Package: condor-doc Source: condor Version: 7.8.1~dfsg.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 6100 Depends: neurodebian-popularity-contest Homepage: http://research.cs.wisc.edu/condor Priority: extra Section: doc Filename: pool/main/c/condor/condor-doc_7.8.1~dfsg.1-1~nd+1_all.deb Size: 1332776 SHA256: 76cc1ec019982dd093fecf00aa0206fa9b9c17a6b40e6e547dd8a5ac272d23a7 SHA1: 78bcb3647dfcaacbafa28a2f27b30d95b9a108b1 MD5sum: 0a9fb0c69dfa011cbca94d6318714347 Description: distributed workload management system - documentation Like other full-featured batch systems, Condor provides a job queueing mechanism, scheduling policy, priority scheme, resource monitoring, and resource management. Users submit their serial or parallel jobs to Condor; Condor places them into a queue. It chooses when and where to run the jobs based upon a policy, carefully monitors their progress, and ultimately informs the user upon completion. . Unlike more traditional batch queueing systems, Condor can also effectively harness wasted CPU power from otherwise idle desktop workstations. Condor does not require a shared file system across machines - if no shared file system is available, Condor can transfer the job's data files on behalf of the user. . This package provides Condor's documentation in HTML and PDF format, as well as configuration and other examples. Package: connectomeviewer Version: 2.1.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1578 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0), python-cfflib (>= 2.0.5), python-networkx (>= 1.4), python-nibabel, python-numpy (>= 1.3.0), python-scipy, python-chaco, mayavi2 (>= 4.0.0), ipython Recommends: python-nipype, python-dipy, python-matplotlib, python-qscintilla2 Suggests: nipy-suite Homepage: http://www.connectomeviewer.org Priority: extra Section: python Filename: pool/main/c/connectomeviewer/connectomeviewer_2.1.0-1~nd+1_all.deb Size: 1356156 SHA256: 434aff9b028c4333df4aff71cc45e6b82a98574f6297ddab70d0ebc260ff5e6a SHA1: 5dc49f902c6d89fd0fea7758ce53c9462ec73db4 MD5sum: a9b946a201ad29742748d1c152b6fd57 Description: Interactive Analysis and Visualization for MR Connectomics The Connectome Viewer is a extensible, scriptable, pythonic research environment for visualization and (network) analysis in neuroimaging and connectomics. . Employing the Connectome File Format, diverse data types such as networks, surfaces, volumes, tracks and metadata are handled and integrated. The Connectome Viewer is part of the MR Connectome Toolkit. Package: debian-handbook Version: 6.0+20120509~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 23215 Depends: neurodebian-popularity-contest Homepage: http://debian-handbook.info Priority: optional Section: doc Filename: pool/main/d/debian-handbook/debian-handbook_6.0+20120509~nd+1_all.deb Size: 21998670 SHA256: b33f038d8363175473cc056a5f98fc7af52386a466b45d4b2e42d2f25233a3ed SHA1: 7a0b369b4548a3f4fb61aa1ef9efa2ddf2b319e2 MD5sum: 3e3d2cf990fcc5ed1ed6bdbfb5c1c3dd Description: reference book for Debian users and system administrators Accessible to all, the Debian Administrator's Handbook teaches the essentials to anyone who wants to become an effective and independent Debian GNU/Linux administrator. . It covers all the topics that a competent Linux administrator should master, from the installation and the update of the system, up to the creation of packages and the compilation of the kernel, but also monitoring, backup and migration, without forgetting advanced topics like SELinux setup to secure services, automated installations, or virtualization with Xen, KVM or LXC. . The Debian Administrator's Handbook has been written by two Debian developers — Raphaël Hertzog and Roland Mas. . This package contains the English book covering Debian 6.0 “Squeeze”. Package: fail2ban Version: 0.8.6-3~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 339 Depends: neurodebian-popularity-contest, python (>= 2.4), python-central (>= 0.6.11), lsb-base (>= 2.0-7) Recommends: iptables, whois, python-gamin Suggests: mailx Homepage: http://www.fail2ban.org Priority: optional Section: net Filename: pool/main/f/fail2ban/fail2ban_0.8.6-3~nd+1_all.deb Size: 103466 SHA256: 29d8077c99805470e6a7d0196cd44707905e159e564f70a5f83300364c85b4a0 SHA1: 9ae59643b846517bc94a88724a18c7f12b9ac5b6 MD5sum: 37b3ab7b9c3a6ffea223927df59411a8 Description: ban hosts that cause multiple authentication errors Fail2ban monitors log files (e.g. /var/log/auth.log, /var/log/apache/access.log) and temporarily or persistently bans failure-prone addresses by updating existing firewall rules. Fail2ban allows easy specification of different actions to be taken such as to ban an IP using iptables or hostsdeny rules, or simply to send a notification email. . By default, it comes with filter expressions for various services (sshd, apache, qmail, proftpd, sasl etc.) but configuration can be easily extended for monitoring any other text file. All filters and actions are given in the config files, thus fail2ban can be adopted to be used with a variety of files and firewalls. Python-Version: current, >= 2.4 Package: freeipmi Version: 1.1.5-3~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1 Depends: neurodebian-popularity-contest, freeipmi-common, freeipmi-tools, freeipmi-ipmidetect, freeipmi-bmc-watchdog Homepage: http://www.gnu.org/software/freeipmi/ Priority: extra Section: admin Filename: pool/main/f/freeipmi/freeipmi_1.1.5-3~nd+1_all.deb Size: 928 SHA256: 05f29073e2746666e0fbc4c111150ef67a4ea5a91974f3d43fb41e2bb16e60ff SHA1: 54dbd1897168ea82b4c803ac9cdf3185b1e1c24f MD5sum: 7a7f53cc7987a2216d7d16bf3b5f0ca9 Description: GNU implementation of the IPMI protocol FreeIPMI is a collection of Intelligent Platform Management IPMI system software. It provides in-band and out-of-band software and a development library conforming to the Intelligent Platform Management Interface (IPMI v1.5 and v2.0) standards. . This meta-package depends on all separate modules of freeipmi. Package: freeipmi-common Source: freeipmi Version: 1.1.5-3~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 380 Pre-Depends: dpkg (>= 1.15.7.2~) Depends: neurodebian-popularity-contest Suggests: freeipmi-tools Homepage: http://www.gnu.org/software/freeipmi/ Priority: extra Section: admin Filename: pool/main/f/freeipmi/freeipmi-common_1.1.5-3~nd+1_all.deb Size: 296942 SHA256: f1e328eeb5e8aa8cde083ce4c3b1e115f911921a7165f6719cc109685e5fa76f SHA1: 368c7818e51c28f1d98d426a4e687df0b70a0d32 MD5sum: 1b586f2ac96616824bb815a6b8addf7f Description: GNU implementation of the IPMI protocol - common files FreeIPMI is a collection of Intelligent Platform Management IPMI system software. It provides in-band and out-of-band software and a development library conforming to the Intelligent Platform Management Interface (IPMI v1.5 and v2.0) standards. . This package provides configuration used by the rest of FreeIPMI framework and generic documentation to orient the user. Package: guacamole Version: 0.6.