Package: fsl-atlases Source: fsldata Version: 5.0.0-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 6 Depends: fsl-harvard-oxford-atlases, fsl-juelich-histological-atlas, fsl-jhu-dti-whitematter-atlas, fsl-mni-structural-atlas, fsl-talairach-daemon-atlas, fsl-oxford-thalamic-connectivity-atlas, fsl-bangor-cerebellar-atlas, fsl-mni152-templates, fsl-oxford-striatal-atlas Replaces: fsl-data Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-atlases_5.0.0-2_all.deb Size: 4000 SHA256: d9640c4847010eaf4cd6f0240f3c42ed9aef1482bf20c48fa02becd5d5fc0040 SHA1: fe1fca66d415a8272e446ef2f6201fd1bb6638b2 MD5sum: d561fba36cfe93f04d438b9e5ae6bdfa Description: FSL's MNI152 standard space stereotaxic brain atlases This meta-package installs all stereotaxic atlases that are shipped with FSL. Package: fsl-bangor-cerebellar-atlas Source: fsldata Version: 5.0.0-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1788 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-bangor-cerebellar-atlas_5.0.0-2_all.deb Size: 1326528 SHA256: 556b84d314ac82c6f34a9ef60429bb6b383f0baaa4b985f728069bd9690dac27 SHA1: 4af258b27c64f1ff52d997655cd3253fe42e5701 MD5sum: 25fab4ded6e8318eadde6e6aa06a44ff Description: probabilistic atlas of the human cerebellum This is a probabilistic atlas of the cerebellar lobules in the anatomical space defined by the MNI152 template. Lobules were masked separately on T1-weighted MRI scans (1 mm isotropic resolution) of 20 healthy young participants (10 male, 10 female, average age 23.7 yrs). These cerebella were then aligned to the standard or non-linear version of the whole-brain MNI152 template using a number of commonly used normalization algorithms, or to a previously published cerebellum-only template (Diedrichsen, J., 2006. A spatially unbiased atlas template of the human cerebellum. NeuroImage 33, 127-138). . This package is part of FSL. Package: fsl-feeds Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 282664 Depends: fsl (>= 4.1), dc, tcl8.4 | tclsh, debianutils (>= 1.7), fsl-atlases (>= 4.1) Recommends: fsl-first-data (>= 4.1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsl-feeds/fsl-feeds_5.0.0-1_all.deb Size: 283574568 SHA256: 01d4e5427cf87a74090f5868d8af28f7804b8b27676f0164a4844c9d722e49b5 SHA1: cc180d3529296fa8d49b92267b67aef00bc08feb MD5sum: 04ff6835a6d2a7bb90bb9b4b3b37f97f Description: FSL Evaluation and Example Data Suite FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the 'fsl-selftest' tool, that can be used to test whether FSL is working properly. Additionally the included example data might be useful when doing the first steps with FSL. . The datasets include both example input and example output data. Package: fsl-first-data Source: fsldata Version: 5.0.0-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1132666 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-first-data_5.0.0-2_all.deb Size: 1076157586 SHA256: f621464d6c9981d7556259140c8c6820a2ddbfa927897bb46abfabf4690e0f67 SHA1: 73ac919730fd76ff01afbedfbd5cded3c1a96d2f MD5sum: d8fbc9c3fde24c620805eedcbe826de8 Description: model data for FIRST subcortical brain segmentation This package is part of FSL. Package: fsl-harvard-oxford-atlases Source: fsldata Version: 5.0.0-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 8347 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-harvard-oxford-atlases_5.0.0-2_all.deb Size: 7890126 SHA256: 85a75f3950a96bad58cbf2cc209a9a7d51548240dd9469eaf44c2033cbb8434c SHA1: 66f0f29dcf197ab3b97d01fa6fde48f8ab251185 MD5sum: 3f545c011407e02715d6026cdaf3a4dc Description: probabilistic atlas of human cortical and subcortical brain areas Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis. . T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label. . This package is part of FSL. Package: fsl-jhu-dti-whitematter-atlas Source: fsldata Version: 5.0.0-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 13569 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-jhu-dti-whitematter-atlas_5.0.0-2_all.deb Size: 13666342 SHA256: d86dd765aeec32686c55d9c47072b02622a14b09d83c0b774e51329d9b38f6b8 SHA1: 29b4cf3e0a238f25e07048963d2b69376716e697 MD5sum: 9889043e561a19e70b8ab8af22d835eb Description: human brain white-matter atlas There are two white-matter atlases, both kindly provided by Dr. Susumu Mori, Laboratory of Brain Anatomical MRI, Johns Hopkins University. . In the ICBM-DTI-81 white-matter labels atlas, 50 white matter tract labels were created by hand segmentation of a standard-space average of diffusion MRI tensor maps from 81 subjects; mean age 39 (18:59), M:42, F: 39. The diffusion data was kindly provided by the ICBM DTI workgroup. . In the JHU white-matter tractography atlas, 20 structures were identified probabilistically by averaging the results of running deterministic tractography on 28 normal subjects (mean age 29, M:17, F:11). . This package is part of FSL. Package: fsl-juelich-histological-atlas Source: fsldata Version: 5.0.0-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 4650 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-juelich-histological-atlas_5.0.0-2_all.deb Size: 3747566 SHA256: 4956bbbf30d835195321608d65336895cbb37404b66d17a7b8d350b4635b9e15 SHA1: 7c2153ef8812db5eec18d890b066d0b2e8df8032 MD5sum: c1bab755b8ab2e65f318a52c7c3c50ce Description: brain atlas based on cyto- and myelo-architectonic segmentations A probabilistic atlas created by averaging multi-subject post-mortem cyto- and myelo-architectonic segmentations, performed by the team of Profs Zilles and Amunts at the Research Center