Package: condor-doc Source: condor Version: 7.8.7~dfsg.1-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 6155 Depends: neurodebian-popularity-contest Homepage: http://research.cs.wisc.edu/condor Priority: extra Section: doc Filename: pool/main/c/condor/condor-doc_7.8.7~dfsg.1-1~nd12.10+1_all.deb Size: 1334038 SHA256: d1c7a7ec1393442e66988e8727ebbe6de1f93a4c9f39be2ab5ab47bb17298e4c SHA1: eed61659bbc17630729b0f78d8ca5bdac9f3e907 MD5sum: aebc5e8108bb9c9a35aeca820d307fe4 Description: distributed workload management system - documentation Like other full-featured batch systems, Condor provides a job queueing mechanism, scheduling policy, priority scheme, resource monitoring, and resource management. Users submit their serial or parallel jobs to Condor; Condor places them into a queue. It chooses when and where to run the jobs based upon a policy, carefully monitors their progress, and ultimately informs the user upon completion. . Unlike more traditional batch queueing systems, Condor can also effectively harness wasted CPU power from otherwise idle desktop workstations. Condor does not require a shared file system across machines - if no shared file system is available, Condor can transfer the job's data files on behalf of the user. . This package provides Condor's documentation in HTML and PDF format, as well as configuration and other examples. Package: eeglab11-sampledata Source: eeglab11 Version: 11.0.0.0~b~dfsg.1-1~nd11.10+1+nd12.04+1+nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 8109 Depends: neurodebian-popularity-contest Priority: extra Section: science Filename: pool/main/e/eeglab11/eeglab11-sampledata_11.0.0.0~b~dfsg.1-1~nd11.10+1+nd12.04+1+nd12.10+1_all.deb Size: 7224818 SHA256: 25bbf59e6baaa0fd1f795f650fc89e2fc7f1c9bed1172b1adfe766a6a9b64be4 SHA1: 5b471b69135beae6f699377fdfcb606d1fcb972e MD5sum: dd4f89591443db2aab3bfc912c908f2e Description: sample EEG data for EEGLAB tutorials EEGLAB is sofwware for processing continuous or event-related EEG or other physiological data. . This package provide some tutorial data files shipped with the EEGLAB distribution. Package: fail2ban Version: 0.8.9-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 399 Depends: neurodebian-popularity-contest, python (>= 2.7.1-0ubuntu2), lsb-base (>= 2.0-7) Recommends: iptables, whois, python-pyinotify Suggests: python-gamin, mailx, system-log-daemon Homepage: http://www.fail2ban.org Priority: optional Section: net Filename: pool/main/f/fail2ban/fail2ban_0.8.9-1~nd12.10+1_all.deb Size: 133554 SHA256: e7c43aebc2f949017e62e71a131e34eb4bb5c74cd7bdd6c70030616e50654799 SHA1: 348920aa68510d01942e3cbd7bc2b96980e91411 MD5sum: ab5a7577ef0f2c46f7e1355ef5010f1c Description: ban hosts that cause multiple authentication errors Fail2ban monitors log files (e.g. /var/log/auth.log, /var/log/apache/access.log) and temporarily or persistently bans failure-prone addresses by updating existing firewall rules. Fail2ban allows easy specification of different actions to be taken such as to ban an IP using iptables or hostsdeny rules, or simply to send a notification email. . By default, it comes with filter expressions for various services (sshd, apache, qmail, proftpd, sasl etc.) but configuration can be easily extended for monitoring any other text file. All filters and actions are given in the config files, thus fail2ban can be adopted to be used with a variety of files and firewalls. Package: fslview-doc Source: fslview Version: 4.0.1-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2874 Depends: neurodebian-popularity-contest Homepage: http://www.fmrib.ox.ac.uk/fsl/fslview Priority: optional Section: doc Filename: pool/main/f/fslview/fslview-doc_4.0.1-1~nd12.10+1_all.deb Size: 2346434 SHA256: 5b22e7248c49de63f4c7a9aef54955bdaf92676d2ec1db1038bbdca5f757e4a8 SHA1: ee77261f14a1174f87d61492dc5f659da09cd36c MD5sum: a707cdad7574c20dab5e7c9ff0e27740 Description: Documentation for FSLView This package provides the online documentation for FSLView. . FSLView is part of FSL. Package: gmsl Version: 1.1.3-2~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 78 Depends: neurodebian-popularity-contest, make Homepage: http://gmsl.sourceforge.net/ Priority: optional Section: devel Filename: pool/main/g/gmsl/gmsl_1.1.3-2~nd12.10+1_all.deb Size: 16312 SHA256: c624ce3d8442fdac91d05990f58947773022cee861525c83520f6bd9db41d426 SHA1: aa9d4e0aae7f43288022aaa829c609240669cb34 MD5sum: d209e936af7489348d8b121e088e972f Description: extra functions to extend functionality of GNU Makefiles The GNU Make Standard Library (GMSL) is a collection of functions implemented using native GNU Make functionality that provide list and string manipulation, integer arithmetic, associative arrays, stacks, and debugging facilities. . Note that despite the name of this project, this library is NOT standard and is NOT written or distributed by the GNU project. Package: incf-nidash-oneclick-clients Source: incf-nidash-oneclick Version: 2.0-1~nd12.04+1+nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 28 Depends: neurodebian-popularity-contest, python (>= 2.5.0), python-dicom, dcmtk, python-httplib2 Homepage: http://xnat.incf.org/ Priority: extra Section: science Filename: pool/main/i/incf-nidash-oneclick/incf-nidash-oneclick-clients_2.0-1~nd12.04+1+nd12.10+1_all.deb Size: 9726 SHA256: 34850e6858d784f40edaa883e66923b867c1262d92203a3ccde4cd38fc505897 SHA1: efa6a60304adb482d61201f9187f1fb23807d12b MD5sum: 0f86d558162919041ff81fb2e7129410 Description: utility for pushing DICOM data to the INCF datasharing server A command line utility for anonymizing and sending DICOM data to the XNAT image database at the International Neuroinformatics Coordinating Facility (INCF). This tool is maintained by the INCF NeuroImaging DataSharing (NIDASH) task force. Package: insighttoolkit4-examples Source: insighttoolkit4 Version: 4.2.1-2~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2677 Depends: neurodebian-popularity-contest Suggests: libinsighttoolkit4-dev Conflicts: insighttoolkit-examples Replaces: insighttoolkit-examples Homepage: http://www.itk.org/ Priority: optional Section: devel Filename: pool/main/i/insighttoolkit4/insighttoolkit4-examples_4.2.1-2~nd12.10+1_all.deb Size: 2408046 SHA256: f305f9f5f32eb0cea86116b9f9d34e45db54bd58624c88d66c5cfba336057917 SHA1: 6fdcb1f6c217cad141efaba3f65e29de6cb75ffe MD5sum: 58d52adfb2463cbcff45c428a3b9dd59 Description: Image processing toolkit for registration and segmentation - examples ITK is an open-source software toolkit for performing registration and segmentation. Segmentation is the process of identifying and classifying data found in a digitally sampled representation. Typically the sampled representation is an image acquired from such medical instrumentation as CT or MRI scanners. Registration is the