic storage for biosignals, such as EEG, ECG, MEG etc. . This package provides the header files and static library. Package: libgdf0 Source: libgdf Version: 0.1.1-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 328 Depends: neurodebian-popularity-contest, libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.5) Homepage: http://sourceforge.net/projects/libgdf Priority: extra Section: libs Filename: pool/main/libg/libgdf/libgdf0_0.1.1-1~nd11.04+1_amd64.deb Size: 103624 SHA256: b28cdc12327f9f5a04fef6ba973cbd4e1eac44d89ff34f62b724b538a4332738 SHA1: 3c806d811ef44dcb071d445a699b20d8a3afbb27 MD5sum: 75dcc4b4afbc3d4c56e5d93d5c8155df Description: IO library for the GDF (general dataformat for biosignals) GDF (General Dataformat for Biosignals) is intended to provide a generic storage for biosignals, such as EEG, ECG, MEG etc. . This package contains the shared library. Package: libgdf0-dbg Source: libgdf Version: 0.1.1-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 5428 Depends: neurodebian-popularity-contest, libgdf0 (= 0.1.1-1~nd11.04+1) Homepage: http://sourceforge.net/projects/libgdf Priority: extra Section: debug Filename: pool/main/libg/libgdf/libgdf0-dbg_0.1.1-1~nd11.04+1_amd64.deb Size: 1380036 SHA256: 54c41ae587b88ed81ed90f1d327b8605727cf262eed5bcaa48f20b27dc68f07b SHA1: a6dbdab5963b4236b4e65cb64745120d078cdcd0 MD5sum: 98161f98b7c726c5df76e37c1fa74521 Description: IO library for the GDF -- debug symbols GDF (General Dataformat for Biosignals) is intended to provide a generic storage for biosignals, such as EEG, ECG, MEG etc. . This package provides debug symbols. Package: matlab-support-dev Source: matlab-support Version: 0.0.14~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 16 Depends: neurodebian-popularity-contest Conflicts: matlab-dev (<= 0.0.14~) Replaces: matlab-dev (<= 0.0.14~) Priority: optional Section: devel Filename: pool/main/m/matlab-support/matlab-support-dev_0.0.14~nd11.04+1_all.deb Size: 5526 SHA256: 0a5ec0e12050643a178bcc67f1600ab95f9152334d8be9d108f1595dec9c6ea6 SHA1: 0783bda9456ea8e9d39e8a9a7e7ff01739325767 MD5sum: f8a2f0790b01d312f21be0c60cb75c54 Description: helpers for packages building Matlab toolboxes Analogous to Octave a Makefile snippet is provided that configures the locations for architecture independent M-files, binary MEX-extensions, and there corresponding sources. This package can be used as a build-dependency by other packages shipping Matlab toolboxes. Package: mrtrix Version: 0.2.9-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 7276 Depends: neurodebian-popularity-contest, libatk1.0-0 (>= 1.12.4), libatkmm-1.6-1 (>= 2.22.1), libc6 (>= 2.4), libcairo2 (>= 1.2.4), libcairomm-1.0-1 (>= 1.6.4), libfontconfig1 (>= 2.8.0), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), libgdk-pixbuf2.0-0 (>= 2.22.0), libgl1-mesa-glx | libgl1, libglib2.0-0 (>= 2.12.0), libglibmm-2.4-1c2a (>= 2.28.0), libglu1-mesa | libglu1, libgsl0ldbl (>= 1.9), libgtk2.0-0 (>= 2.8.0), libgtkglext1, libgtkmm-2.4-1c2a (>= 1:2.24.0), libice6 (>= 1:1.0.0), libpango1.0-0 (>= 1.14.0), libpangomm-1.4-1 (>= 2.27.1), libsigc++-2.0-0c2a (>= 2.0.2), libsm6, libstdc++6 (>= 4.5), libx11-6, libxmu6, libxt6 Suggests: mrtrix-doc Homepage: http://www.brain.org.au/software/mrtrix Priority: extra Section: science Filename: pool/main/m/mrtrix/mrtrix_0.2.9-1~nd11.04+1_amd64.deb Size: 2274206 SHA256: 2c00b7c6bfb4e7b9aa6a6124889b5d8920ec488e0773ba5a875a98cf47e1f0d5 SHA1: d1a025d951a3e19a093cc17243031c5f038ba774 MD5sum: b6bf23d5c0a9744e70ef4962f68e4d08 Description: diffusion-weighted MRI white matter tractography Set of tools to perform diffusion-weighted MRI white matter tractography of the brain in the presence of crossing fibres, using Constrained Spherical Deconvolution, and a probabilisitic streamlines algorithm. Magnetic resonance images in DICOM, ANALYZE, or uncompressed NIfTI format are supported. Package: mrtrix-doc Source: mrtrix Version: 0.2.9-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3304 Depends: neurodebian-popularity-contest Homepage: http://www.brain.org.au/software/mrtrix Priority: extra Section: doc Filename: pool/main/m/mrtrix/mrtrix-doc_0.2.9-1~nd11.04+1_all.deb Size: 2939868 SHA256: c372ef0d9b75a343192754d1e0a18055619b8961121b1745292516b9fba8db4b SHA1: 8a16ccc8e4835905d508be2c6d749598764d22b7 MD5sum: 633683d632e7d2a92debea37015f9ec5 Description: documentation for mrtrix Set of tools to perform diffusion-weighted MRI white matter tractography of the brain in the presence of crossing fibres, using Constrained Spherical Deconvolution, and a probabilisitic streamlines algorithm. Magnetic resonance images in DICOM, ANALYZE, or uncompressed NIfTI format are supported. . This package provides the documentation in HTML format. Package: neurodebian-desktop Source: neurodebian Version: 0.25~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 268 Depends: ssh-askpass-gnome | ssh-askpass, desktop-base, gnome-icon-theme, neurodebian-popularity-contest Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-desktop_0.25~nd11.04+1_all.deb Size: 113490 SHA256: 609f84f5dc2a84de0076f450ec2c6bda54fcf218806d1fdd004c3050d2336015 SHA1: 50dc0a47979ba27e7f7fb9f0c3b949db644ebc0d MD5sum: bfdbd6af4eb8ce27748b1ee0f433a36c Description: neuroscience research environment This package contains NeuroDebian artwork (icons, background image) and a NeuroDebian menu featuring most popular neuroscience tools automatically installed upon initial invocation. Package: neurodebian-dev Source: neurodebian Version: 0.25~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4408 Depends: devscripts, cowbuilder, python, neurodebian-keyring Recommends: virtualbox-ose, virtualbox-ose-fuse, zerofree, moreutils Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-dev_0.25~nd11.04+1_all.deb Size: 3845794 SHA256: b583641c2059cc1389dc2362f68708cfabf5983bd6dbce00b1a0eb89495585b5 SHA1: aae1004c90da8edcbc5fe44ca3f4bd712abf5948 MD5sum: d4a447fbe20620f4e2ce34410345f41d Description: NeuroDebian development tools neuro.debian.net sphinx website sources and development tools used by NeuroDebian to provide backports for a range of Debian/Ubuntu releases. Package: neurodebian-guest-additions Source: neurodebian Version: 0.25~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 148 Pre-Depends: virtualbox-ose-guest-utils, virtualbox-ose-guest-x11, virtualbox-ose-guest-dkms Depends: sudo, neurodebian-desktop, gdm, update-manager-gnome, update-notifier Recommends: chromium-browser Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-guest-additions_0.25~nd11.04+1_all.deb Size: 12814 SHA256: 024a912ba0aca83868b78876e24b127402518011a055a9959db5e6beef6670d3 SHA1: 01a21fbd086d8e8bc7b5791c47cc2f9437d08fed MD5sum: 649a3940d7fa97c7e26ec5380ceb3da7 Description: NeuroDebian guest additions (DO NOT INSTALL OUTSIDE VIRTUALBOX) This package configures a Debian installation as a guest operating system in a VirtualBox-based virtual machine for NeuroDebian. . DO NOT install this package unless you know what you are doing! For example, installation of this package relaxes several security mechanisms. Package: neurodebian-keyring Source: neurodebian Version: 0.25~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 20 Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-keyring_0.25~nd11.04+1_all.deb Size: 5866 