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 302 Depends: neurodebian-popularity-contest, guacd (>= 0.6), guacd (<< 0.7) Recommends: libguac-client-vnc0 Suggests: tomcat6 | jetty Homepage: http://guacamole.sourceforge.net/ Priority: extra Section: net Filename: pool/main/g/guacamole/guacamole_0.6.0-1~nd+1_all.deb Size: 277608 SHA256: ada9b621c7f57e36ff8722e8b187fb30cbf293fe6fd7ecf8715baeac88239e81 SHA1: 6359e73297b027d6210692e05b9c69eabca20070 MD5sum: 3d9919419c971cf623b5f0ec1832115a Description: HTML5 web application for accessing remote desktops Guacamole is an HTML5 web application that provides access to a desktop environment using remote desktop protocols. A centralized server acts as a tunnel and proxy, allowing access to multiple desktops through a web browser. No plugins are needed: the client requires nothing more than a web browser supporting HTML5 and AJAX. Package: guacamole-tomcat Source: guacamole Version: 0.6.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 7 Depends: neurodebian-popularity-contest, debconf, guacamole, tomcat6, libguac-client-vnc0, debconf (>= 0.5) | debconf-2.0 Homepage: http://guacamole.sourceforge.net/ Priority: extra Section: net Filename: pool/main/g/guacamole/guacamole-tomcat_0.6.0-1~nd+1_all.deb Size: 5164 SHA256: b13a9f5de4bb0b00a2711a3d003a09d9595f5c9ab3734d3f01ce9dbd00732c25 SHA1: aa4e0a55a61260617777ccb2b5c96e072d300524 MD5sum: 13cb30f66b360e09322236cb119d69f6 Description: Tomcat-based Guacamole install with VNC support Guacamole is an HTML5 web application that provides access to a desktop environment using remote desktop protocols. A centralized server acts as a tunnel and proxy, allowing access to multiple desktops through a web browser. No plugins are needed: the client requires nothing more than a web browser supporting HTML5 and AJAX. . This metapackage depends on Tomcat, Guacamole, and the VNC support plugin for guacamole. Guacamole is automatically installed and configured under Tomcat. Package: libfreenect-doc Source: libfreenect Version: 1:0.1.2+dfsg-6~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 482 Depends: neurodebian-popularity-contest Multi-Arch: foreign Homepage: http://openkinect.org/ Priority: extra Section: doc Filename: pool/main/libf/libfreenect/libfreenect-doc_0.1.2+dfsg-6~nd+1_all.deb Size: 90816 SHA256: 6f15ee9429e9a77208075aa20ac716d28777bb6ae56b6d928d2394f8eba532f5 SHA1: f983624268cf3366f85733d527b08deb8581e0be MD5sum: 812834b439f4a80838af58f2d5ecacc4 Description: library for accessing Kinect device -- documentation libfreenect is a cross-platform library that provides the necessary interfaces to activate, initialize, and communicate data with the Kinect hardware. Currently, the library supports access to RGB and depth video streams, motors, accelerometer and LED and provide binding in different languages (C++, Python...) . This library is the low level component of the OpenKinect project which is an open community of people interested in making use of the Xbox Kinect hardware with PCs and other devices. . This package contains the documentation of the API of libfreenect. Package: neurodebian-desktop Source: neurodebian Version: 0.28~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 141 Depends: ssh-askpass-gnome | ssh-askpass, desktop-base, gnome-icon-theme, neurodebian-popularity-contest Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-desktop_0.28~nd+1_all.deb Size: 114152 SHA256: d241379aaf2e467644b58be3f2e32a7565c7129847fd54926cd5a82c89c72669 SHA1: 3d6c186d77fa4f28a360c1e2744ee826c21cbd5b MD5sum: a4ef8fa8662b749bdcd5861521d9003f Description: neuroscience research environment This package contains NeuroDebian artwork (icons, background image) and a NeuroDebian menu featuring most popular neuroscience tools automatically installed upon initial invocation. Package: neurodebian-dev Source: neurodebian Version: 0.28~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 5746 Depends: devscripts, cowbuilder, neurodebian-keyring Recommends: python, zerofree, moreutils, time, ubuntu-keyring, debian-archive-keyring Suggests: virtualbox-ose, virtualbox-ose-fuse Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-dev_0.28~nd+1_all.deb Size: 5345858 SHA256: 0109bc95a3277f1d22ab26238f6ba2f5a00624cf5bcc447cd73a108c7c956c35 SHA1: b30c711d4dcd2d8d056ae70e13915987bed35e41 MD5sum: a45ea5b9fb8d985290f51241572da28e Description: NeuroDebian development tools neuro.debian.net sphinx website sources and development tools used by NeuroDebian to provide backports for a range of Debian/Ubuntu releases. Package: neurodebian-guest-additions Source: neurodebian Version: 0.28~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 105 Pre-Depends: virtualbox-ose-guest-utils, virtualbox-ose-guest-x11, virtualbox-ose-guest-dkms Depends: sudo, neurodebian-desktop, gdm | gdm3, update-manager-gnome, update-notifier Recommends: chromium-browser Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-guest-additions_0.28~nd+1_all.deb Size: 13622 SHA256: 111f1435c2a5e29a61a92dea16f0a576c1af5edfab90a19cd7543c34381d5716 SHA1: 328aec452c31259b2dffa67b96d05ed1589ff1e6 MD5sum: f8aef06136d78051cf876801c269dcf5 Description: NeuroDebian guest additions (DO NOT INSTALL OUTSIDE VIRTUALBOX) This package configures a Debian installation as a guest operating system in a VirtualBox-based virtual machine for NeuroDebian. . DO NOT install this package unless you know what you are doing! For example, installation of this package relaxes several security mechanisms. Package: neurodebian-keyring Source: neurodebian Version: 0.28~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 7 Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-keyring_0.28~nd+1_all.deb Size: 6556 SHA256: 53b718ea4fcd7a40d75eaab25576abf3a7475b97a8f88d6d4e18df39e6230fec SHA1: 50648a2dd49540d62bfa4af070ff491351e78ba5 MD5sum: 472df23430fe17692e8da061a08aa6ff Description: GnuPG archive keys of the NeuroDebian archive The NeuroDebian project digitally signs its Release files. This package contains the archive keys used for that. Package: neurodebian-popularity-contest Source: neurodebian Version: 0.28~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 6 Depends: popularity-contest Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-popularity-contest_0.28~nd+1_all.deb Size: 5720 SHA256: 742fbad04b42d4403bd747c39ee494d3874feddb4490253fa7beedc76c7c0f7e SHA1: 6140882188957334b7b1bee3343580e51830cc51 MD5sum: 6d340546440561c6dc415371b7482b73 Description: Helper for NeuroDebian popularity contest submissions This package is a complement to the generic popularity-contest package to enable anonymous submission of usage statistics to NeuroDebian in addition to the popcon submissions to the underlying distribution (e.g. Debian or Ubuntu) popcon server. . Your participation in popcon is important for following reasons: - Popular packages receive more attention from developers, bugs are fixed faster and updates are provided quicker. - Assure that we do not drop support for a previous release of Debian or Ubuntu while are active users. - User statistics could be used by upstream research software developers to acquire funding for continued development. . It