Jülich and kindly provided by Simon Eickhoff. . The atlas contains 32 grey matter structures and 10 white matter structures. This is the same data as used in Eickhoff's Anatomy Toolbox v1.5. The atlas is based on the microscopic and quantitative histological examination of ten human post-mortem brains. The histological volumes of these brains were 3D reconstructed and spatially normalised into the space of the MNI single subject template to create a probabilistic map of each area. For the FSL version of this atlas, these probabilistic maps were then linearly transformed into MNI152 space. . This package is part of FSL. Package: fsl-mni-structural-atlas Source: fsldata Version: 5.0.0-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 2686 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni-structural-atlas_5.0.0-2_all.deb Size: 2625028 SHA256: e1ceca019b6b76db41d69e45a3e68a0f5deb07f1fa38a9d6d55175b5d6a7a191 SHA1: d9429723dbfd9198c32ec5704a60b4fbefafbe93 MD5sum: 2de82838f1c0d13835cd545ebdaff178 Description: hand-segmented single-subject human brain atlas 9 anatomical structural regions, kindly provided by Jack Lancaster at the Research Imaging Center, UTHSCSA, Texas (originally from the McConnell Brain Imaging Centre, MNI). . A single subject's structural image was hand segmented, and the labels were then propagated to more than 50 subjects' structural images using nonlinear registration. Each resulting labelled brain was then transformed into MNI152 space using affine registration, before averaging segmentations across subjects to produce the final probability images. . This package is part of FSL. Package: fsl-mni152-templates Source: fsldata Version: 5.0.0-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 56533 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni152-templates_5.0.0-2_all.deb Size: 54925084 SHA256: 3a3496f01e82ee92cf512814198c4844e70c93a9a4281f9462f672ab224fbff8 SHA1: c368999f888355d6db6da56547cc77e7df8d6012 MD5sum: 520c1cf86b411e7e8c8b3fcbd37d7275 Description: MNI152 stereotaxic brain templates for FSL This package is part of FSL. Package: fsl-oxford-striatal-atlas Source: fsldata Version: 5.0.0-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 885 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-striatal-atlas_5.0.0-2_all.deb Size: 309420 SHA256: 6978ca1e48bd83ee333131c5206a6a1c79e058f04c5138d37eacbe2327422f49 SHA1: 3d212439c642b3447f44f1bde7a2b46dae2a9b5d MD5sum: a9b10e303f8d5cf82dc97e1ac4efbfa7 Description: probabilistic atlas of the human brain's sub-striatal regions This package provide both a structural and a connectivity atlas of the human striatum. For the latter, sub-striatal regions are segmented according to their white-matter connectivity to cortical areas. This connectivity atlas reports anatomical connection from points in the striatum to each of 7 cortical zones obtained using probabilistic diffusion tractography in multiple subjects. . In the structural atlas sub-striatal regions are segmented according to the anatomical structure. Striatum is divided into caudate, putamen and ventral striatum according to the guidelines described by Tziortzi et al., NeuroImage 54: 264-77. The sub-regions were manually delineated on the non-linear MNI152 template. . This package is part of FSL. Package: fsl-oxford-thalamic-connectivity-atlas Source: fsldata Version: 5.0.0-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 299 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-thalamic-connectivity-atlas_5.0.0-2_all.deb Size: 221436 SHA256: 3dcc57190e541ba4c306eaf0a2a990e58ee0eb7b17073da8f5d4c43742e22e13 SHA1: 8ee5719591603265d9ba983c99111cc978f2474b MD5sum: b8464b3d9db4f3e2a3d401dbc36e5312 Description: probabilistic brain atlas of thalamic white-matter connectivity A probabilistic atlas of 7 sub-thalamic regions, segmented according to their white-matter connectivity to cortical areas, kindly provided by Heidi Johansen-Berg and Timothy Behrens, FMRIB. . This connectivity atlas reports probability of anatomical connection from points in the thalamus to each of 7 cortical zones. These probabilities are calculated using probabilistic diffusion tractography in multiple subjects. . This package is part of FSL. Package: fsl-possum-data Source: fsldata Version: 5.0.0-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 41235 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-possum-data_5.0.0-2_all.deb Size: 41620668 SHA256: ae316b44e23965fd0f1dc8859970f298cefb8e0098c2d9e8af2d97d597e4d7f6 SHA1: 5feced053d884ee23fda5e0fbc19b8ba9506f9b5 MD5sum: 4de1400ac3a34f0655957ea61e4b2d57 Description: sequence templates for the POSSUM MRI-simulator This package is part of FSL. Package: fsl-talairach-daemon-atlas Source: fsldata Version: 5.0.0-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 604 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-talairach-daemon-atlas_5.0.0-2_all.deb Size: 458938 SHA256: c7009453c3c31589bea6a74cfd3f11448ff84ceb1c8d8678a237874b2f3cd140 SHA1: 9654c34644f208c5760b9254fe552b1dfcddd41c MD5sum: 0f3d5dabbab6373fa1a4944bcd7d9377 Description: structural anatomy labels of the Talairach atlas A conversion of the original Talairach structural labellings, kindly provided by Jack Lancaster and Diana Tordesillas Gutiérrez at the Research Imaging Center, UTHSCSA, Texas. . This is a digitised version of the original (coarsely sliced) Talairach atlas (Lancaster 2000) after the application of a correcting affine transform (Lancaster 2007) to register it into MNI152 space. . This package is part of FSL.