SHA256: 0ddb751895ba9cdf611ca39fc1d78af9b6f423e38e7e0a082da2d69ec8f26008 SHA1: a698da617644d3097b690f1f550fc0cfe82a7d39 MD5sum: dddda8b231155a3aa2e9d2e784d840eb Description: GnuPG archive keys of the NeuroDebian archive The NeuroDebian project digitally signs its Release files. This package contains the archive keys used for that. Package: neurodebian-popularity-contest Source: neurodebian Version: 0.25~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 16 Depends: popularity-contest Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-popularity-contest_0.25~nd11.04+1_all.deb Size: 5020 SHA256: e3283c840c520b6c11c41519f2bba0bf1e062bf2c9417c2c1efef9a102432356 SHA1: f1357adf59c11ea3181842b7cb1064d5d68e5379 MD5sum: 803d47fb1de800be22a9efa634b6b92a Description: Helper for NeuroDebian popularity contest submissions This package is a complement to the generic popularity-contest package to enable anonymous submission of usage statistics to NeuroDebian in addition to the popcon submissions to the underlying distribution (e.g. Debian or Ubuntu) popcon server. . Your participation in popcon is important for following reasons: - Popular packages receive more attention from developers, bugs are fixed faster and updates are provided quicker. - Assure that we do not drop support for a previous release of Debian or Ubuntu while are active users. - User statistics could be used by upstream research software developers to acquire funding for continued development. . It has an effect only if you have decided to participate in the Popularity Contest of your distribution, i.e. Debian or Ubuntu. You can always enable or disable your participation in popcon by running 'dpkg-reconfigure popularity-contest' as root. Package: nipy-suite Version: 0.1.0-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 36 Depends: python-nibabel (>= 1.0.0), python-nipy (>= 0.1.2+20110114), python-dipy (>= 0.5.0), python-nipype (>= 0.3.3), python-nitime (>= 0.2) Suggests: python-mvpa, psychopy Homepage: http://www.nipy.org Priority: extra Section: python Filename: pool/main/n/nipy-suite/nipy-suite_0.1.0-2_all.deb Size: 3898 SHA256: 882c8580ebd2d458a92f8d851d1ec9291fecf05f6ed98a8b754eb831c95368c8 SHA1: 6501d1d201160520f5aad29d0f9007c17b7d9778 MD5sum: eb090e568264d2f439892bcb98485b8c Description: Neuroimaging in Python NiPy is a comprehensive suite of Python modules to perform analysis of Neuroimaging data in Python. nipy-suite is a metapackage depending on the projects developed under NiPy project umbrella, such as - nibabel: bindings to various neuroimaging data formats - nipy: analysis of structural and functional neuroimaging data - nitime: timeseries analysis - dipy: analysis of MR diffusion imaging data - nipype: pipelines and worfklows Package: nipy-suite-doc Source: nipy-suite Version: 0.1.0-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 32 Depends: python-nibabel-doc (>= 1.0.0), python-nipy-doc (>= 0.1.2+20110114), python-dipy-doc (>= 0.5.0), python-nipype-doc (>= 0.3.3), python-nitime-doc (>= 0.2) Suggests: python-mvpa-doc Homepage: http://www.nipy.org Priority: extra Section: doc Filename: pool/main/n/nipy-suite/nipy-suite-doc_0.1.0-2_all.deb Size: 2250 SHA256: 54985bd9d6eaa352608b357f2deeb066bd2ac12d3c2e463082f5d9178701bbad SHA1: 5d2f5e94ff6b7ff737fe966f4a2e5ff67df93cca MD5sum: 37d2f8b6b6d203edf208afb0cdb56fa3 Description: Neuroimaging in Python -- documentation NiPy is a comprehensive suite of Python modules to perform analysis of Neuroimaging data in Python. . nipy-suite-doc is a metapackage depending on the documentation packages for NiPy projects. Package: octave-biosig Source: biosig4c++ Version: 0.96.3+svn2677-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 56 Depends: neurodebian-popularity-contest, libbiosig0, libblas3gf | libblas.so.3gf | libatlas3gf-base, libc6 (>= 2.4), libcholmod1.7.1 (>= 1:3.4.0), libfftw3-3, libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), libhdf5-serial-1.8.4 | libhdf5-1.8.4, liblapack3gf | liblapack.so.3gf | libatlas3gf-base, libncurses5 (>= 5.5-5~), libreadline6 (>= 6.0), libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.1.4) Homepage: http://biosig.sf.net/ Priority: extra Section: science Filename: pool/main/b/biosig4c++/octave-biosig_0.96.3+svn2677-1~nd11.04+1_amd64.deb Size: 17918 SHA256: 34ef3971d43361b3f8b2ffb863a216537243b1cd13cec4fb3dfebf4686c32c5f SHA1: 5d4c8b2b221f1859dbb156519ba396cfbc2a2470 MD5sum: c954df00099a1c7371b77d6b2a3b8b93 Description: Octave bindings for BioSig library This package provides Octave bindings for BioSig library. Primary goal -- I/O interface to variety of biomedical file formats, including but not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF. Package: octave-gdf Source: libgdf Version: 0.1.1-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 288 Depends: neurodebian-popularity-contest, octave3.2 (>= 3.2.4), libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgdf0, libstdc++6 (>= 4.4.0) Homepage: http://sourceforge.net/projects/libgdf Priority: extra Section: science Filename: pool/main/libg/libgdf/octave-gdf_0.1.1-1~nd11.04+1_amd64.deb Size: 116976 SHA256: 6da7a993a5f9de01ac477ae81d0cba1addaa365a562cc164b88d326eba933a1c SHA1: 3185a8012ce6c636521ed918662a3f53af963878 MD5sum: 0f45a86114fded6f2840b941f5439919 Description: IO library for the GDF -- Octave interface GDF (General Dataformat for Biosignals) is intended to provide a generic storage for biosignals, such as EEG, ECG, MEG etc. . This package provides Octave bindings for libgdf. Package: opensesame Version: 0.24-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 5540 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-qt4, python-pygame (>= 1.8.1~), python-numpy (>= 1.3.0~), python-tk Recommends: python-serial (>= 2.3~), psychopy (>= 1.64.0), python-pyaudio (>= 0.2.4), python-imaging (>= 1.1.7), python-opengl (>= 3.0.1) Homepage: http://www.cogsci.nl/software/opensesame Priority: extra Section: science Filename: pool/main/o/opensesame/opensesame_0.24-1~nd11.04+1_all.deb Size: 3577522 SHA256: 4efbae53de6c75593c483707eab5e7afe91c398b4979a29b8244d152c8a66898 SHA1: faa71eba75dcd110c8cb9960de947c7550238cad MD5sum: 0e2eea06d428a012eb8e39623d290f18 Description: graphical experiment builder for the social sciences This graphical environment provides an easy to use, point-and-click interface for creating psychological experiments. In addition to a powerful sketchpad for creating visual stimuli, OpenSesame features a sampler and synthesizer for sound playback. For more complex tasks, OpenSesame supports Python scripting using the built-in editor with syntax highlighting. Python-Version: 2.6, 2.7 Package: psychopy Version: 1.65.02.dfsg-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4840 Depends: neurodebian-popularity-contest, python (>= 2.4), python-support (>= 0.90.0), python-pyglet | python-pygame, python-opengl, python-numpy, python-matplotlib, python-lxml, python-configobj Recommends: python-wxgtk2.8, python-pyglet, python-pygame, python-openpyxl, python-imaging, python-serial, python-scipy, libavbin0, ipython Suggests: python-iolabs, python-pyxid Homepage: http://www.psychopy.org Priority: optional Section: science Filename: pool/main/p/psychopy/psychopy_1.65.02.dfsg-1~nd11.04+1_all.deb Size: 2620766 SHA256: e209a34c33fe7b32e367fc80155d568d7f4dd629af3011a4ab248873d0d698cc SHA1: 0c66c41065800a31c82bd4f431ec495aa5d69bb4 MD5sum: c39333691e7ee5b78ea075744a187455 Description: environment for creating psychology stimuli in Python PsychoPy provides an environment for creating psychology stimuli using Python scripting language. It combines the graphical strengths of OpenGL with easy Python syntax to give psychophysics a free and simple stimulus presentation and control package. . The goal is to provide, for the busy scientist, tools to control timing and windowing and a simple set of pre-packaged stimuli and methods. PsychoPy features . - IDE GUI for coding in a powerful scripting language (Python) - Builder GUI for rapid development of stimulation sequences - Use of hardware-accelerated graphics (OpenGL) - Integration with Spectrascan PR650 for easy monitor calibration - Simple routines for staircase and constant stimuli experimental methods as well as curve-fitting and bootstrapping - Simple (or complex) GUIs via wxPython - Easy interfaces to joysticks, mice, sound cards etc. via PyGame - Video playback (MPG, DivX, AVI, QuickTime, etc.) as stimuli Python-Version: 2.6, 2.7 Package: python-biosig Source: biosig4c++ Version: 0.96.3+svn2677-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 224 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.7), python-support (>= 0.90.0), libbiosig0, libc6 (>= 2.4), libcholmod1.7.1 (>= 1:3.4.0), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.1.4) Homepage: http://biosig.sf.net/ Priority: extra Section: python Filename: pool/main/b/biosig4c++/python-biosig_0.96.3+svn2677-1~nd11.04+1_amd64.deb Size: 52818 SHA256: 32491caa8ddf652124b486d9403758b8e7f50e5c7533d5ceeb36a5c973d7f64c SHA1: a747a4e4a493cdc9939171ccd023eecb227077da MD5sum: 814be39bc6ba592d07481e3c98ab00f0 Description: Python bindings for BioSig library This package provides Python bindings for BioSig library. Primary goal -- I/O interface to variety of biomedical file formats, including but not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF. Package: python-brian Source: brian Version: 1.3.0-2~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1692 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-brian-lib (>= 1.3.0-2~nd11.04+1), python-matplotlib (>= 0.90.1), python-numpy (>= 1.3.0), python-scipy (>= 0.7.0) Recommends: python-sympy Suggests: python-brian-doc, python-nose, python-cherrypy Homepage: http://www.briansimulator.org/ Priority: extra Section: python Filename: pool/main/b/brian/python-brian_1.3.0-2~nd11.04+1_all.deb Size: 314082 SHA256: 2d9f572c910a8070e76d96f916b1858e7a3cfcb3d7750b8a21e75054dae76297 SHA1: fba506e6b9b94367e05eb793dbbce2c4f05d4f78 MD5sum: 916374ef38059036d8a2576acb1b07d3 Description: simulator for spiking neural networks Brian is a clock-driven simulator for spiking neural networks. It is designed with an emphasis on flexibility and extensibility, for rapid development and refinement of neural models. Neuron models are specified by sets of user-specified differential equations, threshold conditions and reset conditions (given as strings). The focus is primarily on networks of single compartment neuron models (e.g. leaky integrate-and-fire or Hodgkin-Huxley type neurons). Features include: - a system for specifying quantities with physical dimensions - exact numerical integration for linear differential equations - Euler, Runge-Kutta and exponential Euler integration for nonlinear differential equations - synaptic connections with delays - short-term and long-term plasticity (spike-timing dependent plasticity) - a library of standard model components, including integrate-and-fire equations, synapses and ionic currents - a toolbox for automatically fitting spiking neuron models to electrophysiological recordings Package: python-brian-doc Source: brian Version: 1.3.0-2~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 5312 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-brian Homepage: http://www.briansimulator.org/ Priority: extra Section: doc Filename: pool/main/b/brian/python-brian-doc_1.3.0-2~nd11.04+1_all.deb Size: 1648998 SHA256: 0c3359089d96e80707830438cee12482972a6a61d9e5323ab90a915238058edf SHA1: 4ac1e6d3d78fd29c1f8527a665a5d46b3961c38b MD5sum: 1d481855def66843a0934bf99b4b9be6 Description: simulator for spiking neural networks - documentation Brian is a clock-driven simulator for spiking neural networks. . This package provides user's manual (in HTML format), examples and demos. Package: python-brian-lib Source: brian Version: 1.3.0-2~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 292 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-numpy (<< 1:1.6), python-numpy (>= 1:1.5.1), python-support (>= 0.90.0), libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0) Homepage: http://www.briansimulator.org/ Priority: extra Section: python Filename: pool/main/b/brian/python-brian-lib_1.3.0-2~nd11.04+1_amd64.deb Size: 105666 SHA256: d470b61aef5a3c7420bb456a7303ed374a7ef77a13afbba5d6787b4147516a43 SHA1: 28ad51104f7c324080d78017aab4a5d3a7ab440c MD5sum: 947bb40a899f8d3b2a03c50cffda8bd6 Description: simulator for spiking neural networks -- extensions Brian is a clock-driven simulator for spiking neural networks. . This package provides Python binary extensions. Package: python-cfflib Source: cfflib Version: 2.0.5-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 768 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-lxml, python-numpy, python-networkx (>= 1.4), python-nibabel (>= 1.1.0) Recommends: python-nose, python-sphinx, python-tables, python-h5py Provides: python2.6-cfflib, python2.7-cfflib Homepage: http://cmtk.org/cfflib Priority: extra Section: python Filename: pool/main/c/cfflib/python-cfflib_2.0.5-1~nd11.04+1_all.deb Size: 217710 SHA256: f43ce8ebf52ffc74d10c86f356c53d6bdbf60d8ac8afdc330c789831b212b8d2 SHA1: c8b78aac188af4bb0a489bd6af44e00aad07af59 MD5sum: 6c16047dfeecab6c850d99dd75191b8b Description: Multi-modal connectome and metadata management and integration The Connectome File Format Library (cfflib) is a Python module for multi-modal neuroimaging connectome data and metadata management and integration. . It enables single subject and multi-subject data integration for a variety of modalities, such as networks, surfaces, volumes, fiber tracks, timeseries, scripts, arbitrary data objects such as homogeneous arrays or CSV/JSON files. It relies on existing Python modules and the standard library for basic data I/O, and adds a layer of metadata annotation as tags or with structured properties to individual data objects. Package: python-dipy Source: dipy Version: 0.5.0-2~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2068 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0), python-numpy, python-scipy, python-dipy-lib (>= 0.5.0-2~nd11.04+1) Recommends: python-matplotlib, python-vtk, python-nose, python-nibabel, python-tables Suggests: ipython Provides: python2.6-dipy, python2.7-dipy Homepage: http://nipy.org/dipy Priority: extra Section: python Filename: pool/main/d/dipy/python-dipy_0.5.0-2~nd11.04+1_all.deb Size: 1456854 SHA256: 52e7de9385053ebfd35fe6b01dd956c987e3498826420cd954ed71023b608158 SHA1: 3bc033430a4df3eae4f9a5a987aa58d17c274990 MD5sum: 0b908d7d0a09480199c69244e0a564b0 Description: toolbox for analysis