has an effect only if you have decided to participate in the Popularity Contest of your distribution, i.e. Debian or Ubuntu. You can always enable or disable your participation in popcon by running 'dpkg-reconfigure popularity-contest' as root. Package: nifti2dicom-data Source: nifti2dicom Version: 0.4.5-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 606 Depends: neurodebian-popularity-contest Homepage: https://github.com/biolab-unige/nifti2dicom Priority: optional Section: science Filename: pool/main/n/nifti2dicom/nifti2dicom-data_0.4.5-1~nd+1_all.deb Size: 614932 SHA256: 470880703592fab1d6b6635ef65e3b79f4701022018537e65fba4e2fd33adb01 SHA1: 454735537a9b01e0bf39d1ad7b00a842d3768139 MD5sum: c444b61f29e753aae382e9560ae2ab64 Description: data files for nifti2dicom This package contains architecture-independent supporting data files required for use with nifti2dicom, such as such as documentation, icons, and translations. Package: nuitka Version: 0.3.23.1+ds-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1325 Depends: neurodebian-popularity-contest, g++-4.6 (>= 4.6.1) | g++-4.5, scons (>= 2.0.0), python-dev (>= 2.6.6-2), python (>= 2.6.6-7~) Recommends: python-lxml (>= 2.3), python-qt4 (>= 4.8.6) Suggests: ccache Homepage: http://nuitka.net Priority: optional Section: python Filename: pool/main/n/nuitka/nuitka_0.3.23.1+ds-1~nd+1_all.deb Size: 331654 SHA256: eba10a4455c20b4c77d6d6f3d32b39dd5850bceea570524524f40b7da29b0f04 SHA1: 725ec8e8346c9e40dd5d8aa772a2845716c80c75 MD5sum: 6620bd72cc8ab081874eea6140e1f572 Description: Python compiler with full language support and CPython compatibility This Python compiler achieves full language compatibility and compiles Python code into compiled objects that are not second class to pure Python objects at all. Package: packaging-tutorial Version: 0.5~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1155 Depends: neurodebian-popularity-contest Priority: extra Section: doc Filename: pool/main/p/packaging-tutorial/packaging-tutorial_0.5~nd+1_all.deb Size: 1111034 SHA256: 3410f99232ee6a8cff11c2d97b4cd50f56d4ae5d71f5dadaa077d92457842996 SHA1: 8756d44b1a608c8c0e29fde5813d6146e67c5026 MD5sum: 7d653f7b7bc96d627e73720627567851 Description: introduction to Debian packaging This tutorial is an introduction to Debian packaging. It teaches prospective developers how to modify existing packages, how to create their own packages, and how to interact with the Debian community. In addition to the main tutorial, it includes three practical sessions on modifying the 'grep' package, and packaging the 'gnujump' game and a Java library. Package: psychopy Version: 1.73.06.dfsg-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4463 Depends: neurodebian-popularity-contest, python (>= 2.4), python-support (>= 0.90.0), python-pyglet | python-pygame, python-opengl, python-numpy, python-scipy, python-matplotlib, python-lxml, python-configobj Recommends: python-wxgtk2.8, python-pyglet, python-pygame, python-openpyxl, python-imaging, python-serial, libavbin0, ipython Suggests: python-iolabs, python-pyxid Homepage: http://www.psychopy.org Priority: optional Section: science Filename: pool/main/p/psychopy/psychopy_1.73.06.dfsg-1~nd+1_all.deb Size: 2688728 SHA256: 50180e06888296862a93e58fa7a813575f673b11459b99fad415bba6328c56bf SHA1: 40986f97e19748ed2fe43af0e57c2bcc1006fa6e MD5sum: 9bbf64094767294e0f1d26ebd83ce196 Description: environment for creating psychology stimuli in Python PsychoPy provides an environment for creating psychology stimuli using Python scripting language. It combines the graphical strengths of OpenGL with easy Python syntax to give psychophysics a free and simple stimulus presentation and control package. . The goal is to provide, for the busy scientist, tools to control timing and windowing and a simple set of pre-packaged stimuli and methods. PsychoPy features . - IDE GUI for coding in a powerful scripting language (Python) - Builder GUI for rapid development of stimulation sequences - Use of hardware-accelerated graphics (OpenGL) - Integration with Spectrascan PR650 for easy monitor calibration - Simple routines for staircase and constant stimuli experimental methods as well as curve-fitting and bootstrapping - Simple (or complex) GUIs via wxPython - Easy interfaces to joysticks, mice, sound cards etc. via PyGame - Video playback (MPG, DivX, AVI, QuickTime, etc.) as stimuli Python-Version: 2.6, 2.7 Package: psychtoolbox-3-common Source: psychtoolbox-3 Version: 3.0.9+svn2579.dfsg1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 47050 Depends: neurodebian-popularity-contest Recommends: subversion Homepage: http://psychtoolbox.org Priority: extra Section: science Filename: pool/main/p/psychtoolbox-3/psychtoolbox-3-common_3.0.9+svn2579.dfsg1-1~nd+1_all.deb Size: 19434030 SHA256: b9a74e5ec9e31d2346e55b156072e21531b62373e4723d6c2fca201a5c186da3 SHA1: 1269e6c7d0b877a16ad376eace4b4b87a29bf7fa MD5sum: 68d9a493aee2dd28da0e8fc48783c47b Description: toolbox for vision research -- arch/interpreter independent part Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains architecture independent files (such as .m scripts) Package: python-joblib Source: joblib Version: 0.6.4-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 178 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0) Recommends: python-numpy, python-nose, python-simplejson Homepage: http://packages.python.org/joblib/ Priority: optional Section: python Filename: pool/main/j/joblib/python-joblib_0.6.4-1~nd+1_all.deb Size: 51836 SHA256: 41c863ccd9bc38593a9579395123e9cc6141abaad298aab08cb19b5db994add4 SHA1: 7de5cfabcc304803ac2060ff6d4c04e39d3b5cbc MD5sum: eff58c8425d78c1d0b08588151359061 Description: tools to provide lightweight pipelining in Python Joblib is a set of tools to provide lightweight pipelining in Python. In particular, joblib offers: - transparent disk-caching of the output values and lazy re-evaluation (memoize pattern) - easy simple parallel computing - logging and tracing of the execution . Joblib is optimized to be fast and robust in particular on large, long-running functions and has specific optimizations for numpy arrays. Package: python-lazyarray Source: lazyarray Version: 0.1.