Package: fsl-atlases Source: fsldata Version: 5.0.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 36 Depends: fsl-harvard-oxford-atlases, fsl-juelich-histological-atlas, fsl-jhu-dti-whitematter-atlas, fsl-mni-structural-atlas, fsl-talairach-daemon-atlas, fsl-oxford-thalamic-connectivity-atlas, fsl-bangor-cerebellar-atlas, fsl-mni152-templates, fsl-oxford-striatal-atlas, fsl-subthalamic-nucleus-atlas Replaces: fsl-data Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-atlases_5.0.2-2_all.deb Size: 4160 SHA256: f575bc66c0cb32247e52db670989c51e749a0cc79e218884c913d2f2bdfc136c SHA1: 88e73ea99501db9529191b4e6245f65544a61b27 MD5sum: 89c0e6d4ca27b58a7179a9b41d72beb6 Description: FSL's MNI152 standard space stereotaxic brain atlases This meta-package installs all stereotaxic atlases that are shipped with FSL. Package: fsl-bangor-cerebellar-atlas Source: fsldata Version: 5.0.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1896 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-bangor-cerebellar-atlas_5.0.2-2_all.deb Size: 1326888 SHA256: d94575cbf281d711e650b5e35bb540ae54723c0e490a7699b7d178d4ccb40971 SHA1: aa57ed4308d675c222d6e34a3766c4b86c8feb45 MD5sum: 9d6f6fe13d644562bc1c9eb09e5cb35e Description: probabilistic atlas of the human cerebellum This is a probabilistic atlas of the cerebellar lobules in the anatomical space defined by the MNI152 template. Lobules were masked separately on T1-weighted MRI scans (1 mm isotropic resolution) of 20 healthy young participants (10 male, 10 female, average age 23.7 yrs). These cerebella were then aligned to the standard or non-linear version of the whole-brain MNI152 template using a number of commonly used normalization algorithms, or to a previously published cerebellum-only template (Diedrichsen, J., 2006. A spatially unbiased atlas template of the human cerebellum. NeuroImage 33, 127-138). . This package is part of FSL. Package: fsl-feeds Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 282664 Depends: fsl (>= 4.1), dc, tcl8.4 | tclsh, debianutils (>= 1.7), fsl-atlases (>= 4.1) Recommends: fsl-first-data (>= 4.1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsl-feeds/fsl-feeds_5.0.0-1_all.deb Size: 283574568 SHA256: 01d4e5427cf87a74090f5868d8af28f7804b8b27676f0164a4844c9d722e49b5 SHA1: cc180d3529296fa8d49b92267b67aef00bc08feb MD5sum: 04ff6835a6d2a7bb90bb9b4b3b37f97f Description: FSL Evaluation and Example Data Suite FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the 'fsl-selftest' tool, that can be used to test whether FSL is working properly. Additionally the included example data might be useful when doing the first steps with FSL. . The datasets include both example input and example output data. Package: fsl-first-data Source: fsldata Version: 5.0.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1134048 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-first-data_5.0.2-2_all.deb Size: 1076156504 SHA256: abb855d9289a303fbcbc79fbfab698837a678d36e71b8f9d2e9e21ba25944fc7 SHA1: e9c814a30c2fa74df0b5b7e928de0e73b778724f MD5sum: 1ecd919e973787ca667bebe551ebe145 Description: model data for FIRST subcortical brain segmentation This package is part of FSL. Package: fsl-harvard-oxford-atlases Source: fsldata Version: 5.0.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 8500 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-harvard-oxford-atlases_5.0.2-2_all.deb Size: 7890562 SHA256: 9225e83e8cb8a75fe17f311cf42b4dcb86148672fa0d578a390f1d7ab7ab80d3 SHA1: 53472839f5c3bd03170bb42b676a2954aca86f63 MD5sum: 7af96469f81ce6c1d8736aaefc8d8e1a Description: probabilistic atlas of human cortical and subcortical brain areas Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis. . T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label. . This package is part of FSL. Package: fsl-jhu-dti-whitematter-atlas Source: fsldata Version: 5.0.