Package: fsl-atlases Source: fsldata Version: 5.0.2.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 30 Depends: fsl-harvard-oxford-atlases, fsl-juelich-histological-atlas, fsl-jhu-dti-whitematter-atlas, fsl-mni-structural-atlas, fsl-talairach-daemon-atlas, fsl-oxford-thalamic-connectivity-atlas, fsl-bangor-cerebellar-atlas, fsl-mni152-templates, fsl-oxford-striatal-atlas, fsl-subthalamic-nucleus-atlas Replaces: fsl-data Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-atlases_5.0.2.2-1_all.deb Size: 4288 SHA256: 012be6a1c074033ba54289470de01c100c937e28127e9a34b8c7975f81dffcb4 SHA1: 67dab034858007b6443996c3adfdd5c443ebff06 MD5sum: ff6a97352f8aa2006fa41389e8cb381d Description: FSL's MNI152 standard space stereotaxic brain atlases This meta-package installs all stereotaxic atlases that are shipped with FSL. Package: fsl-bangor-cerebellar-atlas Source: fsldata Version: 5.0.2.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1832 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-bangor-cerebellar-atlas_5.0.2.2-1_all.deb Size: 1326872 SHA256: 8fcaecb0949d2ea422fb9305366d0540b8ba24c275675f605a1bf2d018fd79ff SHA1: 1df40bfd9deb169da890c19bb901323b802a0ef0 MD5sum: fcbb34e13b54dc87749b29fce615c7d5 Description: probabilistic atlas of the human cerebellum This is a probabilistic atlas of the cerebellar lobules in the anatomical space defined by the MNI152 template. Lobules were masked separately on T1-weighted MRI scans (1 mm isotropic resolution) of 20 healthy young participants (10 male, 10 female, average age 23.7 yrs). These cerebella were then aligned to the standard or non-linear version of the whole-brain MNI152 template using a number of commonly used normalization algorithms, or to a previously published cerebellum-only template (Diedrichsen, J., 2006. A spatially unbiased atlas template of the human cerebellum. NeuroImage 33, 127-138). . This package is part of FSL. Package: fsl-feeds Version: 5.0.0-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 282664 Depends: fsl (>= 4.1), dc, tcl8.4 | tclsh, debianutils (>= 1.7), fsl-atlases (>= 4.1) Recommends: fsl-first-data (>= 4.1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsl-feeds/fsl-feeds_5.0.0-1_all.deb Size: 283574568 SHA256: 01d4e5427cf87a74090f5868d8af28f7804b8b27676f0164a4844c9d722e49b5 SHA1: cc180d3529296fa8d49b92267b67aef00bc08feb MD5sum: 04ff6835a6d2a7bb90bb9b4b3b37f97f Description: FSL Evaluation and Example Data Suite FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the 'fsl-selftest' tool, that can be used to test whether FSL is working properly. Additionally the included example data might be useful when doing the first steps with FSL. . The datasets include both example input and example output data. Package: fsl-first-data Source: fsldata Version: 5.0.2.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1132710 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-first-data_5.0.2.2-1_all.deb Size: 1076151838 SHA256: f6b59dd2c8b6315b1e06ad0928334d7efcab1f6b7201bd91f69f56d2cfc7e406 SHA1: f3feac4b0c3ab82bbdcd4e9d90eb8e2c67118e37 MD5sum: 81186bd58f06d609adee35bab0fc8d76 Description: model data for FIRST subcortical brain segmentation This package is part of FSL. Package: fsl-harvard-oxford-atlases Source: fsldata Version: 5.0.2.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 21512 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-harvard-oxford-atlases_5.0.2.2-1_all.deb Size: 20752822 SHA256: bc225f80467435d6002109b749a1d381a9b2281142da92574d6cb141d767eca3 SHA1: 28fd67e30ab6e472c372362cff8e57af1bf45211 MD5sum: be7df383f7c00383da31ee50557ea5da Description: probabilistic atlas of human cortical and subcortical brain areas Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis. . T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label. . This package is part of FSL. Package: fsl-jhu-dti-whitematter-atlas Source: fsldata Version: 5.0.2.