of MR diffusion imaging data Dipy is a toolbox for the analysis of diffusion magnetic resonance imaging data. It features: - Reconstruction algorithms, e.g. GQI, DTI - Tractography generation algorithms, e.g. EuDX - Intelligent downsampling of tracks - Ultra fast tractography clustering - Resampling datasets with anisotropic voxels to isotropic - Visualizing multiple brains simultaneously - Finding track correspondence between different brains - Warping tractographies into another space, e.g. MNI space - Reading many different file formats, e.g. Trackvis or NIfTI - Dealing with huge tractographies without memory restrictions - Playing with datasets interactively without storing Python-Version: 2.6, 2.7 Package: python-dipy-doc Source: dipy Version: 0.5.0-2~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3212 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-dipy Homepage: http://nipy.org/dipy Priority: extra Section: doc Filename: pool/main/d/dipy/python-dipy-doc_0.5.0-2~nd11.04+1_all.deb Size: 1942128 SHA256: fe7e7da4a00561a8dea8d7e9dacde560b1e3465e9f74603b1cce5b4c99185e1c SHA1: def40767671dbb176b0d8241f592cca3e7654577 MD5sum: 9d3354418c37070a3452509b6469f72d Description: toolbox for analysis of MR diffusion imaging data -- documentation Dipy is a toolbox for the analysis of diffusion magnetic resonance imaging data. . This package provides the documentation in HTML format. Package: python-dipy-lib Source: dipy Version: 0.5.0-2~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 1080 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0), libc6 (>= 2.4) Provides: python2.6-dipy-lib, python2.7-dipy-lib Homepage: http://nipy.org/dipy Priority: extra Section: python Filename: pool/main/d/dipy/python-dipy-lib_0.5.0-2~nd11.04+1_amd64.deb Size: 416520 SHA256: 7f307b8dc334edde446facabdc48968e837ac7512a667b91ab39d905f188073f SHA1: c780cfa33b1176f5fc57c8240877834db44cdbcd MD5sum: 6acd5148ae518cd0322ab547a4ce4bd0 Description: toolbox for analysis of MR diffusion imaging data -- extensions Dipy is a toolbox for the analysis of diffusion magnetic resonance imaging data. . This package provides architecture-dependent builds of the extensions. Python-Version: 2.6, 2.7 Package: python-freenect Source: libfreenect Version: 1:0.0.1+20101211+2-2~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 128 Depends: neurodebian-popularity-contest, libc6 (>= 2.4), libfreenect0.0, libusb-1.0-0 (>= 2:1.0.8) Suggests: python-numpy, python-matplotlib, python-opencv Homepage: http://openkinect.org/ Priority: extra Section: python Filename: pool/main/libf/libfreenect/python-freenect_0.0.1+20101211+2-2~nd11.04+1_amd64.deb Size: 33236 SHA256: 33fe05de82fc63d2b93244f574d0c142c31dd9c4223ee4a441fe1f4634748b2a SHA1: e1649047394fc850ceabf28fd2c6c85fe45de5d6 MD5sum: 5dce76c8621282462ed2c987235ba7d0 Description: library for accessing Kinect USB camera -- Python bindings libfreenect is the core library for accessing the Microsoft Kinect USB camera. . This package provides freenect extension to use libfreenect functionality from Python and includes some demo scripts. Package: python-joblib Source: joblib Version: 0.5.1-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 232 Depends: neurodebian-popularity-contest, python, python-support (>= 0.90.0) Recommends: python-numpy, python-nose, python-simplejson Homepage: http://packages.python.org/joblib/ Priority: optional Section: python Filename: pool/main/j/joblib/python-joblib_0.5.1-1~nd11.04+1_all.deb Size: 44188 SHA256: 31f84c7be667044d3a46c72f13042efcd75fedaea4652fa07da268c1abd806e1 SHA1: 0ee0100b6ba7355c21b4043e2182047eda7a69cf MD5sum: 668c3aa1b87b0fd0f257dbd5f3a74bbb Description: tools to provide lightweight pipelining in Python Joblib is a set of tools to provide lightweight pipelining in Python. In particular, joblib offers: - transparent disk-caching of the output values and lazy re-evaluation (memoize pattern) - easy simple parallel computing - logging and tracing of the execution . Joblib is optimized to be fast and robust in particular on large, long-running functions and has specific optimizations for numpy arrays. Package: python-mpi4py Source: mpi4py Version: 1.2.2-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 2208 Depends: neurodebian-popularity-contest, libc6 (>= 2.4), libopenmpi1.3, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0) Recommends: openmpi-bin Suggests: python-numpy Homepage: http://code.google.com/p/mpi4py/ Priority: extra Section: python Filename: pool/main/m/mpi4py/python-mpi4py_1.2.2-1~nd11.04+1_amd64.deb Size: 738576 SHA256: 238c0e96a33cc14efb60e61d65a397717fb20982c583ee8d3faff5ea9248f11b SHA1: 6a06b014b097a1a91519cb6fc90f03ca89458dab MD5sum: 1465fd2442b9866dc4898e74e4061eb4 Description: bindings of the Message Passing Interface (MPI) standard MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. . mpi4py is constructed on top of the MPI-1/MPI-2 specification and provides an object oriented interface which closely follows MPI-2 C++ bindings. It supports point-to-point (sends, receives) and collective (broadcasts, scatters, gathers) communications of any picklable Python object as well as optimized communications of Python object exposing the single-segment buffer interface (NumPy arrays, builtin bytes/string/array objects). Package: python-mpi4py-dbg Source: mpi4py Version: 1.2.2-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 5768 Depends: neurodebian-popularity-contest, python-mpi4py (= 1.2.2-1~nd11.04+1) Homepage: http://code.google.com/p/mpi4py/ Priority: extra Section: debug Filename: pool/main/m/mpi4py/python-mpi4py-dbg_1.2.2-1~nd11.04+1_amd64.deb Size: 1410212 SHA256: 6f0f6e2ae58e2b02f8974cc87da0ec2747ffffecd3f99b81415a7191c0111f30 SHA1: 029f08f65d7b7479bb6dae2e013df0878954814d MD5sum: 0422f8afe0410f280a74172e2b04f785 Description: bindings of the MPI standard -- debug symbols MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. . mpi4py is constructed on top of the MPI-1/MPI-2 specification and provides an object oriented interface which closely follows MPI-2 C++ bindings. It supports point-to-point (sends, receives) and collective (broadcasts, scatters, gathers) communications of any picklable Python object as well as optimized communications of Python object exposing the single-segment buffer interface (NumPy arrays, builtin bytes/string/array objects). . This package provides debug symbols. Package: python-mpi4py-doc Source: mpi4py Version: 1.2.2-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 268 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-mpi4py Homepage: http://code.google.com/p/mpi4py/ Priority: extra Section: doc Filename: pool/main/m/mpi4py/python-mpi4py-doc_1.2.2-1~nd11.04+1_all.deb Size: 54626 SHA256: 3af585c5346cf72f64c7e3e655ba755e619a214fc943a806bd22c0f710154b50 SHA1: c671da5c6347ab81372616ead5b27b78eba29fd9 MD5sum: f041744082cb75b57427cb5b3d5e7a2e Description: bindings of the MPI standard -- documentation MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. . mpi4py is constructed on top of the MPI-1/MPI-2 specification and provides an object oriented interface which closely follows MPI-2 C++ bindings. It supports point-to-point (sends, receives) and collective (broadcasts, scatters, gathers) communications of any picklable Python object as well as