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 19 Depends: neurodebian-popularity-contest, python2.7 | python2.6, python (>= 2.6.6-7~), python (<< 2.8), python-numpy Homepage: http://bitbucket.org/apdavison/lazyarray/ Priority: optional Section: python Filename: pool/main/l/lazyarray/python-lazyarray_0.1.0-1~nd+1_all.deb Size: 7328 SHA256: dbb35c5dc374c7bc62e95a56d3a14314105025852a66ba61f2472e4ea5b8be65 SHA1: a7bdc4dd42a3963a810fe0c0e73e4ad7ed6a7995 MD5sum: 1d204a47646dc6ed4152895171c87bc9 Description: Python module providing a NumPy-compatible lazily-evaluated array The 'larray' class is a NumPy-compatible numerical array where operations on the array (potentially including array construction) are not performed immediately, but are delayed until evaluation is specifically requested. Evaluation of only parts of the array is also possible. Consequently, use of an 'larray' can potentially save considerable computation time and memory in cases where arrays are used conditionally, or only parts of an array are used (for example in distributed computation, in which each MPI node operates on a subset of the elements of the array). Package: python-mdp Source: mdp Version: 3.2+git78-g7db3c50-3~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1523 Depends: neurodebian-popularity-contest, python2.7 | python2.6, python (>= 2.6.6-7~), python (<< 2.8), python-numpy Recommends: python-scipy, python-libsvm, python-joblib, python-scikits-learn | python-sklearn, python-pp Suggests: python-py, shogun-python-modular Enhances: python-mvpa Homepage: http://mdp-toolkit.sourceforge.net/ Priority: optional Section: python Filename: pool/main/m/mdp/python-mdp_3.2+git78-g7db3c50-3~nd+1_all.deb Size: 482118 SHA256: 24e6dd391ec24d010fe4be95667fe752c98de13783aa92e9689a311fcf293ee5 SHA1: 0031ca284ce3d7b32591f4313fee4426eec343fa MD5sum: 38347ef098f945cb819eb6f7cd2faea0 Description: Modular toolkit for Data Processing Python data processing framework for building complex data processing software by combining widely used machine learning algorithms into pipelines and networks. Implemented algorithms include: Principal Component Analysis (PCA), Independent Component Analysis (ICA), Slow Feature Analysis (SFA), Independent Slow Feature Analysis (ISFA), Growing Neural Gas (GNG), Factor Analysis, Fisher Discriminant Analysis (FDA), and Gaussian Classifiers. . This package contains MDP for Python 2. Package: python-mpi4py-doc Source: mpi4py Version: 1.3-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 284 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-mpi4py Homepage: http://code.google.com/p/mpi4py/ Priority: extra Section: doc Filename: pool/main/m/mpi4py/python-mpi4py-doc_1.3-1~nd+1_all.deb Size: 79200 SHA256: 37d54a31f1699cbc1d666506cf987751fb1fcdce617ce6207ba6db0866bce976 SHA1: 5b9f6f6359b83eee1e9f6485af70b7e72cc4e816 MD5sum: ba6a2ae4a4d36eb373b06b425acf436e Description: bindings of the MPI standard -- documentation MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. . mpi4py is constructed on top of the MPI-1/MPI-2 specification and provides an object oriented interface which closely follows MPI-2 C++ bindings. It supports point-to-point (sends, receives) and collective (broadcasts, scatters, gathers) communications of any picklable Python object as well as optimized communications of Python object exposing the single-segment buffer interface (NumPy arrays, builtin bytes/string/array objects). . This package provides HTML rendering of the user's manual. Package: python-mvpa Source: pymvpa Version: 0.4.8-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3547 Depends: neurodebian-popularity-contest, python (>= 2.5), python-numpy, python-support (>= 0.90.0), python2.7, python-mvpa-lib (>= 0.4.8-1~nd+1) Recommends: python-nifti, python-psyco, python-mdp, python-scipy, shogun-python-modular, python-pywt, python-matplotlib, python-reportlab Suggests: fslview, fsl, python-nose, python-lxml, python-openopt, python-rpy, python-mvpa-doc Provides: python2.6-mvpa, python2.7-mvpa Homepage: http://www.pymvpa.org Priority: optional Section: python Filename: pool/main/p/pymvpa/python-mvpa_0.4.8-1~nd+1_all.deb Size: 2205002 SHA256: 41465c88b5c5d855bb5cfb183ef31b621031eb691ba5a8f3ac481bec2fe61bd8 SHA1: 40e31da97e30b6c2af3f28dfcd4b255560f765e2 MD5sum: b36ff1ec87893ae209624c75e8934b87 Description: multivariate pattern analysis with Python PyMVPA eases pattern classification analyses of large datasets, with an accent on neuroimaging. It provides high-level abstraction of typical processing steps (e.g. data preparation, classification, feature selection, generalization testing), a number of implementations of some popular algorithms (e.g. kNN, GNB, Ridge Regressions, Sparse Multinomial Logistic Regression), and bindings to external machine learning libraries (libsvm, shogun). . While it is not limited to neuroimaging data (e.g. fMRI, or EEG) it is eminently suited for such datasets. Python-Version: 2.6, 2.7 Package: python-mvpa-doc Source: pymvpa Version: 0.4.8-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 37565 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-mvpa Homepage: http://www.pymvpa.org Priority: optional Section: doc Filename: pool/main/p/pymvpa/python-mvpa-doc_0.4.8-1~nd+1_all.deb Size: 8454400 SHA256: 9f730cbbc6fdcfce45ecca5ef036d74ea074eaedf2b4105fde7baf0028f11350 SHA1: 4510a24072100ffb1d4220f2d66d21abde733b9d MD5sum: 32c7629e7f9e01d9f7ca4d2c621b85be Description: documentation and examples for PyMVPA PyMVPA documentation in various formats (HTML, TXT) including * User manual * Developer guidelines * API documentation * BibTeX references file . Additionally, all example scripts shipped with the PyMVPA sources are included. Package: python-mvpa2 Source: pymvpa2 Version: 2.1.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4105 Depends: neurodebian-popularity-contest, python (>= 2.4), python-numpy, python-support (>= 0.90.0), python-mvpa2-lib (>= 2.1.0-1~nd+1) Recommends: python-h5py, python-lxml, python-matplotlib, python-mdp, python-nibabel, python-psutil, python-psyco, python-pywt, python-reportlab, python-scipy, python-sklearn, shogun-python-modular, liblapack-dev Suggests: fslview, fsl, python-mvpa2-doc, python-nose, python-openopt, python-rpy2 Provides: python2.6-mvpa2, python2.7-mvpa2 Homepage: http://www.pymvpa.org Priority: optional Section: python Filename: pool/main/p/pymvpa2/python-mvpa2_2.1.0-1~nd+1_all.deb Size: 2354480 SHA256: eed61d48e090d43d5f91d375ceb57fc20b218a3837c75a204d1903f1b59505d6 SHA1: f941a688cb6196154993402215d2ff81f6a004a3 MD5sum: db7d563eb8edce016baecf289a2ed3ec Description: multivariate pattern analysis with Python v. 2 PyMVPA eases pattern classification analyses of large datasets, with an accent on neuroimaging. It provides high-level abstraction of typical processing steps (e.g. data preparation, classification, feature selection, generalization testing), a number of implementations of some popular algorithms (e.g. kNN, Ridge Regressions, Sparse Multinomial Logistic Regression), and bindings to external machine learning libraries (libsvm, shogun). . While it is not limited to neuroimaging data (e.g. fMRI, or EEG) it is eminently suited for such datasets. . This is a package of PyMVPA v.2. Previously released stable version is provided by the python-mvpa package. Python-Version: 2.6, 2.7 Package: python-mvpa2-doc Source: pymvpa2 Version: 2.1.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 16043 Depends: neurodebian-popularity-contest, libjs-jquery, libjs-underscore Suggests: python-mvpa2 Homepage: http://www.pymvpa.org Priority: optional Section: doc Filename: pool/main/p/pymvpa2/python-mvpa2-doc_2.1.0-1~nd+1_all.deb Size: 4911588 SHA256: c304d190aef38ea7b3c52996d1cef59fc7e2f137cba4f02cbd7630c3caa16dc3 SHA1: f921bfef0448c65c3c330ab4531c424a54e6034c MD5sum: 17e98b145e0fb36964397d80706037e1 Description: documentation and examples for PyMVPA v. 2 This is an add-on package for the PyMVPA framework. It provides a HTML documentation (tutorial, FAQ etc.) as well as example scripts. Package: python-neo Source: neo Version: 0.2.