task of aligning or developing correspondences between data. For example, in the medical environment, a CT scan may be aligned with a MRI scan in order to combine the information contained in both. . This package contains the source for example programs. Package: ipython01x Version: 0.13.2-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4665 Depends: neurodebian-popularity-contest, python-argparse, python-configobj, python-decorator, python-pexpect, python-simplegeneric, python2.7, python (>= 2.7.1-0ubuntu2), python (<< 2.8) Recommends: python-tornado (>= 2.1.0~), python-pygments, python-qt4, python-zmq, python-matplotlib Suggests: ipython01x-doc, python-gobject, python-gtk2, python-numpy, python-profiler Conflicts: ipython-common, python2.3-ipython, python2.4-ipython Replaces: ipython-common, python2.3-ipython, python2.4-ipython Homepage: http://ipython.org/ Priority: optional Section: python Filename: pool/main/i/ipython01x/ipython01x_0.13.2-1~nd12.10+1_all.deb Size: 1286312 SHA256: 0582d740bc1f1a33af6a517f3511e3a66a52dbdcd00890473a96edc5c1a4f293 SHA1: 51bf8ad39c9f17cd47810354efe508807b0b53a6 MD5sum: 47a6395e7135f8958d2b1f7efaf874c2 Description: enhanced interactive Python shell IPython can be used as a replacement for the standard Python shell, or it can be used as a complete working environment for scientific computing (like Matlab or Mathematica) when paired with the standard Python scientific and numerical tools. It supports dynamic object introspections, numbered input/output prompts, a macro system, session logging, session restoring, complete system shell access, verbose and colored traceback reports, auto-parentheses, auto-quoting, and is embeddable in other Python programs. . This is a non-official, custom build of IPython post 0.11 with notebooks support. It provides IPython01X module thus not conflicting with system-wide installed IPython Package: ipython01x-doc Source: ipython01x Version: 0.13.2-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 16663 Depends: neurodebian-popularity-contest, libjs-jquery, ipython01x Homepage: http://ipython.org/ Priority: optional Section: doc Filename: pool/main/i/ipython01x/ipython01x-doc_0.13.2-1~nd12.10+1_all.deb Size: 7237370 SHA256: 901a02593af0166028b3e79042c6ad3130382b573bd332cc0219725f42049cd3 SHA1: d01041ef99be7cbacf2e202edb4855294f66a49b MD5sum: b52f37cc8eff0d3f508b0abd5794c8c1 Description: enhanced interactive Python shell IPython can be used as a replacement for the standard Python shell, or it can be used as a complete working environment for scientific computing (like Matlab or Mathematica) when paired with the standard Python scientific and numerical tools. It supports dynamic object introspections, numbered input/output prompts, a macro system, session logging, session restoring, complete system shell access, verbose and colored traceback reports, auto-parentheses, auto-quoting, and is embeddable in other Python programs. . This package contains the documentation. . This is a non-official, custom build of IPython post 0.11 with workbooks support. It provides IPython01X module thus not conflicting with system-wide installed IPython Package: ipython01x-notebook Source: ipython01x Version: 0.13.2-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1 Depends: neurodebian-popularity-contest, ipython01x (>= 0.13.1~git33-gcfc5692-2~) Homepage: http://ipython.org/ Priority: extra Section: python Filename: pool/main/i/ipython01x/ipython01x-notebook_0.13.2-1~nd12.10+1_all.deb Size: 898 SHA256: ca759cce540d54f6faf0b3c3f024cde830e8f4afee0f0081a627485dd83b51ec SHA1: 4fb2e204a1cce5b1053949570576995682d2f190 MD5sum: 8fdd7c8bd7fed9054acc92b9648a231f Description: enhanced interactive Python shell -- notebook dummy package This is a dummy package depending on ipython01x which ships notebook functionality inside. It is made so to stay in line to modularization of official ipython package in Debian. There is no real good reason to install this package. Package: ipython01x-parallel Source: ipython01x Version: 0.13.2-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1 Depends: neurodebian-popularity-contest, ipython01x (>= 0.13.1~git33-gcfc5692-2~) Homepage: http://ipython.org/ Priority: extra Section: oldlibs Filename: pool/main/i/ipython01x/ipython01x-parallel_0.13.2-1~nd12.10+1_all.deb Size: 826 SHA256: 66d11d9ddd9ce8b7982ebb1f21efb41203b441715e83674c3d54d0a03500280b SHA1: 1791024f575769c9162827490cbbce02e92fa708 MD5sum: 159dc968ca74420c8f1f4835a9619370 Description: enhanced interactive Python shell This is a transitional package and can be safely removed after the installation is complete. Package: ipython01x-qtconsole Source: ipython01x Version: 0.13.2-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1 Depends: neurodebian-popularity-contest, ipython01x (>= 0.13.1~git33-gcfc5692-2~) Homepage: http://ipython.org/ Priority: extra Section: python Filename: pool/main/i/ipython01x/ipython01x-qtconsole_0.13.2-1~nd12.10+1_all.deb Size: 908 SHA256: 28d34754ea400f26f869a25832d9e62f075f1a8c7773410823781db08a990511 SHA1: 61e9b6c0a2c6c81aa181a5472faa82368c94bd49 MD5sum: 1ffc5191748f4538a3938123150e4953 Description: enhanced interactive Python shell -- notebook dummy package This is a dummy package depending on ipython01x which ships qt console functionality inside. It is made so to stay in line to modularization of the official ipython package in Debian. There is no real good reason to install this package. Package: libopenwalnut1-doc Source: openwalnut Version: 1.3.1+hg5849-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 39512 Depends: neurodebian-popularity-contest, libjs-jquery Homepage: http://www.openwalnut.org Priority: extra Section: doc Filename: pool/main/o/openwalnut/libopenwalnut1-doc_1.3.1+hg5849-1~nd12.10+1_all.deb Size: 4548686 SHA256: 7471480f54b77725a0fd6d1c3d06ccb0daff4a5339c64af859a685eff5510d1d SHA1: 36e33879a41875780c35bef7c0c42c62cd2488dc MD5sum: 1d78db66fbcb7c5cee14c3a5f124916e Description: Developer documentation for the OpenWalnut visualization framework OpenWalnut is a tool for multi-modal medical and brain data visualization. Its universality allows it to be easily extended and used in a large variety of application cases. It is both, a tool for the scientific user and a powerful framework for the visualization researcher. Besides others, it is able to load NIfTI data, VTK line data and RIFF-format CNT/AVR-files. OpenWalnut provides many standard visualization tools like line integral convolution (LIC), isosurface-extraction, glyph-rendering or interactive fiber-data exploration. The powerful framework of OpenWalnut allows researchers and power-users to easily extend the functionality to their specific needs. . This package contains the core API documentation of OpenWalnut. Package: matlab-support-dev