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 13613 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-jhu-dti-whitematter-atlas_5.0.2.2-1_all.deb Size: 13666620 SHA256: da47e921f8de1462765f03bec69b789483cb82946a00bd0422f5b8de38fe4b14 SHA1: 12888e00c427d0bed54cde61a0ca0f3a60d344ff MD5sum: 7699e1ea8d14e844197b3f6f09cd4971 Description: human brain white-matter atlas There are two white-matter atlases, both kindly provided by Dr. Susumu Mori, Laboratory of Brain Anatomical MRI, Johns Hopkins University. . In the ICBM-DTI-81 white-matter labels atlas, 50 white matter tract labels were created by hand segmentation of a standard-space average of diffusion MRI tensor maps from 81 subjects; mean age 39 (18:59), M:42, F: 39. The diffusion data was kindly provided by the ICBM DTI workgroup. . In the JHU white-matter tractography atlas, 20 structures were identified probabilistically by averaging the results of running deterministic tractography on 28 normal subjects (mean age 29, M:17, F:11). . This package is part of FSL. Package: fsl-juelich-histological-atlas Source: fsldata Version: 5.0.2.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 4693 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-juelich-histological-atlas_5.0.2.2-1_all.deb Size: 3747882 SHA256: 145cd9fcba125c194aa4616cd26561020e7a81908b1517f5fef49f647b45f7b8 SHA1: 19b6477560a79cd4339d3ae3fc9a3706e2f6b249 MD5sum: 8efc1f7871f55feb8566a636f33661e7 Description: brain atlas based on cyto- and myelo-architectonic segmentations A probabilistic atlas created by averaging multi-subject post-mortem cyto- and myelo-architectonic segmentations, performed by the team of Profs Zilles and Amunts at the Research Center Jülich and kindly provided by Simon Eickhoff. . The atlas contains 32 grey matter structures and 10 white matter structures. This is the same data as used in Eickhoff's Anatomy Toolbox v1.5. The atlas is based on the microscopic and quantitative histological examination of ten human post-mortem brains. The histological volumes of these brains were 3D reconstructed and spatially normalised into the space of the MNI single subject template to create a probabilistic map of each area. For the FSL version of this atlas, these probabilistic maps were then linearly transformed into MNI152 space. . This package is part of FSL. Package: fsl-mni-structural-atlas Source: fsldata Version: 5.0.2.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 2730 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni-structural-atlas_5.0.2.2-1_all.deb Size: 2625348 SHA256: 00f1fcdf4a1fdad5774a22270771e2392b370a8bdef63371e63032b631ee1161 SHA1: 8c27991fbacb7aff97a249c804c7ae75de8683aa MD5sum: fdaf6ecc537e8480577918b2e381a402 Description: hand-segmented single-subject human brain atlas 9 anatomical structural regions, kindly provided by Jack Lancaster at the Research Imaging Center, UTHSCSA, Texas (originally from the McConnell Brain Imaging Centre, MNI). . A single subject's structural image was hand segmented, and the labels were then propagated to more than 50 subjects' structural images using nonlinear registration. Each resulting labelled brain was then transformed into MNI152 space using affine registration, before averaging segmentations across subjects to produce the final probability images. . This package is part of FSL. Package: fsl-mni152-templates Source: fsldata Version: 5.0.2.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 56569 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni152-templates_5.0.2.2-1_all.deb Size: 54926666 SHA256: dfa064479053fcf09c86029ed51828b1cfe8617f07d43bc68ed75bcefb13723a SHA1: 2433824a952338a3bf6586eac176dec544dbd4ac MD5sum: 5ce043321c3bad96aae4e8c81d38ef22 Description: MNI152 stereotaxic brain templates for FSL This package is part of FSL. Package: fsl-oxford-striatal-atlas Source: fsldata Version: 5.0.2.