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2204 Depends: neurodebian-popularity-contest, python2.7 | python2.6, python (>= 2.6.6-7~), python (<< 2.8), python-numpy (>= 1:1.3~), python-quantities (>= 0.9.0~) Recommends: python-scipy (>= 0.8~), python-tables (>= 2.2~), libjs-jquery, libjs-underscore Homepage: http://neuralensemble.org/trac/neo Priority: extra Section: python Filename: pool/main/n/neo/python-neo_0.2.0-1~nd+1_all.deb Size: 1382874 SHA256: 59ff26940fc53d1cdbd7dc9319c5247a36ebdba7308a66051d52a6cfd8f39a4a SHA1: fb983cdf4ee7efca0b9951e4026efa07939a3f50 MD5sum: e7d065a1d9177eb62eebf8a66bfb31ea Description: Python IO library for electrophysiological data formats NEO stands for Neural Ensemble Objects and is a project to provide common classes and concepts for dealing with electro-physiological (in vivo and/or simulated) data to facilitate collaborative software/algorithm development. In particular Neo provides: a set a classes for data representation with precise definitions, an IO module with a simple API, documentation, and a set of examples. . NEO offers support for reading data from numerous proprietary file formats (e.g. Spike2, Plexon, AlphaOmega, BlackRock, Axon), read/write support for various open formats (e.g. KlustaKwik, Elan, WinEdr, WinWcp, PyNN), as well as support common file formats, such as HDF5 with Neo-structured content (NeoHDF5, NeoMatlab). . Neo's IO facilities can be seen as a pure-Python and open-source Neuroshare replacement. Package: python-nibabel Source: nibabel Version: 1.2.2-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4139 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0), python-numpy, python-scipy Recommends: python-dicom, python-fuse Suggests: python-nibabel-doc Provides: python2.6-nibabel, python2.7-nibabel Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: python Filename: pool/main/n/nibabel/python-nibabel_1.2.2-1~nd+1_all.deb Size: 1822314 SHA256: 7429c239c5ad69d875788bd7679ea195fcb9d69ce1aae27b8b22ac380f648040 SHA1: 6db1f0c58ad393232a075d93d14c7b302d9b116e MD5sum: 67a22b8ae05f5c9583edc15252ba42f7 Description: Python bindings to various neuroimaging data formats NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. . This package also provides a commandline tools: . - dicomfs - FUSE filesystem on top of a directory with DICOMs - nib-ls - 'ls' for neuroimaging files - parrec2nii - for conversion of PAR/REC to NIfTI images Python-Version: 2.6, 2.7 Package: python-nibabel-doc Source: nibabel Version: 1.2.2-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2443 Depends: neurodebian-popularity-contest, libjs-jquery Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: doc Filename: pool/main/n/nibabel/python-nibabel-doc_1.2.2-1~nd+1_all.deb Size: 447570 SHA256: 9a2bb045175699219f681c4a77c3b55c2f3c01584003ea8788e976c2deaca291 SHA1: c7aeef952b23786d15a8865593858465ef579975 MD5sum: 9140de67d4c6517d83efa54fe675d4e1 Description: documentation for NiBabel NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. . This package provides the documentation in HTML format. Package: python-nipy Source: nipy Version: 0.2.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2777 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-numpy (>= 1:1.2), python-support (>= 0.90.0), python-scipy, python-nibabel, python-nipy-lib (>= 0.2.0-1~nd+1) Recommends: python-matplotlib, mayavi2, python-sympy Suggests: python-mvpa Provides: python2.6-nipy, python2.7-nipy Homepage: http://neuroimaging.scipy.org Priority: extra Section: python Filename: pool/main/n/nipy/python-nipy_0.2.0-1~nd+1_all.deb Size: 763512 SHA256: cb0b55cba5547edc01d2586a5c565f35cf542e3b920ae2093b2e0faa6c8061e3 SHA1: 7b65acab3d1851cc30cfa4e6dcba13387de77a53 MD5sum: e2ad09e52d01ca7ad5bcfb0bf34bb890 Description: Analysis of structural and functional neuroimaging data NiPy is a Python-based framework for the analysis of structural and functional neuroimaging data. It provides functionality for - General linear model (GLM) statistical analysis - Combined slice time correction and motion correction - General image registration routines with flexible cost functions, optimizers and re-sampling schemes - Image segmentation - Basic visualization of results in 2D and 3D - Basic time series diagnostics - Clustering and activation pattern analysis across subjects - Reproducibility analysis for group studies Python-Version: 2.6, 2.7 Package: python-nipy-doc Source: nipy Version: 0.2.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 9981 Depends: neurodebian-popularity-contest, libjs-jquery Recommends: python-nipy Homepage: http://neuroimaging.scipy.org Priority: extra Section: doc Filename: pool/main/n/nipy/python-nipy-doc_0.2.0-1~nd+1_all.deb Size: 3763510 SHA256: f2a881db5dd689b601a0bfee42dd008954c0811523daa6405acd4a4c9f298617 SHA1: 9eb1a09efe4c7c9466271af66f563b18db2f1d5e MD5sum: 0ad5192e1871b9548107407313ea4a10 Description: documentation and examples for NiPy This package contains NiPy documentation in various formats (HTML, TXT) including * User manual * Developer guidelines * API documentation Package: python-nipype Source: nipype Version: 0.6.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2320 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-scipy, python-simplejson, python-traits (>= 4.0) | python-traits4, python-nibabel (>= 1.0.0~), python-networkx (>= 1.3), python-cfflib Recommends: ipython, python-nose, graphviz Suggests: fsl, afni, python-nipy, slicer, matlab-spm8, python-pyxnat Provides: python2.6-nipype, python2.7-nipype Homepage: http://nipy.sourceforge.net/nipype/ Priority: optional Section: python Filename: pool/main/n/nipype/python-nipype_0.6.0-1~nd+1_all.deb Size: 521724 SHA256: 31032d8f53e4dae48dccd26061cdebeaebe277814a3fbd0808df5d7e80167794 SHA1: 86058e978a39a6a6405e2b386659caca87f85612 MD5sum: aea999a55c8f894e412958312a4fb857 Description: Neuroimaging data analysis pipelines in Python Nipype interfaces Python to other neuroimaging packages and creates an API for specifying a full analysis pipeline in Python. Currently, it has interfaces for SPM, FSL, AFNI, Freesurfer, but could be extended for other packages (such as lipsia). Package: python-nipype-doc Source: nipype Version: 0.6.