Source: matlab-support Version: 0.0.19~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 7 Depends: neurodebian-popularity-contest Conflicts: matlab-dev (<= 0.0.14~) Replaces: matlab-dev (<= 0.0.14~) Priority: optional Section: devel Filename: pool/main/m/matlab-support/matlab-support-dev_0.0.19~nd12.10+1_all.deb Size: 7226 SHA256: 3b786fa3329b2dba487558a85109d9045b41d99dd546eb01be7c9e6050850421 SHA1: 18fdd673cdfc665496abe1840fc586a3453a4a4d MD5sum: 89d8df01031330fa00c9d7ebd3851bb2 Description: helpers for packages building MATLAB toolboxes This package provides a Makefile snippet (analogous to the one used for Octave) that configures the locations for architecture independent M-files, binary MEX-extensions, and their corresponding sources. This package can be used as a build-dependency by other packages shipping MATLAB toolboxes. Package: mricron-data Source: mricron Version: 0.20120505.1~dfsg.1-1~nd12.04+1+nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1678 Depends: neurodebian-popularity-contest Homepage: http://www.cabiatl.com/mricro/mricron/index.html Priority: extra Section: science Filename: pool/main/m/mricron/mricron-data_0.20120505.1~dfsg.1-1~nd12.04+1+nd12.10+1_all.deb Size: 1664034 SHA256: 67d11d7a26ee669ce218dec8dedd8de442fcc302031ec0801be4f0a36eaf5428 SHA1: 92e4e8dc8cb2c36ee9f5b889b7596f48d8daadf5 MD5sum: 8fa66eab66da9d13c81f4c66008b472a Description: data files for MRIcron This is a GUI-based visualization and analysis tool for (functional) magnetic resonance imaging. MRIcron can be used to create 2D or 3D renderings of statistical overlay maps on brain anatomy images. Moreover, it aids drawing anatomical regions-of-interest (ROI), or lesion mapping, as well as basic analysis of functional timeseries (e.g. creating plots of peristimulus signal-change). . This package provides data files for MRIcron, such as brain atlases, anatomy, and color schemes. Package: mricron-doc Source: mricron Version: 0.20120505.1~dfsg.1-1~nd12.04+1+nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 979 Depends: neurodebian-popularity-contest Homepage: http://www.cabiatl.com/mricro/mricron/index.html Priority: extra Section: doc Filename: pool/main/m/mricron/mricron-doc_0.20120505.1~dfsg.1-1~nd12.04+1+nd12.10+1_all.deb Size: 735764 SHA256: adf029ff7c6e162ead06e7cafca311ac7780e43b95dcb97d3f4d5000ab6d4f3e SHA1: ec103ce1298820abe5e9962ed4d42e07dc7cd8d5 MD5sum: f4300f300106bdebf22685ddda9e4078 Description: data files for MRIcron This is a GUI-based visualization and analysis tool for (functional) magnetic resonance imaging. MRIcron can be used to create 2D or 3D renderings of statistical overlay maps on brain anatomy images. Moreover, it aids drawing anatomical regions-of-interest (ROI), or lesion mapping, as well as basic analysis of functional timeseries (e.g. creating plots of peristimulus signal-change). . This package provides documentation for MRIcron in HTML format. Package: neurodebian-desktop Source: neurodebian Version: 0.31~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 142 Depends: ssh-askpass-gnome | ssh-askpass, desktop-base, gnome-icon-theme, neurodebian-popularity-contest Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-desktop_0.31~nd12.10+1_all.deb Size: 115328 SHA256: d8d387d2adb126e6cef6055e2e8bc8a3233f7f2c8b82aee8ec74cabcd4bf0ab9 SHA1: e882fa1c3a98251b681bfc830fd6737918df2925 MD5sum: 014f1433790a339dac40338c58a2cc8b Description: neuroscience research environment This package contains NeuroDebian artwork (icons, background image) and a NeuroDebian menu featuring most popular neuroscience tools automatically installed upon initial invocation. Package: neurodebian-dev Source: neurodebian Version: 0.31~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 5762 Depends: devscripts, cowbuilder, neurodebian-keyring Recommends: python, zerofree, moreutils, time, ubuntu-keyring, debian-archive-keyring, apt-utils Suggests: virtualbox-ose, virtualbox-ose-fuse Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-dev_0.31~nd12.10+1_all.deb Size: 5351218 SHA256: f3f3870eafd8d3d2fbe27336306f6e1e128484e89d52bc5434f170047f8aac6e SHA1: 6cfc3fb79c65ff92a038e109c77216e6663f5d7d MD5sum: 017c1b0ec9448839991e147bcd89540c Description: NeuroDebian development tools neuro.debian.net sphinx website sources and development tools used by NeuroDebian to provide backports for a range of Debian/Ubuntu releases. Package: neurodebian-guest-additions Source: neurodebian Version: 0.31~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 107 Pre-Depends: virtualbox-ose-guest-utils, virtualbox-ose-guest-x11, virtualbox-ose-guest-dkms Depends: sudo, neurodebian-desktop, gdm | lightdm, zenity Recommends: chromium-browser, update-manager-gnome, update-notifier Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-guest-additions_0.31~nd12.10+1_all.deb Size: 15204 SHA256: 9f06a727c7ff1b157a11619569ae8c42e94be2d3280f68abb54ef3f5fea413a9 SHA1: f69da12c1c20376e43e65e76584b150053ae88ef MD5sum: fb44ad1ff9776856e808e7670078e7f1 Description: NeuroDebian guest additions (DO NOT INSTALL OUTSIDE VIRTUALBOX) This package configures a Debian installation as a guest operating system in a VirtualBox-based virtual machine for NeuroDebian. . DO NOT install this package unless you know what you are doing! For example, installation of this package relaxes several security mechanisms. Package: neurodebian-keyring Source: neurodebian Version: 0.31~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 8 Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-keyring_0.31~nd12.10+1_all.deb Size: 7498 SHA256: 80b3484dc0ac51a16902b0446fcc417b8acd32dc981c55d32e943e5c7e940b16 SHA1: 484f772be89e370facc80edfa8acd0b6a5833469 MD5sum: c482eea8933d8567dcb0de2d850ede12 Description: GnuPG archive keys of the NeuroDebian archive The NeuroDebian project digitally signs its Release files. This package contains the archive keys used for that. Package: neurodebian-popularity-contest Source: neurodebian Version: 0.31~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 7 Depends: popularity-contest Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-popularity-contest_0.31~nd12.10+1_all.deb Size: 6728 SHA256: 2a9783e2dccf36c64927435ddc20cdd487c02e1779d08f30ea0b4ffb522db4e7 SHA1: 7e792edd4d069dafdd3cbe3d7c89be3e84933b5a MD5sum: 965debd38333f19d98d4a3f310ad4880 Description: Helper for NeuroDebian popularity contest submissions This package is a complement to the generic popularity-contest package to enable anonymous submission of usage statistics to NeuroDebian in addition to the popcon submissions to the underlying distribution (e.g. Debian or Ubuntu) popcon server. . Your participation in popcon is important for following reasons: - Popular packages receive more attention from developers, bugs are fixed faster and updates