Package: fsl-atlases Source: fsldata Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 36 Depends: fsl-harvard-oxford-atlases, fsl-juelich-histological-atlas, fsl-jhu-dti-whitematter-atlas, fsl-mni-structural-atlas, fsl-talairach-daemon-atlas, fsl-oxford-thalamic-connectivity-atlas, fsl-bangor-cerebellar-atlas, fsl-mni152-templates, fsl-oxford-striatal-atlas Replaces: fsl-data Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-atlases_5.0.0-1_all.deb Size: 3884 SHA256: bc1899b45038de7313acf91aabc524e297adeb426ab0243d78ded9166d2ef476 SHA1: 75eec66da51739f70c99dcf91b26a9a593f2f85d MD5sum: 0759c5c3ff9f6f6c2c2116185565b563 Description: FSL's MNI152 standard space stereotaxic brain atlases This meta-package installs all stereotaxic atlases that are shipped with FSL. Package: fsl-bangor-cerebellar-atlas Source: fsldata Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1896 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-bangor-cerebellar-atlas_5.0.0-1_all.deb Size: 1326654 SHA256: 142ee5e8b5d6bd3f59543cf20f4244151cf09f19ebbbe160b156132cbf304aa7 SHA1: f2ad9aa619cf95fafdf1998708a19110578c870e MD5sum: 88019213fe24a84dadf93fdf413968c8 Description: probabilistic atlas of the human cerebellum This is a probabilistic atlas of the cerebellar lobules in the anatomical space defined by the MNI152 template. Lobules were masked separately on T1-weighted MRI scans (1 mm isotropic resolution) of 20 healthy young participants (10 male, 10 female, average age 23.7 yrs). These cerebella were then aligned to the standard or non-linear version of the whole-brain MNI152 template using a number of commonly used normalization algorithms, or to a previously published cerebellum-only template (Diedrichsen, J., 2006. A spatially unbiased atlas template of the human cerebellum. NeuroImage 33, 127-138). . This package is part of FSL. Package: fsl-feeds Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 282664 Depends: fsl (>= 4.1), dc, tcl8.4 | tclsh, debianutils (>= 1.7), fsl-atlases (>= 4.1) Recommends: fsl-first-data (>= 4.1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsl-feeds/fsl-feeds_5.0.0-1_all.deb Size: 283574568 SHA256: 01d4e5427cf87a74090f5868d8af28f7804b8b27676f0164a4844c9d722e49b5 SHA1: cc180d3529296fa8d49b92267b67aef00bc08feb MD5sum: 04ff6835a6d2a7bb90bb9b4b3b37f97f Description: FSL Evaluation and Example Data Suite FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the 'fsl-selftest' tool, that can be used to test whether FSL is working properly. Additionally the included example data might be useful when doing the first steps with FSL. . The datasets include both example input and example output data. Package: fsl-first-data Source: fsldata Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1134048 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-first-data_5.0.0-1_all.deb Size: 1076156844 SHA256: c99f9375a27d6dc47f4883706a4164f8b1c4300c9ef892cbfb442d38de6cd91d SHA1: 1253f17c7609b6c14ec2d1da6e9845fd995080b9 MD5sum: 23cfefe1bce74f426d9194d2ffd5cfcf Description: model data for FIRST subcortical brain segmentation This package is part of FSL. Package: fsl-harvard-oxford-atlases Source: fsldata Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 8500 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-harvard-oxford-atlases_5.0.0-1_all.deb Size: 7890332 SHA256: 530deb4b0f2ad9be0533b67b57de9ba6c49fa85fcb72114fee56d1647eb92e34 SHA1: d31ad026fb1eda9a316dfe8acaffd317f569b960 MD5sum: e5a4a7304dea96de7d480d6c464d028c Description: probabilistic atlas of human cortical and subcortical brain areas Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis. . T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label. . This package is part of FSL. Package: fsl-jhu-dti-whitematter-atlas Source: fsldata Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 13708 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-jhu-dti-whitematter-atlas_5.0.0-1_all.deb Size: 13666554 SHA256: 30bef3b3d22284db54828f6c9ea446d129880bfa4c6f4f4944fecd057f5fe5ff SHA1: 18f1264c0b4c70f71740e8b91b2e95e3f297b98a MD5sum: 626019d86dbe07555e69a6a804c0888c Description: human brain white-matter atlas There are two white-matter atlases, both kindly provided by Dr. Susumu Mori, Laboratory of Brain Anatomical MRI, Johns Hopkins University. . In the ICBM-DTI-81 white-matter labels atlas, 50 white matter tract labels were created by hand segmentation of a standard-space average of diffusion MRI tensor maps from 81 subjects; mean age 39 (18:59), M:42, F: 39. The diffusion data was kindly provided by the ICBM DTI workgroup. . In the JHU white-matter tractography atlas, 20 structures were identified probabilistically by averaging the results of running deterministic tractography on 28 normal subjects (mean age 29, M:17, F:11). . This package is part of FSL. Package: fsl-juelich-histological-atlas Source: fsldata Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 4740 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-juelich-histological-atlas_5.0.0-1_all.deb Size: 3747578 SHA256: 1b3e6c5586c0f4b0402431fa3eb21c70b886b2a58d2fe5ee6d337b4c3b819037 SHA1: 50ba181c70482901d4f6260d903d78d7c7c24ae4 MD5sum: f680e008612386df78f1be9b0c8fae30 Description: brain atlas based on cyto- and myelo-architectonic segmentations A probabilistic atlas created by averaging multi-subject post-mortem cyto- and myelo-architectonic segmentations, performed by the team of Profs Zilles and Amunts at the Research Center