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 12433 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-nipype Homepage: http://nipy.sourceforge.net/nipype/ Priority: optional Section: doc Filename: pool/main/n/nipype/python-nipype-doc_0.6.0-1~nd+1_all.deb Size: 5727448 SHA256: 522902b32cb88a54b81966bb4dd59a92cb0468a5ea17daf0275f4bc9fc4cad25 SHA1: a8d0691ab4c82d59b0b4732a84f6b8bc047b8ed8 MD5sum: ffdb91454a5d00614b85994bb3b4fabe Description: Neuroimaging data analysis pipelines in Python -- documentation Nipype interfaces Python to other neuroimaging packages and creates an API for specifying a full analysis pipeline in Python. Currently, it has interfaces for SPM, FSL, AFNI, Freesurfer, but could be extended for other packages (such as lipsia). . This package contains Nipype examples and documentation in various formats. Package: python-nitime Source: nitime Version: 0.4-2~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 9294 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-numpy, python-scipy Recommends: python-matplotlib, python-nose, python-nibabel, python-networkx Homepage: http://nipy.org/nitime Priority: extra Section: python Filename: pool/main/n/nitime/python-nitime_0.4-2~nd+1_all.deb Size: 3908880 SHA256: 9b84b1e4c4790ccc493da1e3bf4821527daeeea31373bc9ad826ca06310b069d SHA1: 6cd41f955262beada04f56a20e76bec57566a89d MD5sum: 39ba98d1a26fb31da6f01dd7e2158aa9 Description: timeseries analysis for neuroscience data (nitime) Nitime is a Python module for time-series analysis of data from neuroscience experiments. It contains a core of numerical algorithms for time-series analysis both in the time and spectral domains, a set of container objects to represent time-series, and auxiliary objects that expose a high level interface to the numerical machinery and make common analysis tasks easy to express with compact and semantically clear code. Package: python-nitime-doc Source: nitime Version: 0.4-2~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 6842 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-nitime Homepage: http://nipy.org/nitime Priority: extra Section: doc Filename: pool/main/n/nitime/python-nitime-doc_0.4-2~nd+1_all.deb Size: 5338022 SHA256: 0898b98c18494ae1229649b0999f9c4d7a3d5f4879ca9ba759b5f003559b79f3 SHA1: 96d08bb174a9d70283889f9958b7a3d843036720 MD5sum: e3a376c097907d751641e5f0a77e5400 Description: timeseries analysis for neuroscience data (nitime) -- documentation Nitime is a Python module for time-series analysis of data from neuroscience experiments. . This package provides the documentation in HTML format. Package: python-openopt Source: openopt Version: 0.38+svn1589-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 954 Depends: neurodebian-popularity-contest, python (>= 2.5), python-support (>= 0.90.0), python-numpy Recommends: python-scipy, python-cvxopt, python-matplotlib, python-setproctitle Suggests: lp-solve Conflicts: python-scikits-openopt Replaces: python-scikits-openopt Provides: python2.6-openopt, python2.7-openopt Homepage: http://www.openopt.org Priority: extra Section: python Filename: pool/main/o/openopt/python-openopt_0.38+svn1589-1~nd+1_all.deb Size: 245088 SHA256: 720267e7fc1297916d72081d7bffedfc4e911f4cba267f9e83f65ee6cf7eac3b SHA1: 2a31c5c6bad612fa5d880b23d6c2c2628c1aef20 MD5sum: 5ffcdd148bf0a2e648d7c3960953fc20 Description: Python module for numerical optimization Numerical optimization framework developed in Python which provides connections to lots of solvers with easy and unified OpenOpt syntax. Problems which can be tackled with OpenOpt * Linear Problem (LP) * Mixed-Integer Linear Problem (MILP) * Quadratic Problem (QP) * Non-Linear Problem (NLP) * Non-Smooth Problem (NSP) * Non-Linear Solve Problem (NLSP) * Least Squares Problem (LSP) * Linear Least Squares Problem (LLSP) * Mini-Max Problem (MMP) * Global Problem (GLP) . A variety of solvers is available (e.g. IPOPT, ALGENCAN). Python-Version: 2.6, 2.7 Package: python-openpyxl Source: openpyxl Version: 1.5.8-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 357 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0) Recommends: python-nose Homepage: http://bitbucket.org/ericgazoni/openpyxl/ Priority: optional Section: python Filename: pool/main/o/openpyxl/python-openpyxl_1.5.8-1~nd+1_all.deb Size: 71790 SHA256: 573946bde70e1d9f92b4c1b16b44cc3c380dd40a8c45b32c849d3388dc1e2bb9 SHA1: b1f2724d2f023befbbd64e3a8857c5b25ed7d058 MD5sum: b8c5557b275a4ddf7e271bc9f9df17f5 Description: module to read/write OpenXML xlsx/xlsm files Openpyxl is a pure Python module to read/write Excel 2007 (OpenXML) xlsx/xlsm files. Package: python-pandas Source: pandas Version: 0.8.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2793 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0), python-numpy (>= 1:1.6~), python-dateutil, python-pandas-lib (>= 0.8.1-1~nd+1) Recommends: python-scipy, python-matplotlib, python-tables, python-tz, python-xlrd, python-statsmodels, python-openpyxl, python-xlwt Suggests: python-pandas-doc Provides: python2.6-pandas, python2.7-pandas Homepage: http://pandas.sourceforge.net Priority: optional Section: python Filename: pool/main/p/pandas/python-pandas_0.8.1-1~nd+1_all.deb Size: 628614 SHA256: dac80069c373b34cd8353445b866a75d0ee6978d07acc4c57ab4481608e9a514 SHA1: f0312eba6a26a00d7dbffc2fff2a54324b62958a MD5sum: 0e5f6af21919a0722a4172bb978a9d51 Description: data structures for "relational" or "labeled" data pandas is a Python package providing fast, flexible, and expressive data structures designed to make working with "relational" or "labeled" data both easy and intuitive. It aims to be the fundamental high-level building block for doing practical, real world data analysis in Python. pandas is well suited for many different kinds of data: . - Tabular data with heterogeneously-typed columns, as in an SQL table or Excel spreadsheet - Ordered and unordered (not necessarily fixed-frequency) time series data. - Arbitrary matrix data (homogeneously typed or heterogeneous) with row and column labels - Any other form of observational / statistical data sets. The data actually need not be labeled at all to be placed into a pandas data structure Package: python-pyentropy Source: pyentropy Version: 0.4.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 73 Depends: neurodebian-popularity-contest, python, python-support (>= 0.90.0), python-numpy (>= 1.3) Recommends: python-scipy Suggests: python-nose Provides: python2.6-pyentropy, python2.7-pyentropy Homepage: http://code.google.com/p/pyentropy Priority: extra Section: python Filename: pool/main/p/pyentropy/python-pyentropy_0.4.1-1~nd+1_all.deb Size: 21334 SHA256: 3ab479e9d42286158d724eb219d6205e3c8071a2a8fd6436afc501b57ecf086b SHA1: 19b81597aeb2806a30580c43b1fcf5f5ad3d586d MD5sum: 662336ec73a1d4c272a6d2763ef118df Description: Python module for estimation information theoretic quantities A Python module for estimation of entropy and information theoretic quantities using cutting edge bias correction methods, such as * Panzeri-Treves (PT) * Quadratic Extrapolation (QE) * Nemenman-Shafee-Bialek (NSB) Python-Version: 2.6, 2.7 Package: python-pynn Source: pynn Version: 0.7.4-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 778 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0) Recommends: python-jinja2, python-cheetah Suggests: python-neuron, python-brian, python-csa Homepage: http://neuralensemble.org/trac/PyNN Priority: extra Section: python Filename: pool/main/p/pynn/python-pynn_0.7.4-1~nd+1_all.deb Size: 192252 SHA256: 3ff4c5c883a1c5bb02a2be535fa1dcd948c85255fdcb77c96f0409962c746ec5 SHA1: ae69cf3effd0755cd0ce1aa67082b7f8263e0c34 MD5sum: 942acc8914d772f0cb8350f54ad5173a Description: simulator-independent specification of neuronal network models PyNN allows for coding a model once and run it without modification on any simulator that PyNN supports (currently NEURON, NEST, PCSIM and Brian). PyNN translates standard cell-model names and parameter names into simulator-specific names. Package: python-quantities Version: 0.10.