Package: fsl-atlases Source: fsldata Version: 5.0.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 36 Depends: fsl-harvard-oxford-atlases, fsl-juelich-histological-atlas, fsl-jhu-dti-whitematter-atlas, fsl-mni-structural-atlas, fsl-talairach-daemon-atlas, fsl-oxford-thalamic-connectivity-atlas, fsl-bangor-cerebellar-atlas, fsl-mni152-templates, fsl-oxford-striatal-atlas, fsl-subthalamic-nucleus-atlases Replaces: fsl-data Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-atlases_5.0.2-1_all.deb Size: 4106 SHA256: 80a89dfb4e1f56d36449833b2ab91b793e71bb6f154844c669cf262a528d574f SHA1: 622898290c1aae3ba47d9d6ba03d3bd949a8f5fe MD5sum: 022f684becebab0c65bb17c9e747cb45 Description: FSL's MNI152 standard space stereotaxic brain atlases This meta-package installs all stereotaxic atlases that are shipped with FSL. Package: fsl-bangor-cerebellar-atlas Source: fsldata Version: 5.0.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1896 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-bangor-cerebellar-atlas_5.0.2-1_all.deb Size: 1326850 SHA256: 4c65e89b9d52193a0fcc0f0356993babb655ecb47d5caa4bfe469c446553a102 SHA1: 0289b8e99213c6fca2ce0154e638b7b00e6870a7 MD5sum: cb695f921f582d99ddfcccb8273ed85f Description: probabilistic atlas of the human cerebellum This is a probabilistic atlas of the cerebellar lobules in the anatomical space defined by the MNI152 template. Lobules were masked separately on T1-weighted MRI scans (1 mm isotropic resolution) of 20 healthy young participants (10 male, 10 female, average age 23.7 yrs). These cerebella were then aligned to the standard or non-linear version of the whole-brain MNI152 template using a number of commonly used normalization algorithms, or to a previously published cerebellum-only template (Diedrichsen, J., 2006. A spatially unbiased atlas template of the human cerebellum. NeuroImage 33, 127-138). . This package is part of FSL. Package: fsl-feeds Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 282664 Depends: fsl (>= 4.1), dc, tcl8.4 | tclsh, debianutils (>= 1.7), fsl-atlases (>= 4.1) Recommends: fsl-first-data (>= 4.1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsl-feeds/fsl-feeds_5.0.0-1_all.deb Size: 283574568 SHA256: 01d4e5427cf87a74090f5868d8af28f7804b8b27676f0164a4844c9d722e49b5 SHA1: cc180d3529296fa8d49b92267b67aef00bc08feb MD5sum: 04ff6835a6d2a7bb90bb9b4b3b37f97f Description: FSL Evaluation and Example Data Suite FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the 'fsl-selftest' tool, that can be used to test whether FSL is working properly. Additionally the included example data might be useful when doing the first steps with FSL. . The datasets include both example input and example output data. Package: fsl-first-data Source: fsldata Version: 5.0.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1134048 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-first-data_5.0.2-1_all.deb Size: 1076156216 SHA256: 31ec2da4350a19202b2a55a0d2286e6587ed5ccfadb3f72f14c66a137c34a3a5 SHA1: faa8c88a80117005dd9833d3faae0a9c1e588a76 MD5sum: ce181aa179c13f4f9f644db219fd09aa Description: model data for FIRST subcortical brain segmentation This package is part of FSL. Package: fsl-harvard-oxford-atlases Source: fsldata Version: 5.0.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 8500 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-harvard-oxford-atlases_5.0.2-1_all.deb Size: 7890526 SHA256: 7cca60b7ab09cf85c83526340f99cfd969d1eafbf059b20407bba2870b22630b SHA1: 0474f206f383f1b459ca7df0a4a7aa685f76a105 MD5sum: f974f2200911cb7c65ce596154860570 Description: probabilistic atlas of human cortical and subcortical brain areas Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis. . T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label. . This package is part of FSL. Package: fsl-jhu-dti-whitematter-atlas Source: fsldata Version: 5.0.