optimized communications of Python object exposing the single-segment buffer interface (NumPy arrays, builtin bytes/string/array objects). . This package provides HTML rendering of the user's manual. Package: python-mvpa-snapshot Source: pymvpa-snapshot Version: 0.6.0~rc4-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4596 Depends: neurodebian-popularity-contest, python (>= 2.4), python-support (>= 0.90.0), python-numpy, python-mvpa-snapshot-lib (>= 0.6.0~rc4-1~nd11.04+1) Recommends: python-nibabel, python-psyco, python-mdp, python-scipy, shogun-python-modular, python-pywt, python-matplotlib, python-reportlab, python-h5py Suggests: fslview, fsl, python-nose, python-lxml, python-openopt, python-rpy2, python-mvpa-doc, python-scikits-learn Conflicts: python-mvpa Provides: python2.6-mvpa-snapshot, python2.7-mvpa-snapshot Homepage: http://www.pymvpa.org Priority: optional Section: python Filename: pool/main/p/pymvpa-snapshot/python-mvpa-snapshot_0.6.0~rc4-1~nd11.04+1_all.deb Size: 2314444 SHA256: 4088e986b047486230d993c17a2ddbf9b1e6dba2e7be7950e08d1ecd18ec8e6b SHA1: b7b54cf030f31d0a55537017bc73224f1f4ad672 MD5sum: 57faf9c7100871e174add5cbb5787786 Description: multivariate pattern analysis with Python PyMVPA eases pattern classification analyses of large datasets, with an accent on neuroimaging. It provides high-level abstraction of typical processing steps (e.g. data preparation, classification, feature selection, generalization testing), a number of implementations of some popular algorithms (e.g. kNN, Ridge Regressions, Sparse Multinomial Logistic Regression), and bindings to external machine learning libraries (libsvm, shogun). . While it is not limited to neuroimaging data (e.g. fMRI, or EEG) it is eminently suited for such datasets. . This is a package of a development snapshot. The latest released version is provided by the python-mvpa package. Python-Version: 2.6, 2.7 Package: python-mvpa-snapshot-lib Source: pymvpa-snapshot Version: 0.6.0~rc4-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 224 Depends: neurodebian-popularity-contest, libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.1.1), libsvm2, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0), python-numpy Conflicts: python-mvpa-lib Provides: python2.6-mvpa-snapshot-lib, python2.7-mvpa-snapshot-lib Homepage: http://www.pymvpa.org Priority: optional Section: python Filename: pool/main/p/pymvpa-snapshot/python-mvpa-snapshot-lib_0.6.0~rc4-1~nd11.04+1_amd64.deb Size: 72096 SHA256: ed864f1ed0a958a3f3bc3da1ed503d9c3296573aa2a28aeb8a9e8edae7eb4941 SHA1: 4e9e419880a5716ebad1ea758467807dad5bb89a MD5sum: 5a123ae8458e1e6ab0d93f478129b819 Description: low-level implementations and bindings for PyMVPA This is an add-on package for the PyMVPA framework. It provides a low-level implementation of an SMLR classifier and custom Python bindings for the LIBSVM library. . This is a package of a development snapshot. The latest released version is provided by the python-mvpa-lib package. Python-Version: 2.6, 2.7 Package: python-networkx Version: 1.4-2~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2672 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0) Recommends: python-numpy, python-scipy, python-pygraphviz | python-pydot, python-pkg-resources, python-matplotlib, python-yaml Homepage: http://networkx.lanl.gov/ Priority: optional Section: python Filename: pool/main/p/python-networkx/python-networkx_1.4-2~nd11.04+1_all.deb Size: 647290 SHA256: 46af0162d46d69b38d76984d10577b337ec8cbeb61b064ebca55500dd92ffd1c SHA1: eb58edd4c3c571c35d6a796e0d6c547be617d113 MD5sum: 721176531d2dc53a9eeb81d80861ffcc Description: tool to create, manipulate and study complex networks NetworkX is a Python-based package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks. . The structure of a graph or network is encoded in the edges (connections, links, ties, arcs, bonds) between nodes (vertices, sites, actors). If unqualified, by graph it's meant a simple undirected graph, i.e. no self-loops and no multiple edges are allowed. By a network it's usually meant a graph with weights (fields, properties) on nodes and/or edges. . The potential audience for NetworkX includes: mathematicians, physicists, biologists, computer scientists, social scientists. Package: python-networkx-doc Source: python-networkx Version: 1.4-2~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 15812 Depends: neurodebian-popularity-contest Homepage: http://networkx.lanl.gov/ Priority: optional Section: doc Filename: pool/main/p/python-networkx/python-networkx-doc_1.4-2~nd11.04+1_all.deb Size: 6229030 SHA256: 3f9a60dbe16c43365090f53f01ecabb8de486a1c785e8d57e547e606111a4636 SHA1: 5f4e62733f3342daf0a873ea56dac67bbdd5b121 MD5sum: d721409534a58309f5f63c1bedeb1371 Description: tool to create, manipulate and study complex networks - documentation NetworkX is a Python-based package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks. . The structure of a graph or network is encoded in the edges (connections, links, ties, arcs, bonds) between nodes (vertices, sites, actors). If unqualified, by graph it's meant a simple undirected graph, i.e. no self-loops and no multiple edges are allowed. By a network it's usually meant a graph with weights (fields, properties) on nodes and/or edges. . The potential audience for NetworkX includes: mathematicians, physicists, biologists, computer scientists, social scientists. . This package contains documentation for NetworkX. Package: python-nibabel Source: nibabel Version: 1.1.0-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3608 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0), python-numpy, python-scipy Recommends: python-dicom Suggests: python-nibabel-doc Provides: python2.6-nibabel, python2.7-nibabel Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: python Filename: pool/main/n/nibabel/python-nibabel_1.1.0-1~nd11.04+1_all.deb Size: 1665814 SHA256: 634a9433263713d05172cc51911e48e6618840b4d39d1825e12330b4c93fab33 SHA1: 613177876f214ce3472783355072cca467927204 MD5sum: fc7082234d76848b6d934ea3a61b32d2 Description: Python bindings to various neuroimaging data formats NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. . This package also provides a commandline tool for conversion of PAR/REC to NIfTI images. Python-Version: 2.6, 2.7 Package: python-nibabel-doc Source: nibabel Version: 1.1.0-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2736 Depends: neurodebian-popularity-contest, libjs-jquery Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: doc Filename: pool/main/n/nibabel/python-nibabel-doc_1.1.0-1~nd11.04+1_all.deb Size: 404626 SHA256: 6312bef49e81bfa61b3e87a7e31f54c26039f705216667f2b4e506fabbe755f6 SHA1: ef837b8232c7835b69c1ae7401dbb13b9abab005 MD5sum: 40f31d2eaaeb0440bceb41627a05f96d Description: documentation for NiBabel NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. . This package provides the documentation in HTML format. Package: python-nipy Source: nipy Version: 0.1.2+201100720-2~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3408 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-numpy (<< 1:1.6), python-numpy (>= 1:1.5.1), python-support (>= 0.90.0), python-scipy, python-nibabel, python-nipy-lib (>= 0.1.2+201100720-2~nd11.04+1) Recommends: python-matplotlib, mayavi2 