Package: fsl Version: 5.0.4-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 52 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.4-1~nd70+1_all.deb Size: 19570 SHA256: 57c2fd280191f64e6269748eada3167b5dd818bc4b157d59d4e48c116820ca44 SHA1: 405f3c50a298d299209d5bc41f4359d861fc11ee MD5sum: 2364c800df06375bee74d0f9f85d64f6 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-core' package which replaces 'fsl'. It can safely be removed. Package: fsl-5.0 Source: fsl Version: 5.0.4-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 49 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.4-1~nd70+1_all.deb Size: 18128 SHA256: fc52ac10e7d2862ec065c10031c8a124d199780e9ee7b6f25902c842e7f7bfe8 SHA1: c3c4afa22129c41eaec06c5ceb41c88752115a72 MD5sum: dc95a77c59288be006b5dde4ce5ebdf2 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-core' package which replaces 'fsl-5.0'. It can safely be removed. Package: fsl-5.0-core Source: fsl Version: 5.0.4-1~nd70+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 36269 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk8.4 (>= 8.4.7), tcl8.4 (>= 8.4.7), bc, dc, python, libc6 (>= 2.11), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.1.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libgomp1 (>= 4.2.1), libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4) Recommends: fsl-5.0-doc (= 5.0.4-1~nd70+1), fsl-atlases, fslview Suggests: fsl-feeds, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.4-1~nd70+1_amd64.deb Size: 13865458 SHA256: 58420cd5a0b49650464dfe637a524d82fbf7e8917cdc2fe761f564ef5fe30e18 SHA1: c21f6d09da0d896a8db8367c2ce71d099f63e8e3 MD5sum: 2fba40c57f8695489c08b7615f4241cf Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-doc Source: fsl Version: 5.0.4-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 23722 Recommends: fslview-doc Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.4-1~nd70+1_all.deb Size: 18701680 SHA256: 619f56c6ac95ca0503fef9c8cc0969175483ad6e7cd2423f801fd45ff0f08f8d SHA1: 34cef35711729f6a0cb7026cd236495b4b1086c3 MD5sum: 7755dd10643d6f19da1389eda80dec97 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-core Source: fsl Version: 5.0.4-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 67 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.4-1~nd70+1_all.deb Size: 19362 SHA256: ca48a5140995b46c5fcfeba84407c5161b3a6588ac8fde07929202a3503fee8d SHA1: ea14d167b2eb29c8bea2d3efbd050f00d788c2ff MD5sum: e8f15d74c812b1d6003196356e95350e Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. Package: fsl-doc-5.0 Source: fsl Version: 5.0.4-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 49 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.4-1~nd70+1_all.deb Size: 18132 SHA256: caad7eb544e8b9d8ec4f6c0d6207069259d0660263d3ffb7d42f13fd53452ab3 SHA1: df7161bedc942a056f4dd77ac9ad7165e8b56539 MD5sum: a6cca94b51d57a376859ac6e587abdd2 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. It can safely be removed. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.10.20130114-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.10.20130114-1~nd+1), psychtoolbox-3-common (>= 3.0.10.20130114-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.10.20130114-1~nd+1_all.deb Size: 3232 SHA256: ece668e55fed5793f8ef19204013ba887c7e6d8be39c1cd5e59f3a2da2d0128f SHA1: 4ca52bb32fdc614a5f0210a37594d25872b36422 MD5sum: deabdef380c37cbd15d7ba16fd5684d6 Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.10.20130114-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 3986 Depends: neurodebian-popularity-contest, psychtoolbox-3-common (>> 3.0.10.20130114-1~nd+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.10.20130114-1~nd+1_amd64.deb Size: 1309048 SHA256: 9ce85991ded1566e2d801aa8502c94a3ce6cb27a2984c6b8ac9971a19cd5c0cf SHA1: bfcc3cab678b9bb884536170debeec04fcad5be4 MD5sum: 69a9b92ebcf0f5f0b93b884f2a357e81 Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.10.20130114-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 1297 Depends: neurodebian-popularity-contest, psychtoolbox-3-common (>> 3.0.10.20130114-1~nd+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.10.20130114-1~nd+1_amd64.deb Size: 427946 SHA256: 423965b3283dfc2efa83162c79bc8d9e490c8ae1b1b9bf973b998e1561adfe5b SHA1: 7a25f14efb6d8f2b5cf5c1d5a9f360b6493c49ce MD5sum: 03984b71a419d6b6bdc9f65f40abebd2 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3063 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd70+1_all.deb Size: 2051872 SHA256: c9772d066da29f69860ae42cbca9805917dbeb520fb1f7614c49531e47dc66d0 SHA1: 3533625c940936aec15a317cdaaa12adb9e00082 MD5sum: 9ffed1c52f0c7bba4c04bdb549847ed1 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.