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 13708 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-jhu-dti-whitematter-atlas_5.0.2-1_all.deb Size: 13666770 SHA256: c867e3a383f0bad81c6b4092d3173f12de157bcd16a089b0b1ed743b715d88a1 SHA1: e3fe6002082de6f7444c363b07b2bb8a6a5d6298 MD5sum: 417ac139e3b85cfcca1b8e3a0205f9ee Description: human brain white-matter atlas There are two white-matter atlases, both kindly provided by Dr. Susumu Mori, Laboratory of Brain Anatomical MRI, Johns Hopkins University. . In the ICBM-DTI-81 white-matter labels atlas, 50 white matter tract labels were created by hand segmentation of a standard-space average of diffusion MRI tensor maps from 81 subjects; mean age 39 (18:59), M:42, F: 39. The diffusion data was kindly provided by the ICBM DTI workgroup. . In the JHU white-matter tractography atlas, 20 structures were identified probabilistically by averaging the results of running deterministic tractography on 28 normal subjects (mean age 29, M:17, F:11). . This package is part of FSL. Package: fsl-juelich-histological-atlas Source: fsldata Version: 5.0.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 4740 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-juelich-histological-atlas_5.0.2-1_all.deb Size: 3747774 SHA256: 9085176461294002841f35bb4d286fdab31cc93d21b3c6411067e40c39c33ed5 SHA1: 2bc8d6872a1fa66d2c20e8b721c5c63abd88ed10 MD5sum: 29d8476979f8957b5230a4d0d298ba14 Description: brain atlas based on cyto- and myelo-architectonic segmentations A probabilistic atlas created by averaging multi-subject post-mortem cyto- and myelo-architectonic segmentations, performed by the team of Profs Zilles and Amunts at the Research Center Jülich and kindly provided by Simon Eickhoff. . The atlas contains 32 grey matter structures and 10 white matter structures. This is the same data as used in Eickhoff's Anatomy Toolbox v1.5. The atlas is based on the microscopic and quantitative histological examination of ten human post-mortem brains. The histological volumes of these brains were 3D reconstructed and spatially normalised into the space of the MNI single subject template to create a probabilistic map of each area. For the FSL version of this atlas, these probabilistic maps were then linearly transformed into MNI152 space. . This package is part of FSL. Package: fsl-mni-structural-atlas Source: fsldata Version: 5.0.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 2776 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni-structural-atlas_5.0.2-1_all.deb Size: 2625226 SHA256: ddc952cf7181d613b91ac32a88a660818a138b45ce71fa576577832cce980694 SHA1: e45b529589716daec6cc68434ab27d976f5e00ba MD5sum: af0fb27224f9e6c96ff1abfd2f865443 Description: hand-segmented single-subject human brain atlas 9 anatomical structural regions, kindly provided by Jack Lancaster at the Research Imaging Center, UTHSCSA, Texas (originally from the McConnell Brain Imaging Centre, MNI). . A single subject's structural image was hand segmented, and the labels were then propagated to more than 50 subjects' structural images using nonlinear registration. Each resulting labelled brain was then transformed into MNI152 space using affine registration, before averaging segmentations across subjects to produce the final probability images. . This package is part of FSL. Package: fsl-mni152-templates Source: fsldata Version: 5.0.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 56788 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni152-templates_5.0.2-1_all.deb Size: 54926278 SHA256: e8540c64a3a79eb4912ccadd92b025f87b4d7b7bddcb362526cc9d75d2d849bc SHA1: fd0b87f4eff680efc9bb589c17193a0b33d6085e MD5sum: c6ddf5b2e16671c259b3a98bf1ba5496 Description: MNI152 stereotaxic brain templates for FSL This package is part of FSL. Package: fsl-oxford-striatal-atlas Source: fsldata Version: 5.0.