Suggests: python-mvpa Provides: python2.6-nipy, python2.7-nipy Homepage: http://neuroimaging.scipy.org Priority: extra Section: python Filename: pool/main/n/nipy/python-nipy_0.1.2+201100720-2~nd11.04+1_all.deb Size: 703194 SHA256: 1f6743ba8ee6cbc5796dda944b97b99e30c3833c054d127f2af1e86dd338d67f SHA1: ebd851060a280679f0c8aadd515d0c68143f2e17 MD5sum: d6613e9f73313ce73a8c5b89c08331f7 Description: Analysis of structural and functional neuroimaging data NiPy is a Python-based framework for the analysis of structural and functional neuroimaging data. It currently has a full system for general linear modeling of functional magnetic resonance imaging (fMRI). Python-Version: 2.6, 2.7 Package: python-nipy-doc Source: nipy Version: 0.1.2+201100720-2~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 9416 Depends: neurodebian-popularity-contest, libjs-jquery Recommends: python-nipy Homepage: http://neuroimaging.scipy.org Priority: extra Section: doc Filename: pool/main/n/nipy/python-nipy-doc_0.1.2+201100720-2~nd11.04+1_all.deb Size: 2511622 SHA256: 633acae8abe5d86d4bb69b80b57e93d1ae6254ed02b19fcef6ec306336ccd437 SHA1: 909d95f8c731a4d2f2a3cf594482a9f5146007eb MD5sum: 9000cda1e8256b8155700f92fb8f7f5f Description: documentation and examples for NiPy This package contains NiPy documentation in various formats (HTML, TXT) including * User manual * Developer guidelines * API documentation Package: python-nipy-lib Source: nipy Version: 0.1.2+201100720-2~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 2664 Depends: neurodebian-popularity-contest, libblas3gf | libblas.so.3gf | libatlas3gf-base, libc6 (>= 2.4), liblapack3gf | liblapack.so.3gf | libatlas3gf-base, python (<< 2.8), python (>= 2.6), python-numpy (<< 1:1.6), python-numpy (>= 1:1.5.1), python-support (>= 0.90.0) Provides: python2.6-nipy-lib, python2.7-nipy-lib Homepage: http://neuroimaging.scipy.org Priority: extra Section: python Filename: pool/main/n/nipy/python-nipy-lib_0.1.2+201100720-2~nd11.04+1_amd64.deb Size: 1045860 SHA256: 61180b06008190d15e0f1c3a25ae60da4a7d2c72a7d2d8016d39b9cfbc701f82 SHA1: f03fc41f23a1a8b775c90b6f88f0f6908ffbea02 MD5sum: 693abb8b3de591eb075fc4e83615b7b5 Description: Analysis of structural and functional neuroimaging data NiPy is a Python-based framework for the analysis of structural and functional neuroimaging data. It currently has a full system for general linear modeling of functional magnetic resonance imaging (fMRI). . This package provides architecture-dependent builds of the libraries. Python-Version: 2.6, 2.7 Package: python-nipy-lib-dbg Source: nipy Version: 0.1.2+201100720-2~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 2920 Depends: neurodebian-popularity-contest, libblas3gf | libblas.so.3gf | libatlas3gf-base, libc6 (>= 2.4), liblapack3gf | liblapack.so.3gf | libatlas3gf-base, python (<< 2.8), python (>= 2.6), python-numpy (<< 1:1.6), python-numpy (>= 1:1.5.1), python-support (>= 0.90.0), python-nipy-lib (= 0.1.2+201100720-2~nd11.04+1) Provides: python2.6-nipy-lib-dbg, python2.7-nipy-lib-dbg Homepage: http://neuroimaging.scipy.org Priority: extra Section: debug Filename: pool/main/n/nipy/python-nipy-lib-dbg_0.1.2+201100720-2~nd11.04+1_amd64.deb Size: 1186984 SHA256: 81f621cf1f0d7d1965ddb6a9b2306e16fbdabcd8435c71a55d5506c2b6e553a7 SHA1: ba2131d0887ade76a6f9cefdf397953dae27228c MD5sum: 2b4063bb989a5a7c9399f490429c2ff3 Description: Analysis of structural and functional neuroimaging data NiPy is a Python-based framework for the analysis of structural and functional neuroimaging data. It currently has a full system for general linear modeling of functional magnetic resonance imaging (fMRI). . This package provides debugging symbols for architecture-dependent builds of the libraries. Python-Version: 2.6, 2.7 Package: python-nipype Source: nipype Version: 0.4.1-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2152 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-scipy, python-simplejson, python-traits (>= 4.0) | python-traits4, python-nibabel (>= 1.0.0~), python-networkx (>= 1.3), python-cfflib Recommends: ipython, python-nose, graphviz Suggests: fsl, afni, python-nipy, slicer, matlab-spm8, python-pyxnat Provides: python2.6-nipype, python2.7-nipype Homepage: http://nipy.sourceforge.net/nipype/ Priority: optional Section: python Filename: pool/main/n/nipype/python-nipype_0.4.1-1~nd11.04+1_all.deb Size: 384488 SHA256: 42b0a6034c2b2e191fcfa7c0ce1c1960980831ef6a920823ae8d3239490a9ade SHA1: ba28ac40a800982e9c5663cfbf44677e360c6c53 MD5sum: f64e38ccb8171f9597a715038152f8ac Description: Neuroimaging data analysis pipelines in Python Nipype interfaces Python to other neuroimaging packages and creates an API for specifying a full analysis pipeline in Python. Currently, it has interfaces for SPM, FSL, AFNI, Freesurfer, but could be extended for other packages (such as lipsia). Package: python-nipype-doc Source: nipype Version: 0.4.1-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4176 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-nipype Homepage: http://nipy.sourceforge.net/nipype/ Priority: optional Section: doc Filename: pool/main/n/nipype/python-nipype-doc_0.4.1-1~nd11.04+1_all.deb Size: 988092 SHA256: d8f1ab61f6f2e7034d269d9cc2ac34cf0fc65995aed39eb6b1f20865a26327d1 SHA1: 557658b2e1ed36faf7b6848b4cda6af67164ba8d MD5sum: 20e5d477857b94fcea6995d6e6149076 Description: Neuroimaging data analysis pipelines in Python -- documentation Nipype interfaces Python to other neuroimaging packages and creates an API for specifying a full analysis pipeline in Python. Currently, it has interfaces for SPM, FSL, AFNI, Freesurfer, but could be extended for other packages (such as lipsia). . This package contains Nipype examples and documentation in various formats. Package: python-nitime Source: nitime Version: 0.2.99-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2100 Depends: neurodebian-popularity-contest, python-numpy, python-scipy Recommends: python-matplotlib, python-nose, python-nibabel, python-networkx Homepage: http://nipy.org/nitime Priority: extra Section: python Filename: pool/main/n/nitime/python-nitime_0.2.99-1~nd11.04+1_all.deb Size: 1432878 SHA256: 4e902ff55d2e6285b0315995589ee4eed495773ee7816eaa2be4774e587fd492 SHA1: afe67f9fa8b27e1b1f41e660a3ebb0636884972e MD5sum: 6ded87a5a79088d93df495534633ca73 Description: timeseries analysis for neuroscience data (nitime) Nitime is a Python module for time-series analysis of data from neuroscience experiments. It contains a core of numerical algorithms for time-series analysis both in the time and spectral domains, a set of container objects to represent time-series, and auxiliary objects that expose a high level interface to the numerical machinery and make common analysis tasks easy to express with compact and semantically clear code. Package: python-nitime-doc Source: nitime Version: 0.2.99-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4592 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-nitime Homepage: http://nipy.org/nitime Priority: extra Section: doc Filename: pool/main/n/nitime/python-nitime-doc_0.2.99-1~nd11.04+1_all.deb Size: 3015308 SHA256: f22dbe25c0143df0ef4eb055f253f3d14f0bdb853cbb8578e8bfaf16925ffe6b SHA1: 9b0e86fbe8aa45b01fc284d8867f728caf4dd610 MD5sum: 4bc631ffaa5a908b78f8c3fd4c09b08b Description: timeseries analysis for neuroscience data (nitime) -- documentation Nitime is a Python module for time-series analysis of data from neuroscience experiments. . This package provides the documentation in HTML format. Package: python-openopt Source: openopt Version: 0.34+svn1146-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1448 Depends: neurodebian-popularity-contest, python (>= 2.5), python-support (>= 0.90.0), python-numpy Recommends: python-scipy, python-cvxopt, python-matplotlib Suggests: lp-solve Conflicts: python-scikits-openopt Replaces: python-scikits-openopt Provides: python2.6-openopt, python2.7-openopt Homepage: http://www.openopt.org Priority: extra Section: python Filename: pool/main/o/openopt/python-openopt_0.34+svn1146-1~nd11.04+1_all.deb Size: 206392 SHA256: 4b6de4dce6337dd70ee31852c15b59a235caef7f6cd7bc982802ed7e98316eb5 SHA1: d89601333d99555bade49637bdb136d286d6d23a MD5sum: 301c9393d777482326fd3e488f78b19c Description: Python module for numerical optimization Numerical optimization framework developed in Python which provides connections to lots of solvers with easy and unified OpenOpt syntax. Problems which can be tackled with OpenOpt * Linear Problem (LP) * Mixed-Integer Linear Problem (MILP) * Quadratic Problem (QP) * Non-Linear Problem (NLP) * Non-Smooth Problem (NSP) * Non-Linear Solve Problem (NLSP) * Least Squares Problem (LSP) * Linear Least Squares Problem (LLSP) * Mini-Max Problem (MMP) * Global Problem (GLP) . A variety of solvers is available (e.g. IPOPT, ALGENCAN). Python-Version: 2.6, 2.7 Package: python-openpyxl Source: openpyxl Version: 1.5.3+hg365-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 436 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0) Recommends: python-nose Homepage: http://bitbucket.org/ericgazoni/openpyxl/ Priority: optional Section: python Filename: pool/main/o/openpyxl/python-openpyxl_1.5.3+hg365-1~nd11.04+1_all.deb Size: 60182 SHA256: 2b2a244622f4baea55aee81d1670cefdd129bd54736c5f53785caea39fe1dcbf SHA1: 404e65664ee31bdcc977ece9663994507120559d MD5sum: 97299722ec2c2203e06db85e6b2ea109 Description: module to read/write OpenXML xlsx/xlsm files Openpyxl is a pure Python module to read/write Excel 2007 (OpenXML) xlsx/xlsm files. Package: python-pyxid Source: pyxid Version: 1.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 80 Depends: neurodebian-popularity-contest, python (>= 2.5), python-support (>= 0.90.0) Homepage: https://github.com/cedrus-opensource/pyxid Priority: optional Section: python Filename: pool/main/p/pyxid/python-pyxid_1.0-1~nd+1_all.deb Size: 11020 SHA256: 1031c0d69dd73cb38f3e0b826193211706a94bfd04da4287288418b257e54249 SHA1: 0f0d0524354e5d07eb89efcb11779d9acd9d57e2 MD5sum: 1f2a9bc07952b1f5c6b65fc5c092f75c Description: interface for Cedrus XID and StimTracker devices pyxid is a Python library for interfacing with Cedrus XID (eXperiment Interface Device) and StimTracker devices. XID devices are used in software such as SuperLab, Presentation, and ePrime for receiving input as part of stimulus/response testing experiments. . pyxid handles all of the low level device handling for XID devices in Python projects. Package: python-scikits-learn Source: scikit-learn Version: 0.8.1.dfsg-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1424 Depends: neurodebian-popularity-contest, python (>= 2.5), python-support (>= 0.90.0), python-numpy, python-scipy, python-scikits-learn-lib (>= 0.8.1.dfsg-1~nd11.04+1) Recommends: python-nose, python-psyco, python-matplotlib, python-joblib (>= 0.4.5) Suggests: python-dap, python-scikits-optimization, python-scikits-learn-doc Provides: python2.6-scikits-learn, python2.7-scikits-learn Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: python Filename: pool/main/s/scikit-learn/python-scikits-learn_0.8.1.dfsg-1~nd11.04+1_all.deb Size: 311460 SHA256: b3d73bee8420d7896888fed14c681c100e816232e17082dd69802973074d70f7 SHA1: c72f2a0490197405a6326d7589745b719b642afe MD5sum: 313c6ea368fc6c80103610b2e816896c Description: Python modules for machine learning and data mining scikit-learn is a collection of Python modules relevant to machine/statistical learning and data mining. Non-exhaustive list of included functionality: - Gaussian Mixture Models - Manifold learning - kNN - SVM (via LIBSVM) Python-Version: 2.6, 2.7 Package: python-scikits-learn-doc Source: scikit-learn Version: 0.8.1.dfsg-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 14604 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-scikits-learn Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: doc Filename: pool/main/s/scikit-learn/python-scikits-learn-doc_0.8.1.dfsg-1~nd11.04+1_all.deb Size: 9036084 SHA256: a1c13fad228674a644ddc6efec0a40293bf1e0b9d566d92c5a8ef0c8991dcdad SHA1: 91a5c10515892e10c2be79d3eaf1dfcbf8eb7a4d MD5sum: 6c06d3d0886a793db556ff704bcd1953 Description: documentation and examples for scikit-learn This package contains documentation and example scripts for python-scikits-learn. Package: python-scikits-learn-lib Source: scikit-learn Version: 0.8.1.dfsg-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 2720 Depends: neurodebian-popularity-contest, libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.2.1), python (<< 2.8), python (>= 2.6), python-numpy (<< 1:1.6), python-numpy (>= 1:1.5.1), python-support (>= 0.90.0) Provides: python2.6-scikits-learn-lib, python2.7-scikits-learn-lib Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: python Filename: pool/main/s/scikit-learn/python-scikits-learn-lib_0.8.1.dfsg-1~nd11.04+1_amd64.deb Size: 1030416 SHA256: da7d49304012f997abb279ba915b466d657106c050f94e191c50814b1d8ddd7d SHA1: 9718ba149a4b96239afaf6d238affd425b9ee9bb MD5sum: 29dd3842eb6c4d0cac72d95ce89593c2 Description: low-level implementations and bindings for scikits-learn This is an add-on package for python-scikits-learn. It provides low-level implementations and custom Python bindings for the LIBSVM library. Python-Version: 2.6, 2.7 Package: python-scikits.statsmodels Source: statsmodels Version: 0.3.0-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 13296 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0), python-numpy, python-scipy Recommends: python-matplotlib, python-nose, python-rpy Conflicts: python-scikits-statsmodels Replaces: python-scikits-statsmodels Provides: python2.6-scikits.statsmodels, python2.7-scikits.statsmodels Homepage: http://statsmodels.sourceforge.net/ Priority: extra Section: python Filename: pool/main/s/statsmodels/python-scikits.statsmodels_0.3.0-1~nd11.04+1_all.deb Size: 3100124 SHA256: 7ff7377939d960a7542b7a5e00e7b24945e26c7d1a1aeb97726d0de66da7a81c SHA1: c85db8ecbfce51f95df20f19dba27f6256ebc5b4 MD5sum: 53b634b8cd6589c241d4d89eb7cb9802 Description: classes and functions for the estimation of statistical models scikits.statsmodels is a pure Python package that provides classes and functions for the estimation of several categories of statistical models. These currently include linear regression models, OLS, GLS, WLS and GLS with AR(p) errors, generalized linear models for six distribution families and M-estimators for robust linear models. An extensive list of result statistics are available for each estimation problem. Python-Version: 2.6, 2.7 Package: python-scikits.statsmodels-doc Source: statsmodels Version: 