are provided quicker. - Assure that we do not drop support for a previous release of Debian or Ubuntu while are active users. - User statistics could be used by upstream research software developers to acquire funding for continued development. . It has an effect only if you have decided to participate in the Popularity Contest of your distribution, i.e. Debian or Ubuntu. You can always enable or disable your participation in popcon by running 'dpkg-reconfigure popularity-contest' as root. Package: nifti2dicom-data Source: nifti2dicom Version: 0.4.5-1~nd12.04+1+nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 606 Depends: neurodebian-popularity-contest Homepage: https://github.com/biolab-unige/nifti2dicom Priority: optional Section: science Filename: pool/main/n/nifti2dicom/nifti2dicom-data_0.4.5-1~nd12.04+1+nd12.10+1_all.deb Size: 615000 SHA256: 272ed3d474a443b383fc5f818890d71d703a6860d58ab6fad247607126fe0442 SHA1: a1e46e31f600d80a861cc6fe5af6a78182b356e6 MD5sum: 61cff1026ec14a6dca81be2aef8d6fe3 Description: data files for nifti2dicom This package contains architecture-independent supporting data files required for use with nifti2dicom, such as such as documentation, icons, and translations. Package: nuitka Version: 0.4.2+ds-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1655 Depends: neurodebian-popularity-contest, g++-4.6 (>= 4.6.1) | g++-4.5 | g++-4.4 | clang (>= 3.0), scons (>= 2.0.0), python-dev (>= 2.6.6-2), python (>= 2.7.1-0ubuntu2) Recommends: python-lxml (>= 2.3), python-qt4 (>= 4.8.6) Suggests: ccache Homepage: http://nuitka.net Priority: optional Section: python Filename: pool/main/n/nuitka/nuitka_0.4.2+ds-1~nd12.10+1_all.deb Size: 399270 SHA256: cebe21ab91878d62498f353297806bff58cc4d74547a6900ee8433ed40713c4f SHA1: 2f9f40a93b6fa79650078619b533759a2c0a51d4 MD5sum: 92ffb99cf21a6a94741683e90b68ef61 Description: Python compiler with full language support and CPython compatibility This Python compiler achieves full language compatibility and compiles Python code into compiled objects that are not second class to pure Python objects at all. Package: opensesame Version: 0.27.2-4~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 25510 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-qt4, python-pygame (>= 1.8.1~), python-numpy (>= 1.3.0~), python-qscintilla2, gnome-icon-theme Recommends: python-serial (>= 2.3~), psychopy (>= 1.64.0), python-pyaudio (>= 0.2.4), python-imaging (>= 1.1.7), python-opengl (>= 3.0.1), expyriment (>= 0.5.2), ipython-qtconsole (>= 0.12), python-markdown Homepage: http://www.cogsci.nl/software/opensesame Priority: extra Section: science Filename: pool/main/o/opensesame/opensesame_0.27.2-4~nd12.10+1_all.deb Size: 24408762 SHA256: 82155403767a00b5b9032bd068409e6969d7415ddccd26824563a14ea771a1f0 SHA1: 98ba89873ed7ff030e1f9fc3d51baf62423ea875 MD5sum: a881291cf894286a162aca498b33e728 Description: graphical experiment builder for the social sciences This graphical environment provides an easy to use, point-and-click interface for creating psychological experiments. In addition to a powerful sketchpad for creating visual stimuli, OpenSesame features a sampler and synthesizer for sound playback. For more complex tasks, OpenSesame supports Python scripting using the built-in editor with syntax highlighting. Package: packaging-tutorial Version: 0.8~nd0 Architecture: all Maintainer: Lucas Nussbaum Installed-Size: 1550 Priority: extra Section: doc Filename: pool/main/p/packaging-tutorial/packaging-tutorial_0.8~nd0_all.deb Size: 1488332 SHA256: 491bc5917f698fee06888998e8a295a6caac2950148bb160b457aff72437eadb SHA1: c5d75d04b01f681ead660ce8d8fe068ab887fba0 MD5sum: 8fbf7c362fd4091a78c50404eb694402 Description: introduction to Debian packaging This tutorial is an introduction to Debian packaging. It teaches prospective developers how to modify existing packages, how to create their own packages, and how to interact with the Debian community. In addition to the main tutorial, it includes three practical sessions on modifying the 'grep' package, and packaging the 'gnujump' game and a Java library. Package: psychopy Version: 1.76.00.dfsg-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 5340 Depends: neurodebian-popularity-contest, python (>= 2.4), python-support (>= 0.90.0), python-pyglet | python-pygame, python-opengl, python-numpy, python-scipy, python-matplotlib, python-lxml, python-configobj Recommends: python-wxgtk2.8, python-pyglet, python-pygame, python-openpyxl, python-imaging, python-serial, python-pyo, libavbin0, ipython Suggests: python-iolabs, python-pyxid Homepage: http://www.psychopy.org Priority: optional Section: science Filename: pool/main/p/psychopy/psychopy_1.76.00.dfsg-1~nd12.10+1_all.deb Size: 3177708 SHA256: bf697c91e97fd97e238a844aba82bcea5becfcdae0429b2ed13129097b6ea34d SHA1: de75ee849bf0cd52e7f0df06fb0e437379f0d5bc MD5sum: 2a561b8d62757f4cd73095f797e8bf78 Description: environment for creating psychology stimuli in Python PsychoPy provides an environment for creating psychology stimuli using Python scripting language. It combines the graphical strengths of OpenGL with easy Python syntax to give psychophysics a free and simple stimulus presentation and control package. . The goal is to provide, for the busy scientist, tools to control timing and windowing and a simple set of pre-packaged stimuli and methods. PsychoPy features . - IDE GUI for coding in a powerful scripting language (Python) - Builder GUI for rapid development of stimulation sequences - Use of hardware-accelerated graphics (OpenGL) - Integration with Spectrascan PR650 for easy monitor calibration - Simple routines for staircase and constant stimuli experimental methods as well as curve-fitting and bootstrapping - Simple (or complex) GUIs via wxPython - Easy interfaces to joysticks, mice, sound cards etc. via PyGame - Video playback (MPG, DivX, AVI, QuickTime, etc.) as stimuli Python-Version: 2.7 Package: psychtoolbox-3-common Source: psychtoolbox-3 Version: 3.0.10.20130114.dfsg1-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 48860 Depends: neurodebian-popularity-contest Recommends: subversion Homepage: http://psychtoolbox.org Priority: extra Section: science Filename: pool/main/p/psychtoolbox-3/psychtoolbox-3-common_3.0.10.20130114.dfsg1-1~nd12.10+1_all.deb Size: 19678518 SHA256: ad57d02b6039af176007cf3efdd2afcbbcd602419d1457f532fb28fe15f06635 SHA1: 0e002699087d8e9a3b5c41f9bd1dc7ca6de369d7 MD5sum: e1319b9bd63cb0ca52399d5fd96178db Description: toolbox for vision research -- arch/interpreter independent part Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains architecture independent files (such as .m scripts) Package: python-brian Source: brian Version: 1.4.1-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2336 