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 928 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-striatal-atlas_5.0.2.2-1_all.deb Size: 309698 SHA256: 9c4fa19c27333472bfc9f17156ad038df75243e36f245b5ca0524813a083d450 SHA1: baa329adaa053a0abc2302e4e05511adaef81741 MD5sum: 193f9a0b6153417a2edf453988216932 Description: probabilistic atlas of the human brain's sub-striatal regions This package provide both a structural and a connectivity atlas of the human striatum. For the latter, sub-striatal regions are segmented according to their white-matter connectivity to cortical areas. This connectivity atlas reports anatomical connection from points in the striatum to each of 7 cortical zones obtained using probabilistic diffusion tractography in multiple subjects. . In the structural atlas sub-striatal regions are segmented according to the anatomical structure. Striatum is divided into caudate, putamen and ventral striatum according to the guidelines described by Tziortzi et al., NeuroImage 54: 264-77. The sub-regions were manually delineated on the non-linear MNI152 template. . This package is part of FSL. Package: fsl-oxford-thalamic-connectivity-atlas Source: fsldata Version: 5.0.2.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 343 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-thalamic-connectivity-atlas_5.0.2.2-1_all.deb Size: 221948 SHA256: 23b051d1b2aff0e2bd556f5f215d96e93c3196281517445675b47631a2c8e638 SHA1: 55836e9db98bf7c9009911b7405e49284544ff75 MD5sum: c465d3b131c02530a0418b2be94846cb Description: probabilistic brain atlas of thalamic white-matter connectivity A probabilistic atlas of 7 sub-thalamic regions, segmented according to their white-matter connectivity to cortical areas, kindly provided by Heidi Johansen-Berg and Timothy Behrens, FMRIB. . This connectivity atlas reports probability of anatomical connection from points in the thalamus to each of 7 cortical zones. These probabilities are calculated using probabilistic diffusion tractography in multiple subjects. . This package is part of FSL. Package: fsl-possum-data Source: fsldata Version: 5.0.2.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 41267 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-possum-data_5.0.2.2-1_all.deb Size: 41621178 SHA256: 451531895d2794fc23355eda41033c65d2db180777fb06461d380db62c9f025d SHA1: 06731bf37c516e43a70dd3976b93b5b21c51d83d MD5sum: 72236d15b3fc484382599e40f737dca9 Description: sequence templates for the POSSUM MRI-simulator This package is part of FSL. Package: fsl-subthalamic-nucleus-atlas Source: fsldata Version: 5.0.2.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1168 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-subthalamic-nucleus-atlas_5.0.2.2-1_all.deb Size: 29448 SHA256: 6a5bc1136cf43ed493e44dc1510c8767c985d41b5d38845f6d9f88005e6e2ec1 SHA1: 22082d9bedbf04791f12aea9822a11f92f87a407 MD5sum: 8672a438186c4328fa3df1d7ad8a0f79 Description: probabilistic subthalamic nucleus atlas This atlas takes advantage of the ultra-high resolution possible in 7T MRI to provide unprecedented levels of detail on structures of the basal ganglia in vivo. The atlas includes (so far) probability maps of the right and left Subthalamic Nucleus (STN) using T2*-imaging. For now it has been created on 13 young healthy participants (6 female) with a mean age of 24.38 (range: 22-28, standard deviation: 2.36). More details are available in . B.U. Forstmann, Keuken, M. C., Jahfari, S., Bazin, P.-L., Neumann, J., Schaefer, A., Anwander, A., & Turner, R. (2012). Cortico-subthalamic white matter tract strength predict interindividual efficacy in stopping a motor response. NeuroImage, 60, 370-375. . This package is part of FSL. Package: fsl-talairach-daemon-atlas Source: fsldata Version: 5.0.2.2-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 652 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-talairach-daemon-atlas_5.0.2.2-1_all.deb Size: 459172 SHA256: 497a86d4c460439b7c9dde6348f3b0a5a902900e2a64dd817f4e27d4f2861fc1 SHA1: 308a832ff1cc64dc64fba9b03ecf26aa69326d1e MD5sum: 06407b52d97c28e26e159ac3fbc835af Description: structural anatomy labels of the Talairach atlas A conversion of the original Talairach structural labellings, kindly provided by Jack Lancaster and Diana Tordesillas Gutiérrez at the Research Imaging Center, UTHSCSA, Texas. . This is a digitised version of the original (coarsely sliced) Talairach atlas (Lancaster 2000) after the application of a correcting affine transform (Lancaster 2007) to register it into MNI152 space. . This package is part of FSL.