Jülich and kindly provided by Simon Eickhoff. . The atlas contains 32 grey matter structures and 10 white matter structures. This is the same data as used in Eickhoff's Anatomy Toolbox v1.5. The atlas is based on the microscopic and quantitative histological examination of ten human post-mortem brains. The histological volumes of these brains were 3D reconstructed and spatially normalised into the space of the MNI single subject template to create a probabilistic map of each area. For the FSL version of this atlas, these probabilistic maps were then linearly transformed into MNI152 space. . This package is part of FSL. Package: fsl-mni-structural-atlas Source: fsldata Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 2776 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni-structural-atlas_5.0.0-1_all.deb Size: 2625062 SHA256: 02ae4c81b8ae98e72cb1d28c1610b3c1e45203bbd8b6d56827a589489386feac SHA1: d3a2ec541e6c71f163e0aed306cdc51af25faecc MD5sum: 9ca5f67113b7cf47e2d47315bdcac8aa Description: hand-segmented single-subject human brain atlas 9 anatomical structural regions, kindly provided by Jack Lancaster at the Research Imaging Center, UTHSCSA, Texas (originally from the McConnell Brain Imaging Centre, MNI). . A single subject's structural image was hand segmented, and the labels were then propagated to more than 50 subjects' structural images using nonlinear registration. Each resulting labelled brain was then transformed into MNI152 space using affine registration, before averaging segmentations across subjects to produce the final probability images. . This package is part of FSL. Package: fsl-mni152-templates Source: fsldata Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 56788 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni152-templates_5.0.0-1_all.deb Size: 54926064 SHA256: 0ce99ad9acb2d801d349de5c2510c8910a0797d1298ce5b64c386ca808b891e8 SHA1: 7ec5a6803e9c66bee420dac3132743d0e028852a MD5sum: bb0c9b4b5bd1e947fb247e86d3574d7e Description: MNI152 stereotaxic brain templates for FSL This package is part of FSL. Package: fsl-oxford-striatal-atlas Source: fsldata Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 980 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-striatal-atlas_5.0.0-1_all.deb Size: 309506 SHA256: 67c3302b84c0a479f6e029f92e174d4c4fb5f8831cdbee058a278268ceaad0d8 SHA1: fcfcddb3481ecc66e28b2e912696dce78c000efb MD5sum: 530a01a094cf79833bb8c4abda2023c8 Description: probabilistic atlas of the human brain's sub-striatal regions This package provide both a structural and a connectivity atlas of the human striatum. For the latter, sub-striatal regions are segmented according to their white-matter connectivity to cortical areas. This connectivity atlas reports anatomical connection from points in the striatum to each of 7 cortical zones obtained using probabilistic diffusion tractography in multiple subjects. . In the structural atlas sub-striatal regions are segmented according to the anatomical structure. Striatum is divided into caudate, putamen and ventral striatum according to the guidelines described by Tziortzi et al., NeuroImage 54: 264-77. The sub-regions were manually delineated on the non-linear MNI152 template. . This package is part of FSL. Package: fsl-oxford-thalamic-connectivity-atlas Source: fsldata Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 372 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-thalamic-connectivity-atlas_5.0.0-1_all.deb Size: 221618 SHA256: 7daed43b124edc84fd7daf69baa517e371b8aa600eabccc7820f5183a67f9c97 SHA1: 59756effada347db65c8754ac99e6a1b8b53b3c7 MD5sum: 0596107cd0db0933506c1df3c74b4434 Description: probabilistic brain atlas of thalamic white-matter connectivity A probabilistic atlas of 7 sub-thalamic regions, segmented according to their white-matter connectivity to cortical areas, kindly provided by Heidi Johansen-Berg and Timothy Behrens, FMRIB. . This connectivity atlas reports probability of anatomical connection from points in the thalamus to each of 7 cortical zones. These probabilities are calculated using probabilistic diffusion tractography in multiple subjects. . This package is part of FSL. Package: fsl-possum-data Source: fsldata Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 41372 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-possum-data_5.0.0-1_all.deb Size: 41620964 SHA256: c1923d4eadb168ad2377bd5fc4ad2ee03a12e5eef9cda566b4e9871e3de97236 SHA1: d8445a09da6346aa2192d7232aac8e50e3a0f44a MD5sum: 2477f21e34a872cab1c4df70b1a47fe7 Description: sequence templates for the POSSUM MRI-simulator This package is part of FSL. Package: fsl-talairach-daemon-atlas Source: fsldata Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 676 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-talairach-daemon-atlas_5.0.0-1_all.deb Size: 458820 SHA256: 91e9e30fcbd4e644fbc3b4e10bd3c150853ee70069fa6c75711acc322f90c8ea SHA1: d801df50b7462adc084f91eba0a0948a33de4780 MD5sum: 91ffafb506a63ca84c2e1b189b3e9cf2 Description: structural anatomy labels of the Talairach atlas A conversion of the original Talairach structural labellings, kindly provided by Jack Lancaster and Diana Tordesillas Gutiérrez at the Research Imaging Center, UTHSCSA, Texas. . This is a digitised version of the original (coarsely sliced) Talairach atlas (Lancaster 2000) after the application of a correcting affine transform (Lancaster 2007) to register it into MNI152 space. . This package is part of FSL.