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 323 Depends: neurodebian-popularity-contest, python2.7 | python2.6, python (>= 2.6.6-7~), python (<< 2.8), python-numpy (>= 1.4) Homepage: http://packages.python.org/quantities/ Priority: extra Section: python Filename: pool/main/p/python-quantities/python-quantities_0.10.1-1~nd+1_all.deb Size: 62610 SHA256: 24764ab44e8e2357cdb8d4882acce352d96b34ed6b3af8be217617eb51848f83 SHA1: 9367905e8af4cb696831c327b20e43a3e2d52616 MD5sum: d08b442a214c35f1e1f9fa595d311cf6 Description: Library for computation of physical quantities with units, based on numpy Quantities is designed to handle arithmetic and conversions of physical quantities, which have a magnitude, dimensionality specified by various units, and possibly an uncertainty. Quantities builds on the popular numpy library and is designed to work with numpy ufuncs, many of which are already supported. Package: python-scikits-learn Source: scikit-learn Version: 0.11.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 30 Depends: neurodebian-popularity-contest, python-sklearn, python (>= 2.6), python-support (>= 0.90.0) Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: oldlibs Filename: pool/main/s/scikit-learn/python-scikits-learn_0.11.0-1~nd+1_all.deb Size: 22866 SHA256: 01234353863d8c5e32a3721fcc18218c309721199aaef89d6612a94610a06bd1 SHA1: c785594f203c192167bd228651a7937d7cb02300 MD5sum: f401fba13f899c3521e4b9e30c9e81c9 Description: transitional compatibility package for scikits.learn -> sklearn migration Provides old namespace (scikits.learn) and could be removed if dependent code migrated to use sklearn for clarity of the namespace. Package: python-scikits.statsmodels Source: statsmodels Version: 0.4.2-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 22 Depends: neurodebian-popularity-contest, python-statsmodels, python (>= 2.5), python-support (>= 0.90.0) Homepage: http://statsmodels.sourceforge.net/ Priority: extra Section: oldlibs Filename: pool/main/s/statsmodels/python-scikits.statsmodels_0.4.2-1~nd+1_all.deb Size: 10262 SHA256: 5a1ec9605a89c3f19ea93e03977c5696e0788c3d14aae128d08349b344d8096b SHA1: 03cd323aca7b3aaa6267e90a2a913b9a952d40e3 MD5sum: 35729332919cbc14d7622507553402bd Description: transitional compatibility package for statsmodels migration Provides old namespace (scikits.statsmodels) and could be removed if dependent code migrated to use statsmodels for clarity of the namespace. Package: python-scikits.statsmodels-doc Source: statsmodels Version: 0.3.1-4~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 15096 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-scikits.statsmodels Conflicts: python-scikits-statsmodels-doc Replaces: python-scikits-statsmodels-doc Homepage: http://statsmodels.sourceforge.net/ Priority: extra Section: doc Filename: pool/main/s/statsmodels/python-scikits.statsmodels-doc_0.3.1-4~nd+1_all.deb Size: 1894226 SHA256: cd2772a5572779e19faeaeed78f056d1c1c2cdb363af2b61a62bf5869991b627 SHA1: 3fbe0791b5753270777ad088300273615771b19a MD5sum: db4a944c73e6085af650252f7beb3b85 Description: documentation and examples for python-scikits.statsmodels This package contains HTML documentation and example scripts for python-scikits.statsmodels. Package: python-skimage Source: skimage Version: 0.6.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3642 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-numpy, python-support (>= 0.90.0), python2.6, python-scipy (>= 0.9), python-skimage-lib (>= 0.6.1-1~nd+1), libfreeimage3 Recommends: python-nose, python-matplotlib (>= 1.0), python-imaging Suggests: python-skimage-doc, python-opencv Provides: python2.6-skimage, python2.7-skimage Homepage: http://scikits-image.org Priority: optional Section: python Filename: pool/main/s/skimage/python-skimage_0.6.1-1~nd+1_all.deb Size: 2539226 SHA256: a0a9f2bbce4b28ded7277a251d0ba2fed2ebc3e8a0a56a846bea745ea0cfb968 SHA1: cd5947f22982a94026dc30c3aa21b354cee77f05 MD5sum: 5b7dca9d533b708a2a0d5a7f674da02f Description: Python modules for image processing scikits-image is a collection of image processing algorithms for Python. It performs tasks such as image loading, filtering, morphology, segmentation, color conversions, and transformations. Package: python-skimage-doc Source: skimage Version: 0.6.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4893 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-skimage Homepage: http://scikits-image.org Priority: optional Section: doc Filename: pool/main/s/skimage/python-skimage-doc_0.6.1-1~nd+1_all.deb Size: 3608462 SHA256: 780fd10f98b0e07d7177e2043f9038f50e0ae28f5604477b490148f357af70a0 SHA1: 75b9529baa59de3e31c374a0f25dd9a4352ff1cd MD5sum: 4d806fe7a5168b1558284da7d4670de9 Description: Documentation and examples for scikits-image This package contains documentation and example scripts for python-skimage. Package: python-sklearn Source: scikit-learn Version: 0.11.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2500 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0), python-numpy, python-scipy, python-sklearn-lib (>= 0.11.0-1~nd+1) Recommends: python-nose, python-psyco, python-matplotlib, python-joblib (>= 0.4.5) Suggests: python-dap, python-scikits-optimization, python-sklearn-doc, ipython Enhances: python-mdp, python-mvpa2 Breaks: python-scikits-learn (<< 0.9~) Replaces: python-scikits-learn (<< 0.9~) Provides: python2.6-sklearn, python2.7-sklearn Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: python Filename: pool/main/s/scikit-learn/python-sklearn_0.11.0-1~nd+1_all.deb Size: 890724 SHA256: 9056bd4f54d98a315c78286b21268624f146591982e71f62ff69ac5a3bde97a1 SHA1: 91ab02ccb0a4aed5a2703f52156cf2c5182f0d3c MD5sum: 88601fb490686312f56711d6685dffa8 Description: Python modules for machine learning and data mining scikit-learn is a collection of Python modules relevant to machine/statistical learning and data mining. Non-exhaustive list of included functionality: - Gaussian Mixture Models - Manifold learning - kNN - SVM (via LIBSVM) Python-Version: 2.6, 2.7 Package: python-sklearn-doc Source: scikit-learn Version: 0.11.0-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 35019 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-sklearn Conflicts: python-scikits-learn-doc Replaces: python-scikits-learn-doc Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: doc Filename: pool/main/s/scikit-learn/python-sklearn-doc_0.11.0-1~nd+1_all.deb Size: 25521112 SHA256: f98c34ec4fb603346675665dd5b78bc8b0e8e0ed410dd94d35aefec98cec8224 SHA1: 30c38dc8dd85a7ae3003fb0c5447663f2659bc11 MD5sum: e7b4232d991e2e197b146fc59059aeae Description: documentation and examples for scikit-learn This package contains documentation and example scripts for python-sklearn. Package: python-statsmodels Source: statsmodels Version: 0.4.2-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 