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-brian-lib (>= 1.4.1-1~nd12.10+1), python-matplotlib (>= 0.90.1), python-numpy (>= 1.3.0), python-scipy (>= 0.7.0) Recommends: python-sympy Suggests: python-brian-doc, python-nose, python-cherrypy Homepage: http://www.briansimulator.org/ Priority: extra Section: python Filename: pool/main/b/brian/python-brian_1.4.1-1~nd12.10+1_all.deb Size: 549134 SHA256: 02dc3313fbccc63980a6663e502845d6006df630a9dcac9163438bbe2ee28fe5 SHA1: bf16c73002c99dd728f618a5c4f6dbe54ccc9ed6 MD5sum: fc9f21a9b990da87150cdbaccae59802 Description: simulator for spiking neural networks Brian is a clock-driven simulator for spiking neural networks. It is designed with an emphasis on flexibility and extensibility, for rapid development and refinement of neural models. Neuron models are specified by sets of user-specified differential equations, threshold conditions and reset conditions (given as strings). The focus is primarily on networks of single compartment neuron models (e.g. leaky integrate-and-fire or Hodgkin-Huxley type neurons). Features include: - a system for specifying quantities with physical dimensions - exact numerical integration for linear differential equations - Euler, Runge-Kutta and exponential Euler integration for nonlinear differential equations - synaptic connections with delays - short-term and long-term plasticity (spike-timing dependent plasticity) - a library of standard model components, including integrate-and-fire equations, synapses and ionic currents - a toolbox for automatically fitting spiking neuron models to electrophysiological recordings Package: python-brian-doc Source: brian Version: 1.4.1-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 6811 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-brian Homepage: http://www.briansimulator.org/ Priority: extra Section: doc Filename: pool/main/b/brian/python-brian-doc_1.4.1-1~nd12.10+1_all.deb Size: 2250674 SHA256: cd2074565599bfe932b248d9d1f3b6d33c746815828186699b8cb23d26f6a39f SHA1: 6ae3811f66847618b743ad140810e9d82f260fad MD5sum: f5d39f86c6b658c2642f6f0244e9c109 Description: simulator for spiking neural networks - documentation Brian is a clock-driven simulator for spiking neural networks. . This package provides user's manual (in HTML format), examples and demos. Package: python-dicom Source: pydicom Version: 0.9.7-1~nd12.04+1+nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1790 Depends: neurodebian-popularity-contest, python2.7, python (>= 2.7.1-0ubuntu2), python (<< 2.8) Recommends: python-numpy, python-imaging Suggests: python-matplotlib Homepage: http://code.google.com/p/pydicom/ Priority: optional Section: python Filename: pool/main/p/pydicom/python-dicom_0.9.7-1~nd12.04+1+nd12.10+1_all.deb Size: 419248 SHA256: f3f77a173128d07565fa883296bb7e2e6ac71c2c063503b35dd203af84045cc3 SHA1: 4cb7eb491eb9c51dfffa5af9f9c962df613bc137 MD5sum: 843bc43a1ba02475ab7b61e3ca6ceb07 Description: DICOM medical file reading and writing pydicom is a pure Python module for parsing DICOM files. DICOM is a standard (http://medical.nema.org) for communicating medical images and related information such as reports and radiotherapy objects. . pydicom makes it easy to read DICOM files into natural pythonic structures for easy manipulation. Modified datasets can be written again to DICOM format files. Package: python-dipy Source: dipy Version: 0.6.0-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2285 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-numpy, python-scipy, python-dipy-lib (>= 0.6.0-1~nd12.10+1) Recommends: python-matplotlib, python-vtk, python-nose, python-nibabel, python-tables Suggests: ipython Provides: python2.7-dipy Homepage: http://nipy.org/dipy Priority: extra Section: python Filename: pool/main/d/dipy/python-dipy_0.6.0-1~nd12.10+1_all.deb Size: 1586250 SHA256: c723134e582f1f4134bee2f943f0fc0872417b52a713545f3c56c6d1773040a9 SHA1: 8e1cedd72bb06c083e3fb02acb7fb23b7273522a MD5sum: e70f7eb811f0b7a86b16d11d2c73c364 Description: toolbox for analysis of MR diffusion imaging data Dipy is a toolbox for the analysis of diffusion magnetic resonance imaging data. It features: - Reconstruction algorithms, e.g. GQI, DTI - Tractography generation algorithms, e.g. EuDX - Intelligent downsampling of tracks - Ultra fast tractography clustering - Resampling datasets with anisotropic voxels to isotropic - Visualizing multiple brains simultaneously - Finding track correspondence between different brains - Warping tractographies into another space, e.g. MNI space - Reading many different file formats, e.g. Trackvis or NIfTI - Dealing with huge tractographies without memory restrictions - Playing with datasets interactively without storing Python-Version: 2.7 Package: python-dipy-doc Source: dipy Version: 0.6.0-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 5076 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-dipy Homepage: http://nipy.org/dipy Priority: extra Section: doc Filename: pool/main/d/dipy/python-dipy-doc_0.6.0-1~nd12.10+1_all.deb Size: 3616776 SHA256: b5dcd26b7fd68ea10da38674d2717cb1c6bcc8fb045bc69e79a0b4afed809650 SHA1: 42ab9896a04587cae1cd4d097761f8ce0a7f2941 MD5sum: 30d8cb43d8551e72308eaf21c0732fec Description: toolbox for analysis of MR diffusion imaging data -- documentation Dipy is a toolbox for the analysis of diffusion magnetic resonance imaging data. . This package provides the documentation in HTML format. Package: python-joblib Source: joblib Version: 0.6.5-1~nd12.04+1+nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 175 Depends: neurodebian-popularity-contest, python (>= 2.5), python-support (>= 0.90.0) Recommends: python-numpy, python-nose, python-simplejson Homepage: http://packages.python.org/joblib/ Priority: optional Section: python Filename: pool/main/j/joblib/python-joblib_0.6.5-1~nd12.04+1+nd12.10+1_all.deb Size: 52690 SHA256: 7cdd6f6998be06124635d64c1993ec41abc7520c83d71a6de17cd104833a6fdc SHA1: 9f19da28d98df6a76983d00eb64b3b6de2f9f8f6 MD5sum: 408d1245807b0d85afdbb3aa835bfc4b Description: tools to provide lightweight pipelining in Python Joblib is a set of tools to provide lightweight pipelining in Python. In particular, joblib offers: - transparent disk-caching of the output values and lazy re-evaluation (memoize pattern) - easy simple parallel computing - logging and tracing of the execution . Joblib is optimized to be fast and robust in particular on large, long-running functions and has specific optimizations for numpy arrays. Package: python-mdp Source: mdp Version: 3.3+git6-g7bbd889-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1495 Depends: neurodebian-popularity-contest, python2.7, python (>= 2.7.1-0ubuntu2), python (<< 2.8), python-numpy Recommends: python-scipy, python-libsvm, python-joblib, python-scikits-learn | python-sklearn, python-pp