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 13708 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-jhu-dti-whitematter-atlas_5.0.2-2_all.deb Size: 13666830 SHA256: b83ff8ebffc5e3229a4f7130225f28822a51a0535ca612e3af94feec3d8c2bb1 SHA1: c8dfa106e5ee6ccea588ed75de8e2370cf947c69 MD5sum: 8e08ec61f6e838131951371855a02671 Description: human brain white-matter atlas There are two white-matter atlases, both kindly provided by Dr. Susumu Mori, Laboratory of Brain Anatomical MRI, Johns Hopkins University. . In the ICBM-DTI-81 white-matter labels atlas, 50 white matter tract labels were created by hand segmentation of a standard-space average of diffusion MRI tensor maps from 81 subjects; mean age 39 (18:59), M:42, F: 39. The diffusion data was kindly provided by the ICBM DTI workgroup. . In the JHU white-matter tractography atlas, 20 structures were identified probabilistically by averaging the results of running deterministic tractography on 28 normal subjects (mean age 29, M:17, F:11). . This package is part of FSL. Package: fsl-juelich-histological-atlas Source: fsldata Version: 5.0.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 4740 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-juelich-histological-atlas_5.0.2-2_all.deb Size: 3747830 SHA256: febbf84c3a575577e0c3a508e9223f660e45fb7c23eeb92ed194e587a4a46852 SHA1: 385d8de47176944c02056550546713dbb574037c MD5sum: ddfd18764a41541ba4c45e4d773c1ace Description: brain atlas based on cyto- and myelo-architectonic segmentations A probabilistic atlas created by averaging multi-subject post-mortem cyto- and myelo-architectonic segmentations, performed by the team of Profs Zilles and Amunts at the Research Center Jülich and kindly provided by Simon Eickhoff. . The atlas contains 32 grey matter structures and 10 white matter structures. This is the same data as used in Eickhoff's Anatomy Toolbox v1.5. The atlas is based on the microscopic and quantitative histological examination of ten human post-mortem brains. The histological volumes of these brains were 3D reconstructed and spatially normalised into the space of the MNI single subject template to create a probabilistic map of each area. For the FSL version of this atlas, these probabilistic maps were then linearly transformed into MNI152 space. . This package is part of FSL. Package: fsl-mni-structural-atlas Source: fsldata Version: 5.0.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 2776 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni-structural-atlas_5.0.2-2_all.deb Size: 2625292 SHA256: feb33bd03e014fd408a1a96ecbb28cabbe9f4ddd3953d2ee38f0049497475439 SHA1: 181eb6bffb8b1d732516c553c4a8ca44097a8171 MD5sum: 82e32d2013818337cc683f1f68be7dc0 Description: hand-segmented single-subject human brain atlas 9 anatomical structural regions, kindly provided by Jack Lancaster at the Research Imaging Center, UTHSCSA, Texas (originally from the McConnell Brain Imaging Centre, MNI). . A single subject's structural image was hand segmented, and the labels were then propagated to more than 50 subjects' structural images using nonlinear registration. Each resulting labelled brain was then transformed into MNI152 space using affine registration, before averaging segmentations across subjects to produce the final probability images. . This package is part of FSL. Package: fsl-mni152-templates Source: fsldata Version: 5.0.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 56788 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni152-templates_5.0.2-2_all.deb Size: 54926372 SHA256: 6c454efe7ad3ee47cf80595febf6f97ca246e0959915b090cc4a838dcd1c301c SHA1: 0189aa397ea8b8acb6c348cdcbd7c2472b9a38ef MD5sum: c67d217c669e24b2fd3d71a889cadb6d Description: MNI152 stereotaxic brain templates for FSL This package is part of FSL. Package: fsl-oxford-striatal-atlas Source: fsldata Version: 5.0.