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 988 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-striatal-atlas_5.0.2-1_all.deb Size: 309716 SHA256: e4eb3bb9a7be831ed1b1eafcce70a9aa44db86501bd6cea2abe9e5aa8a089815 SHA1: bf95e6cbdb8fe015d237f8c1c7ef865d860f3fe2 MD5sum: 60a4049f99cb56df0060460ecf6b3d60 Description: probabilistic atlas of the human brain's sub-striatal regions This package provide both a structural and a connectivity atlas of the human striatum. For the latter, sub-striatal regions are segmented according to their white-matter connectivity to cortical areas. This connectivity atlas reports anatomical connection from points in the striatum to each of 7 cortical zones obtained using probabilistic diffusion tractography in multiple subjects. . In the structural atlas sub-striatal regions are segmented according to the anatomical structure. Striatum is divided into caudate, putamen and ventral striatum according to the guidelines described by Tziortzi et al., NeuroImage 54: 264-77. The sub-regions were manually delineated on the non-linear MNI152 template. . This package is part of FSL. Package: fsl-oxford-thalamic-connectivity-atlas Source: fsldata Version: 5.0.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 372 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-thalamic-connectivity-atlas_5.0.2-1_all.deb Size: 221822 SHA256: 191c63f50b5a54b0b3920257acdf9f81d26de444317eb54c9be2e1dcb9670ce0 SHA1: 3bc101d5ec211a78a8ad200bbf5ba805959cd193 MD5sum: 9b47b8f63c6004a65e9e0c4494919106 Description: probabilistic brain atlas of thalamic white-matter connectivity A probabilistic atlas of 7 sub-thalamic regions, segmented according to their white-matter connectivity to cortical areas, kindly provided by Heidi Johansen-Berg and Timothy Behrens, FMRIB. . This connectivity atlas reports probability of anatomical connection from points in the thalamus to each of 7 cortical zones. These probabilities are calculated using probabilistic diffusion tractography in multiple subjects. . This package is part of FSL. Package: fsl-possum-data Source: fsldata Version: 5.0.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 41372 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-possum-data_5.0.2-1_all.deb Size: 41621266 SHA256: f7986d72a697685d444729508627204b450a52564ba114c40322cd99c8238a73 SHA1: 3bef313c3bf144000960e6497f393ffc4cf19db4 MD5sum: f1d485bb28e9f7172c8e204701ca07d2 Description: sequence templates for the POSSUM MRI-simulator This package is part of FSL. Package: fsl-subthalamic-nucleus-atlas Source: fsldata Version: 5.0.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1200 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-subthalamic-nucleus-atlas_5.0.2-1_all.deb Size: 29356 SHA256: fbc035d40ebe10b262995067bbaa021ae5672f5140fd4ccd1123029d461c4aad SHA1: 882ea91de76f25e690406758acb0dfa5b704d321 MD5sum: 5024dfabcfe60d4d7886de5805bfd157 Description: probabilistic subthalamic nucleus atlas This atlas takes advantage of the ultra-high resolution possible in 7T MRI to provide unprecedented levels of detail on structures of the basal ganglia in vivo. The atlas includes (so far) probability maps of the right and left Subthalamic Nucleus (STN) using T2*-imaging. For now it has been created on 13 young healthy participants (6 female) with a mean age of 24.38 (range: 22-28, standard deviation: 2.36). More details are available in . B.U. Forstmann, Keuken, M. C., Jahfari, S., Bazin, P.-L., Neumann, J., Schaefer, A., Anwander, A., & Turner, R. (2012). Cortico-subthalamic white matter tract strength predict interindividual efficacy in stopping a motor response. NeuroImage, 60, 370-375. . This package is part of FSL. Package: fsl-talairach-daemon-atlas Source: fsldata Version: 5.0.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 676 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-talairach-daemon-atlas_5.0.2-1_all.deb Size: 458984 SHA256: cc03b0f2f1e4bb16e0b61f065e859a69ae25db9a022cdf91d527e8c36fdfd28b SHA1: 8b49fec95a9082524123eda050ece34638acf24b MD5sum: bd6b7fc37f3f522b2f87fc1eda458ab7 Description: structural anatomy labels of the Talairach atlas A conversion of the original Talairach structural labellings, kindly provided by Jack Lancaster and Diana Tordesillas Gutiérrez at the Research Imaging Center, UTHSCSA, Texas. . This is a digitised version of the original (coarsely sliced) Talairach atlas (Lancaster 2000) after the application of a correcting affine transform (Lancaster 2007) to register it into MNI152 space. . This package is part of FSL.