12433 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0), python-numpy, python-scipy, python-statsmodels-lib (>= 0.4.2-1~nd+1) Recommends: python-pandas, python-matplotlib, python-nose, python-joblib Conflicts: python-scikits-statsmodels, python-scikits.statsmodels (<< 0.4) Replaces: python-scikits-statsmodels, python-scikits.statsmodels (<< 0.4) Provides: python2.6-statsmodels, python2.7-statsmodels Homepage: http://statsmodels.sourceforge.net/ Priority: extra Section: python Filename: pool/main/s/statsmodels/python-statsmodels_0.4.2-1~nd+1_all.deb Size: 3104792 SHA256: a81091e1b48cd71e93c566a120872cd491c9fa0a8ca9ed9421a28c779f05f8f4 SHA1: 7ce0061bc0757b101051605b015f9a4754944c38 MD5sum: e2fe656c2074d522e7cecde0d4b5fda3 Description: Python module for the estimation of statistical models statsmodels Python module provides classes and functions for the estimation of several categories of statistical models. These currently include linear regression models, OLS, GLS, WLS and GLS with AR(p) errors, generalized linear models for six distribution families and M-estimators for robust linear models. An extensive list of result statistics are available for each estimation problem. Package: python-statsmodels-doc Source: statsmodels Version: 0.4.2-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 23647 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-statsmodels Conflicts: python-scikits-statsmodels-doc, python-scikits.statsmodels-doc Replaces: python-scikits-statsmodels-doc, python-scikits.statsmodels-doc Homepage: http://statsmodels.sourceforge.net/ Priority: extra Section: doc Filename: pool/main/s/statsmodels/python-statsmodels-doc_0.4.2-1~nd+1_all.deb Size: 7342598 SHA256: dacbb7d4e0cbcac0de0fb1d541ab55c2c4e3c21cc65aaf3b999527f0ace6efb8 SHA1: b313e92edeeeadd3992c44c76d4e4ea37c26792d MD5sum: 43176138c31ec98297cd792d03604bde Description: documentation and examples for statsmodels This package contains HTML documentation and example scripts for python-statsmodels. Package: python-surfer Source: pysurfer Version: 0.3+git15-gae6cbb1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 95 Depends: neurodebian-popularity-contest, python (<< 2.8), python (>= 2.6), python-support (>= 0.90.0), python-numpy, python-scipy, python-nibabel, python-imaging, mayavi2, python-argparse, ipython Recommends: mencoder Homepage: http://pysurfer.github.com Priority: extra Section: python Filename: pool/main/p/pysurfer/python-surfer_0.3+git15-gae6cbb1-1~nd+1_all.deb Size: 28904 SHA256: bf545c8b3b5ece2227156e364694d07e7df8b5c2a98cc662c61077e70539e87d SHA1: 096d69ae640c7a9dbdbd958e260da4745308ac9e MD5sum: e49aa156e4c8f1ab8f34630c44d82bbb Description: visualize Freesurfer's data in Python This is a Python package for visualization and interaction with cortical surface representations of neuroimaging data from Freesurfer. It extends Mayavi’s powerful visualization engine with a high-level interface for working with MRI and MEG data. . PySurfer offers both a command-line interface designed to broadly replicate Freesurfer’s Tksurfer program as well as a Python library for writing scripts to efficiently explore complex datasets. Python-Version: 2.6, 2.7 Package: spm8-common Source: spm8 Version: 8.4667~dfsg.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 18467 Depends: neurodebian-popularity-contest Recommends: spm8-data, spm8-doc Priority: extra Section: science Filename: pool/main/s/spm8/spm8-common_8.4667~dfsg.1-1~nd+1_all.deb Size: 10573658 SHA256: 226ac256f894993c96fc6a40908bf6e47ceab8d4ff9f3af30652c1775edf1213 SHA1: 339aaf8fe8966497fff28cafe3021364675aa6de MD5sum: aa23e361a358e383cb29207af47bf5bf Description: analysis of brain imaging data sequences Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provides the platform-independent M-files. Package: spm8-data Source: spm8 Version: 8.4667~dfsg.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 72987 Depends: neurodebian-popularity-contest Priority: extra Section: science Filename: pool/main/s/spm8/spm8-data_8.4667~dfsg.1-1~nd+1_all.deb Size: 52167698 SHA256: 4a4eeb861f45cf0858446512080c0b2f56b5db493d28826ba5180fd349214910 SHA1: d1c4922bc6fcfdae670687602dd11d3663126406 MD5sum: b31d5e36ca9c135ddcc036ca808b3470 Description: data files for SPM8 Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provide the data files shipped with the SPM distribution, such as various stereotaxic brain space templates and EEG channel setups. Package: spm8-doc Source: spm8 Version: 8.4667~dfsg.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 9370 Depends: neurodebian-popularity-contest Priority: extra Section: doc Filename: pool/main/s/spm8/spm8-doc_8.4667~dfsg.1-1~nd+1_all.deb Size: 8648902 SHA256: b4ee2536e640c2f0a282f3860135bee537c99e28a1d82faf241f6709de0ec628 SHA1: 72570a0e4f49ee16527d7e4f0c8f5d40d925aef2 MD5sum: 7d5c029e5f5aa10a0c0d79bdaeede8d6 Description: manual for SPM8 Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provides the SPM manual in PDF format. Package: vtk-doc Source: vtk Version: 5.8.0-7+b0~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 342007 Depends: neurodebian-popularity-contest, doc-base Suggests: libvtk5-dev, vtk-examples, vtkdata Homepage: http://www.vtk.org/ Priority: optional Section: doc Filename: pool/main/v/vtk/vtk-doc_5.8.0-7+b0~nd+1_all.deb Size: 66710216 SHA256: ef2921e37681f7364119b79457483cd3ca7da8cd063a96438cffe23aeba52938 SHA1: abc4b1ccf35fd6c0cc20f67836fb7ffcbfc69161 MD5sum: b7ef2d7972fe60ad7ce2f891faac4205 Description: VTK class reference documentation The Visualization Toolkit (VTK) is an object oriented, high level library that allows one to easily write C++ programs, Tcl, Python and Java scripts that do 3D visualization. . This package contains exhaustive HTML documentation for the all the documented VTK C++ classes. The documentation was generated using doxygen and some excellent perl scripts from Sebastien Barre et. al. Please read the README.docs in /usr/share/doc/vtk-doc/ for details. The documentation is available under /usr/share/doc/vtk/html. Package: vtk-examples Source: vtk Version: 5.8.0-7+b0~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2521 Depends: neurodebian-popularity-contest Suggests: libvtk5-dev, tcl-vtk, python-vtk, vtk-doc, python, tclsh, libqt4-dev Homepage: http://www.vtk.org/ Priority: optional Section: graphics Filename: pool/main/v/vtk/vtk-examples_5.8.0-7+b0~nd+1_all.deb Size: 578892 SHA256: fab181213376a1077411077e48a5640af76ceb2868302e2e03b18e4e6a0859fd SHA1: e0087beef829cbfd4d09abfd52a4e526b2b11963 MD5sum: efe0f5b35bccb7b5f9d251a25970a0ac Description: C++, Tcl and Python example programs/scripts for VTK The Visualization Toolkit (VTK) is an object oriented, high level library that allows one to easily write C++ programs, Tcl, Python and Java scripts that do 3D visualization. . This package contains examples from the VTK source. To compile the C++ examples you will need to install the vtk-dev package as well. Some of them require the libqt4-dev package. . The Python and Tcl examples can be run with the corresponding packages (python-vtk, tcl-vtk).