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 988 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-striatal-atlas_5.0.2-2_all.deb Size: 309768 SHA256: 256ac991d2eed99a951137a48d08c36386d46e44fc076c1054c14285240074e2 SHA1: 7be648d5ff6c18634cb0dbfdf0323462c1bada1d MD5sum: c0562514effce53b445b5d093aa6178a Description: probabilistic atlas of the human brain's sub-striatal regions This package provide both a structural and a connectivity atlas of the human striatum. For the latter, sub-striatal regions are segmented according to their white-matter connectivity to cortical areas. This connectivity atlas reports anatomical connection from points in the striatum to each of 7 cortical zones obtained using probabilistic diffusion tractography in multiple subjects. . In the structural atlas sub-striatal regions are segmented according to the anatomical structure. Striatum is divided into caudate, putamen and ventral striatum according to the guidelines described by Tziortzi et al., NeuroImage 54: 264-77. The sub-regions were manually delineated on the non-linear MNI152 template. . This package is part of FSL. Package: fsl-oxford-thalamic-connectivity-atlas Source: fsldata Version: 5.0.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 372 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-thalamic-connectivity-atlas_5.0.2-2_all.deb Size: 221876 SHA256: 045ace7e1667a1a120d28223b5171d334363a81b0021e9228fa54aed90de086b SHA1: 86de971341ee6823c21b5d217f00a243a9675f10 MD5sum: 42947fe7d8edd56386aa390a0ff68e45 Description: probabilistic brain atlas of thalamic white-matter connectivity A probabilistic atlas of 7 sub-thalamic regions, segmented according to their white-matter connectivity to cortical areas, kindly provided by Heidi Johansen-Berg and Timothy Behrens, FMRIB. . This connectivity atlas reports probability of anatomical connection from points in the thalamus to each of 7 cortical zones. These probabilities are calculated using probabilistic diffusion tractography in multiple subjects. . This package is part of FSL. Package: fsl-possum-data Source: fsldata Version: 5.0.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 41372 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-possum-data_5.0.2-2_all.deb Size: 41621352 SHA256: 26535a66daca6b30e9d2234696433e6cd4bb4351c1dac1fd4a0fc50acee42afe SHA1: 411f634baaf886f5360d65c18298c4b61d268596 MD5sum: 5f4ba1c8b8de8310ad7c6c9977e7afb2 Description: sequence templates for the POSSUM MRI-simulator This package is part of FSL. Package: fsl-subthalamic-nucleus-atlas Source: fsldata Version: 5.0.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1200 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-subthalamic-nucleus-atlas_5.0.2-2_all.deb Size: 29402 SHA256: 32659a460e16f7455bd8fc74c0399c8919629dbe1959d099419942e56f75e575 SHA1: 13b0ff76d53a896bc6573163e7f69f7dfd88e943 MD5sum: bf5ad2c17808fd0a6532526f3f202445 Description: probabilistic subthalamic nucleus atlas This atlas takes advantage of the ultra-high resolution possible in 7T MRI to provide unprecedented levels of detail on structures of the basal ganglia in vivo. The atlas includes (so far) probability maps of the right and left Subthalamic Nucleus (STN) using T2*-imaging. For now it has been created on 13 young healthy participants (6 female) with a mean age of 24.38 (range: 22-28, standard deviation: 2.36). More details are available in . B.U. Forstmann, Keuken, M. C., Jahfari, S., Bazin, P.-L., Neumann, J., Schaefer, A., Anwander, A., & Turner, R. (2012). Cortico-subthalamic white matter tract strength predict interindividual efficacy in stopping a motor response. NeuroImage, 60, 370-375. . This package is part of FSL. Package: fsl-talairach-daemon-atlas Source: fsldata Version: 5.0.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 676 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-talairach-daemon-atlas_5.0.2-2_all.deb Size: 459024 SHA256: 9b045e14198d284c9caebd21205b46a277f8aa58ab89578eb1c098a3ddc75263 SHA1: a34dfd528c915a3e18620bcd08a27e0b07a5919e MD5sum: 9887a9a1ee11467e8ca3bb53681e6a72 Description: structural anatomy labels of the Talairach atlas A conversion of the original Talairach structural labellings, kindly provided by Jack Lancaster and Diana Tordesillas Gutiérrez at the Research Imaging Center, UTHSCSA, Texas. . This is a digitised version of the original (coarsely sliced) Talairach atlas (Lancaster 2000) after the application of a correcting affine transform (Lancaster 2007) to register it into MNI152 space. . This package is part of FSL.