0.3.0-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 18760 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-scikits.statsmodels Conflicts: python-scikits-statsmodels-doc Replaces: python-scikits-statsmodels-doc Homepage: http://statsmodels.sourceforge.net/ Priority: extra Section: doc Filename: pool/main/s/statsmodels/python-scikits.statsmodels-doc_0.3.0-1~nd11.04+1_all.deb Size: 1877800 SHA256: 5f450fc8037ea134ef9dcd12ad0d1cce493a9dcf7b1bdfe1adc7181fbe250236 SHA1: 327831dc0b960474c24f0931312d19ccc0386bde MD5sum: 50b899e8f55bbf3b71e30a34a273c9c7 Description: documentation and examples for python-scikits.statsmodels This package contains HTML documentation and example scripts for python-scikits.statsmodels. Package: python-sphinx Source: sphinx Version: 1.0.7-2~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4188 Depends: neurodebian-popularity-contest, python (>= 2.4), python-support (>= 0.90.0), python-docutils (>= 0.5), python-pygments (>= 0.8), python-jinja2 (>= 2.2), libjs-jquery Recommends: python (>= 2.6) | python-simplejson, python-imaging Suggests: jsmath Homepage: http://sphinx.pocoo.org/ Priority: optional Section: python Filename: pool/main/s/sphinx/python-sphinx_1.0.7-2~nd11.04+1_all.deb Size: 1260262 SHA256: a83da5c5e441ebd3cc4e0edfe0ebfe288603963b02fbcf9d391d5c3f8bc8a24c SHA1: 7c545c400b92ddfef48ad178b5d27b69debd8fd3 MD5sum: cabb0d6fe118ff07f7cd35ae3d00eb1d Description: tool for producing documentation for Python projects Sphinx is a tool for producing documentation for Python projects, using reStructuredText as markup language. . Sphinx features: * HTML, CHM, LaTeX output, * Cross-referencing source code, * Automatic indices, * Code highlighting, using Pygments, * Extensibility. Existing extensions: - automatic testing of code snippets, - including doctrings from Python modules. Package: python-traits4 Source: python-traits Version: 4.0.0-1~cbp1~nd11.04+1 Architecture: amd64 Bugs: mailto:bugs@neuro.debian.net Maintainer: NeuroDebian Team Installed-Size: 2256 Depends: neurodebian-popularity-contest, libc6 (>= 2.4), python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0) Suggests: python-traitsui Conflicts: python-traits (>= 4.0~) Homepage: http://pypi.python.org/pypi/traits Priority: optional Section: python Filename: pool/main/p/python-traits/python-traits4_4.0.0-1~cbp1~nd11.04+1_amd64.deb Size: 393982 SHA256: 57c2f40cbb982e96c90967925e1dd72c15464cca081b057f392f5097557a630f SHA1: 0a69bcc91d9878acf7c3952a45a5b5fb7352aae5 MD5sum: af60f0d7d26e8a0d138d5e27770f191a Description: Manifest typing and reactive programming for Python The traits package provides a metaclass with special attributes that are called traits. A trait is a type definition that can be used for normal Python object attributes, giving the attributes some additional characteristics: * Initialization: A trait attribute can have a default value * Validation: A trait attribute is manifestly typed. * Delegation: The value of a trait attribute can be contained in another object * Notification: Setting the value of a trait attribute can fired callbacks * Visualization: With the TraitsUI package, GUIs can be generated automatically from traited objects. Uploaders: Yaroslav Halchenko , Michael Hanke Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/python-traits4.git Vcs-Git: git://git.debian.org/git/pkg-exppsy/python-traits4.git Package: sigviewer Version: 0.5.1+svn556-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 992 Depends: neurodebian-popularity-contest, libbiosig0, libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libqt4-xml (>= 4:4.5.3), libqtcore4 (>= 4:4.7.0~beta1), libqtgui4 (>= 4:4.6.1), libstdc++6 (>= 4.5) Homepage: http://sigviewer.sourceforge.net Priority: extra Section: science Filename: pool/main/s/sigviewer/sigviewer_0.5.1+svn556-1~nd11.04+1_amd64.deb Size: 422992 SHA256: 504147e2c6535a690bc9325c990db0590f39098009da63d7065043e125810318 SHA1: 0f5e2da422edbbe0ad83186e77699eaa551355eb MD5sum: 064ff4751aa19d285d8e251e249cc3e1 Description: GUI viewer for biosignals such as EEG, EMG, and ECG SigViewer is a viewing and scoring software for biomedical signal data. It relies on biosig4c++ library which supports a number of data formats (including EDF, BDF, GDF, BrainVision, BCI2000, CFWB, HL7aECG, SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI, EEG1100, FAMOS, SigmaPLpro, TMS32). The complete list of supported file formats is available at http://pub.ist.ac.at/~schloegl/biosig/TESTED . . Besides displaying biosignals, SigViewer supports creating annotations to select artifacts or specific events. Package: spm8-common Source: spm8 Version: 8.4290~dfsg.1-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 22192 Depends: neurodebian-popularity-contest Recommends: spm8-data, spm8-doc Priority: extra Section: science Filename: pool/main/s/spm8/spm8-common_8.4290~dfsg.1-1~nd11.04+1_all.deb Size: 10547232 SHA256: 311aef085f7e4020abe98273e633d85d054b79eeec6b20638906c766424d10f1 SHA1: 94df1ab77472264814457881c5af62927f308821 MD5sum: 197fd2735629c7274ea3783181fc9bdc Description: analysis of brain imaging data sequences Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provides the platform-independent M-files. Package: spm8-data Source: spm8 Version: 8.4290~dfsg.1-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 73084 Depends: neurodebian-popularity-contest Priority: extra Section: science Filename: pool/main/s/spm8/spm8-data_8.4290~dfsg.1-1~nd11.04+1_all.deb Size: 52167568 SHA256: de99254176288f13c810031edd9076d7144137fcf2a47188bb847a35a7d70158 SHA1: 8e92a60804c5cc98514fae95e12f45c7dd6f688a MD5sum: 2b5e078263f961028a278528d21aa864 Description: data files for SPM8 Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provide the data files shipped with the SPM distribution, such as various stereotaxic brain space templates and EEG channel setups. Package: spm8-doc Source: spm8 Version: 8.4290~dfsg.1-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 9380 Depends: neurodebian-popularity-contest Priority: extra Section: doc Filename: pool/main/s/spm8/spm8-doc_8.4290~dfsg.1-1~nd11.04+1_all.deb Size: 8648816 SHA256: 1246975b745587320cfa229ea7b4475a5133e9ecbbb472d6fa6b08468d7e0554 SHA1: 7ed14c87012cef9a2d7371c45ee738e6590940b3 MD5sum: a6b73e1f5d718a59ef15d3604e3af435 Description: manual for SPM8 Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provides the SPM manual in PDF format. Package: svgtune Version: 0.1.0-2 Architecture: all Maintainer: Yaroslav Halchenko Installed-Size: 64 Depends: python, python-lxml Suggests: inkscape Homepage: http://github.com/yarikoptic/svgtune Priority: optional Section: graphics Filename: pool/main/s/svgtune/svgtune_0.1.0-2_all.deb Size: 6680 SHA256: 69b4df1e0b4c247673265c7f5bb2b2ffe2209d783617bf7f6eadce86633f80e1 SHA1: bec339e4453c35a05a616deef6769a6f2ad2d00d MD5sum: ef6797498477a73f930ad9bc0db3ba73 Description: tool to generate a set of .svg files out of a single .svg file svgtune is just a little helper to generate a set of .svg files out of a single .svg file, by tuning respective groups/layers visibility, transparency or anything else. . It might come very handy for generation of incremental figures to be embedded into the presentation in any format which inkscape could render using original .svg file (e.g. pdf, png).