Suggests: python-py, shogun-python-modular Enhances: python-mvpa Homepage: http://mdp-toolkit.sourceforge.net/ Priority: optional Section: python Filename: pool/main/m/mdp/python-mdp_3.3+git6-g7bbd889-1~nd12.10+1_all.deb Size: 478636 SHA256: b207ab09eba4efd4f211c30dfcad14fd1d186545f49161e0e577ae0070383bf6 SHA1: 12d82087d31fb3448cfa153cc7f6ca57e64e7272 MD5sum: 528bbc072c4a59d025f381b676c3c6f8 Description: Modular toolkit for Data Processing Python data processing framework for building complex data processing software by combining widely used machine learning algorithms into pipelines and networks. Implemented algorithms include: Principal Component Analysis (PCA), Independent Component Analysis (ICA), Slow Feature Analysis (SFA), Independent Slow Feature Analysis (ISFA), Growing Neural Gas (GNG), Factor Analysis, Fisher Discriminant Analysis (FDA), and Gaussian Classifiers. . This package contains MDP for Python 2. Package: python-mpi4py-doc Source: mpi4py Version: 1.3+hg20120611-2~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 284 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-mpi4py Homepage: http://code.google.com/p/mpi4py/ Priority: extra Section: doc Filename: pool/main/m/mpi4py/python-mpi4py-doc_1.3+hg20120611-2~nd12.10+1_all.deb Size: 82524 SHA256: a71a3e30acd4ca335666f96ef827fdca039a1873e8a2dd45f579aed595d561ec SHA1: b3b21af55fab7ce1775ba864328d0023b53af1a2 MD5sum: 305217a25234435dd5ae7761c214dee8 Description: bindings of the MPI standard -- documentation MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. . mpi4py is constructed on top of the MPI-1/MPI-2 specification and provides an object oriented interface which closely follows MPI-2 C++ bindings. It supports point-to-point (sends, receives) and collective (broadcasts, scatters, gathers) communications of any picklable Python object as well as optimized communications of Python object exposing the single-segment buffer interface (NumPy arrays, builtin bytes/string/array objects). . This package provides HTML rendering of the user's manual. Package: python-mvpa2 Source: pymvpa2 Version: 2.2.0-3~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4242 Depends: neurodebian-popularity-contest, python (>= 2.6), python-numpy, python-support (>= 0.90.0), python-mvpa2-lib (>= 2.2.0-3~nd12.10+1) Recommends: python-h5py, python-lxml, python-matplotlib, python-mdp, python-nibabel, python-psutil, python-psyco, python-pywt, python-reportlab, python-scipy, python-sklearn, shogun-python-modular, liblapack-dev Suggests: fslview, fsl, python-mvpa2-doc, python-nose, python-openopt, python-rpy2 Provides: python2.7-mvpa2 Homepage: http://www.pymvpa.org Priority: optional Section: python Filename: pool/main/p/pymvpa2/python-mvpa2_2.2.0-3~nd12.10+1_all.deb Size: 2400392 SHA256: 9cdc37821a7c674a8c612136f9c42c698084227e98e00c01a9361b0699c973bc SHA1: 9dc1b29ea61a6cf0b4a0ad557bd5cbe1a95bce7a MD5sum: f07b9f041ef964d8570bbeefad3a2d57 Description: multivariate pattern analysis with Python v. 2 PyMVPA eases pattern classification analyses of large datasets, with an accent on neuroimaging. It provides high-level abstraction of typical processing steps (e.g. data preparation, classification, feature selection, generalization testing), a number of implementations of some popular algorithms (e.g. kNN, Ridge Regressions, Sparse Multinomial Logistic Regression), and bindings to external machine learning libraries (libsvm, shogun). . While it is not limited to neuroimaging data (e.g. fMRI, or EEG) it is eminently suited for such datasets. . This is a package of PyMVPA v.2. Previously released stable version is provided by the python-mvpa package. Python-Version: 2.7 Package: python-mvpa2-doc Source: pymvpa2 Version: 2.2.0-3~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 17216 Depends: neurodebian-popularity-contest, libjs-jquery, libjs-underscore Suggests: python-mvpa2, python-mvpa2-tutorialdata, ipython-notebook Homepage: http://www.pymvpa.org Priority: optional Section: doc Filename: pool/main/p/pymvpa2/python-mvpa2-doc_2.2.0-3~nd12.10+1_all.deb Size: 5141654 SHA256: d827d2634ecea0d91f12788b75b79c72bbac774565be6dc59f4d632683d3d08e SHA1: 47e5e35ff0d1e0f28b908e2fe01b1ac6fce62d37 MD5sum: 41d4d415688f905345ba9146d1adc15e Description: documentation and examples for PyMVPA v. 2 This is an add-on package for the PyMVPA framework. It provides a HTML documentation (tutorial, FAQ etc.), and example scripts. In addition the PyMVPA tutorial is also provided as IPython notebooks. Package: python-neo Source: neo Version: 0.2.1.1-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2414 Depends: neurodebian-popularity-contest, python2.7, python (>= 2.7.1-0ubuntu2), python (<< 2.8), python-numpy (>= 1:1.3~), python-quantities (>= 0.9.0~) Recommends: python-scipy (>= 0.8~), python-tables (>= 2.2~), libjs-jquery, libjs-underscore Suggests: python-nose Homepage: http://neuralensemble.org/trac/neo Priority: extra Section: python Filename: pool/main/n/neo/python-neo_0.2.1.1-1~nd12.10+1_all.deb Size: 1431096 SHA256: 0e7507d79ccc6d8da079e279c419571a6439915d6dad89711afac2349170b53f SHA1: 7a5174cf5f57d52865205d02a64f51c3ba3d3e4a MD5sum: f6a8587f1337ee0ceba2e7232f4d70e5 Description: Python IO library for electrophysiological data formats NEO stands for Neural Ensemble Objects and is a project to provide common classes and concepts for dealing with electro-physiological (in vivo and/or simulated) data to facilitate collaborative software/algorithm development. In particular Neo provides: a set a classes for data representation with precise definitions, an IO module with a simple API, documentation, and a set of examples. . NEO offers support for reading data from numerous proprietary file formats (e.g. Spike2, Plexon, AlphaOmega, BlackRock, Axon), read/write support for various open formats (e.g. KlustaKwik, Elan, WinEdr, WinWcp, PyNN), as well as support common file formats, such as HDF5 with Neo-structured content (NeoHDF5, NeoMatlab). . Neo's IO facilities can be seen as a pure-Python and open-source Neuroshare replacement. Package: python-nibabel Source: nibabel Version: 1.3.0-1~nd12.04+1+nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4152 Depends: neurodebian-popularity-contest, python (>= 2.5), python-support (>= 0.90.0), python-numpy, python-scipy Recommends: python-dicom, python-fuse Suggests: python-nibabel-doc Provides: python2.7-nibabel Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: python Filename: pool/main/n/nibabel/python-nibabel_1.3.0-1~nd12.04+1+nd12.10+1_all.deb Size: 1816340 SHA256: f4393634a41ed4334f5833115835ac674f8fd2f0aaac8a8acecaed5d841b37f2 SHA1: 6e07b237d683b17e0807de6d3faaf078698e2968 MD5sum: 3ec51142db5c228429cb67563faa3222 Description: Python bindings to various neuroimaging data formats NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. . This package also provides a commandline tools: . - dicomfs - FUSE filesystem on top of a directory with DICOMs - nib-ls - 'ls' for neuroimaging files - parrec2nii - for conversion of PAR/REC to NIfTI images Python-Version: 2.7 Package: python-nibabel-doc Source: nibabel Version: 1.3.0-1~nd12.04+1+nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2440 Depends: neurodebian-popularity-contest, libjs-jquery Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: doc Filename: pool/main/n/nibabel/python-nibabel-doc_1.3.0-1~nd12.04+1+nd12.10+1_all.deb Size: 444170 SHA256: 01df549d5c4ea10fc4712a4ee44ba0d4f6eb3ac668043365cd5a1063bcfc7bbf SHA1: 229ecd36ecd5903eafc04e3553ba1609d861e9c1 MD5sum: 84cbf46b773013a504beb30c532bd5b4 Description: documentation for NiBabel NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. . This package provides the documentation in HTML format. Package: python-nipy Source: nipy Version: 0.3.0-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2863 Depends: neurodebian-popularity-contest, python (>= 2.5), python-numpy (>= 1:1.2), python-support (>= 0.90.0), python-scipy, python-nibabel, python-nipy-lib (>= 0.3.0-1~nd12.10+1) Recommends: python-matplotlib, mayavi2, python-sympy Suggests: python-mvpa Provides: python2.7-nipy Homepage: http://neuroimaging.scipy.org Priority: extra Section: python Filename: pool/main/n/nipy/python-nipy_0.3.0-1~nd12.10+1_all.deb Size: 784438 SHA256: 8b25c5d69e46df75985d7370a060691b561963322e0cf3d2cf6b850e5edb030a SHA1: e8544bc3a6b4b6f522387ae82b721b28ccfd5a23 MD5sum: b2c65115481509f8c89a3c4b45ef20d9 Description: Analysis of structural and functional neuroimaging data NiPy is a Python-based framework for the analysis of structural and functional neuroimaging data. It provides functionality for - General linear model (GLM) statistical analysis - Combined slice time correction and motion correction - General image registration routines with flexible cost functions, optimizers and re-sampling schemes - Image segmentation - Basic visualization of results in 2D and 3D - Basic time series diagnostics - Clustering and activation pattern analysis across subjects - Reproducibility analysis for group studies Python-Version: 2.7 Package: python-nipy-doc Source: nipy Version: 0.3.0-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 10231 Depends: neurodebian-popularity-contest, libjs-jquery Recommends: python-nipy Homepage: http://neuroimaging.scipy.org Priority: extra Section: doc Filename: pool/main/n/nipy/python-nipy-doc_0.3.0-1~nd12.10+1_all.deb Size: 3854166 SHA256: e28a2e5f24771f31983880ea2539b2d56b7343e39747f7402e4e8befc9b92ebe SHA1: 0c7fee0614a9f70b7feebf6bf8877cb6384b589b MD5sum: 5903a71ed70da87e6f5decd1c0e0b141 Description: documentation and examples for NiPy This package contains NiPy documentation in various formats (HTML, TXT) including * User manual * Developer guidelines * API documentation Package: python-nipype Source: nipype Version: 0.8-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2657 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-scipy, python-simplejson, python-traits (>= 4.0) | python-traits4, python-nibabel (>= 1.0.0~), python-networkx (>= 1.3), python-cfflib Recommends: ipython, python-nose, graphviz Suggests: fsl, afni, python-nipy, slicer, matlab-spm8, python-pyxnat Provides: python2.7-nipype Homepage: http://nipy.sourceforge.net/nipype/ Priority: optional Section: python Filename: pool/main/n/nipype/python-nipype_0.8-1~nd12.10+1_all.deb Size: 592012 SHA256: 4d6e510efa2dab6e4ee3083bb0605ccf3612ba1be1e4f39e7e2525fa0bf4a74d SHA1: 7d0489086cd3f9822f29b20bffae8a80689a728f MD5sum: b8b3f310a0a4821f4a754b0b83f9131c Description: Neuroimaging data analysis pipelines in Python Nipype interfaces Python to other neuroimaging packages and creates an API for specifying a full analysis pipeline in Python. Currently, it has interfaces for SPM, FSL, AFNI, Freesurfer, but could be extended for other packages (such as lipsia). Package: python-nipype-doc Source: nipype Version: 0.8-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 15050 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-nipype Homepage: http://nipy.sourceforge.net/nipype/ Priority: optional Section: doc Filename: pool/main/n/nipype/python-nipype-doc_0.8-1~nd12.10+1_all.deb Size: 7169930 SHA256: 8b6a070d357376786af72faf63190fdee3e51f7193946f705a6cecc47368e4a4 SHA1: 820cc4f2acd0c54b37c96c2a04bd204a4c546db2 MD5sum: f2c9004ecd4042a6a22633723674829a Description: Neuroimaging data analysis pipelines in Python -- documentation Nipype interfaces Python to other neuroimaging packages and creates an API for specifying a full analysis pipeline in Python. Currently, it has interfaces for SPM, FSL, AFNI, Freesurfer, but could be extended for other packages (such as lipsia). . This package contains Nipype examples and documentation in various formats. Package: python-openpyxl Source: openpyxl Version: 1.6.1+hg2-g4bff8e3-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 291 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0) Recommends: python-nose Homepage: http://bitbucket.org/ericgazoni/openpyxl/ Priority: optional Section: python Filename: pool/main/o/openpyxl/python-openpyxl_1.6.1+hg2-g4bff8e3-1~nd12.10+1_all.deb Size: 62036 SHA256: a47190b1b27e4cf5766f03106d4696742ec1f4b13a45ac1b619072f6f6cd6bda SHA1: c5200590bb1891d43b10a615c268b1cf03012766 MD5sum: 30449e2a38b1e65c3864e18763a7207d Description: module to read/write OpenXML xlsx/xlsm files Openpyxl is a pure Python module to read/write Excel 2007 (OpenXML) xlsx/xlsm files. Package: python-pandas Source: pandas Version: 0.11.0-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4619 Depends: neurodebian-popularity-contest, python2.7, python (>= 2.7.1-0ubuntu2), python (<< 2.8), python-dateutil, python-tz, python-numpy (>= 1:1.6~), python-pandas-lib (>= 0.11.0-1~nd12.10+1) Recommends: python-scipy, python-matplotlib, python-tables, python-xlrd, python-statsmodels, python-openpyxl, python-xlwt Suggests: python-pandas-doc Provides: python2.7-pandas Homepage: http://pandas.sourceforge.net Priority: optional Section: python Filename: pool/main/p/pandas/python-pandas_0.11.0-1~nd12.10+1_all.deb Size: 947090 SHA256: f66210f0282c34191a23a06b72c50f84128b0abc46b3791b0355714cc1e213c9 SHA1: 6720145926d384b902018df21fed92cd3551ce17 MD5sum: 57d8c535a6c255250ef8451cdb9ef954 Description: data structures for "relational" or "labeled" data pandas is a Python package providing fast, flexible, and expressive data structures designed to make working with "relational" or "labeled" data both easy and intuitive. It aims to be the fundamental high-level building block for doing practical, real world data analysis in Python. pandas is well suited for many different kinds of data: . - Tabular data with heterogeneously-typed columns, as in an SQL table or Excel spreadsheet - Ordered and unordered (not necessarily fixed-frequency) time series data. - Arbitrary matrix data (homogeneously typed or heterogeneous) with row and column labels - Any other form of observational / statistical data sets. The data actually need not be labeled at all to be placed into a pandas data structure . This package contains the Python 2 version. Package: python-pp Source: parallelpython Version: 1.6.2-2~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 119 Depends: neurodebian-popularity-contest, python, python-support (>= 0.90.0) Homepage: http://www.parallelpython.com/ Priority: optional Section: python Filename: pool/main/p/parallelpython/python-pp_1.6.2-2~nd12.10+1_all.deb Size: 34266 SHA256: ef38c6a84e0c4aa56fda6059fd9e1b9915a4786241c4aaa3b59bc7a718f76e48 SHA1: c5aba371df92f863489b7edaf6d3d020ae612157 MD5sum: 7f84a40d07feaa43a5e794c65f09531b Description: parallel and distributed programming toolkit for Python Parallel Python module (pp) provides an easy and efficient way to create parallel-enabled applications for SMP computers and clusters. pp module features cross-platform portability and dynamic load balancing. Thus application written with PP will parallelize efficiently even on heterogeneous and multi-platform clusters (including clusters running other application with variable CPU loads). Python-Version: 2.7 Package: python-pymc-doc Source: pymc Version: 2.2+ds-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1840 Depends: neurodebian-popularity-contest, libjs-jquery, libjs-underscore Homepage: http://pymc-devs.github.com/pymc/ Priority: extra Section: doc Filename: pool/main/p/pymc/python-pymc-doc_2.2+ds-1~nd12.10+1_all.deb Size: 906858 SHA256: 59074e78f8759a1d2cc3f7798cac2ae5c9991ecf4fd266909ef1252e91bfe6fe SHA1: 0cc0b5fb138b9896e1905ba8f80e97b338fab08b MD5sum: 0073ef238c61a59b8ff50c2f2534d15b Description: Bayesian statistical models and fitting algorithms PyMC is a Python module that implements Bayesian statistical models and fitting algorithms, including Markov chain Monte Carlo. Its flexibility and extensibility make it applicable to a large suite of problems. Along with core sampling functionality, PyMC includes methods for summarizing output, plotting, goodness-of-fit and convergence diagnostics. . This package provides the documentation in HTML format. Package: python-pynn Source: pynn Version: 0.7.5-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 763 Depends: neurodebian-popularity-contest, python (>= 2.5), python-support (>= 0.90.0) Recommends: python-jinja2, python-cheetah Suggests: python-neuron, python-brian, python-csa Homepage: http://neuralensemble.org/trac/PyNN Priority: extra Section: python Filename: pool/main/p/pynn/python-pynn_0.7.5-1~nd12.10+1_all.deb Size: 175772 SHA256: 6aca773230b5cdc305e46692d4c2e7e6472ac253aae49fdf8c3db2505a64ea27 SHA1: 64017820e9f3c2884c9968983267cda08954bc70 MD5sum: d49969ba06ba7428a644f39639464b5f Description: simulator-independent specification of neuronal network models PyNN allows for coding a model once and run it without modification on any simulator that PyNN supports (currently NEURON, NEST, PCSIM and Brian). PyNN translates standard cell-model names and parameter names into simulator-specific names. Package: python-pyxnat Source: pyxnat Version: 0.9.1+git39-g96bf069-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 862 Depends: neurodebian-popularity-contest, python-lxml, python-simplejson, python-httplib2 (>= 0.7.0) Recommends: python-networkx, python-matplotlib Homepage: http://packages.python.org/pyxnat/ Priority: extra Section: python Filename: pool/main/p/pyxnat/python-pyxnat_0.9.1+git39-g96bf069-1~nd12.10+1_all.deb Size: 190338 SHA256: 08b91ebab764e01025c72071be3e9888c3ce9e07099aade433105d3f5a37ed2d SHA1: d441abc798fb076797de9779a6875840cac0347e MD5sum: 39e65e49f17a5ff4237c5009b77bd45b Description: Interface to access neuroimaging data on XNAT servers pyxnat is a simple Python library that relies on the REST API provided by the XNAT platform since its 1.4 version. XNAT is an extensible database for neuroimaging data. The main objective is to ease communications with an XNAT server to plug-in external tools or Python scripts to process the data. It features: . - resources browsing capabilities - read and write access to resources - complex searches - disk-caching of requested files and resources Package: python-scikits-learn Source: scikit-learn Version: 0.13-2~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 30 Depends: neurodebian-popularity-contest, python-sklearn Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: oldlibs Filename: pool/main/s/scikit-learn/python-scikits-learn_0.13-2~nd12.10+1_all.deb Size: 28138 SHA256: 68389fdd6ad5ea906c0e56b9cf727722d2b6306d5e2fc1c92e3a04e5335d1ff8 SHA1: f8c06f7dc1ca09093cc89a2a6958f13e7be25898 MD5sum: 91531a99630e141da0a32f7866d7113e Description: transitional compatibility package for scikits.learn -> sklearn migration Provides old namespace (scikits.learn) and could be removed if dependent code migrated to use sklearn for clarity of the namespace. Package: python-skimage Source: skimage Version: 0.7.2-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4389 Depends: neurodebian-popularity-contest, python (>= 2.6), python-numpy, python-support (>= 0.90.0), python2.7, python-scipy (>= 0.10), python-skimage-lib (>= 0.7.2-1~nd12.10+1), libfreeimage3 Recommends: python-nose, python-matplotlib (>= 1.0), python-imaging Suggests: python-skimage-doc, python-opencv Provides: python2.7-skimage Homepage: http://scikits-image.org Priority: optional Section: python Filename: pool/main/s/skimage/python-skimage_0.7.2-1~nd12.10+1_all.deb Size: 3155780 SHA256: 392df1b4e8e3870bf6768764aea22cf3b7eb6d3a46f8fa2b4ab3265b4c3d4b1e SHA1: d117de4bc8d07eb8423b352ef1ad4977eb937b03 MD5sum: 3bd131f4fff3ab602af73194d1561e1f Description: Python modules for image processing scikits-image is a collection of image processing algorithms for Python. It performs tasks such as image loading, filtering, morphology, segmentation, color conversions, and transformations. Package: python-skimage-doc Source: skimage Version: 0.7.2-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 8354 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-skimage Homepage: http://scikits-image.org Priority: optional Section: doc Filename: pool/main/s/skimage/python-skimage-doc_0.7.2-1~nd12.10+1_all.deb Size: 6578200 SHA256: a10af35a7f38140767c659a2402ddd97af358a2408b890320bc33ab40c4ed2c2 SHA1: 31e1208f75da7ed477f45682949fc1d938306663 MD5sum: 714339d017e3e05e32d4c702be97fdf0 Description: Documentation and examples for scikits-image This package contains documentation and example scripts for python-skimage. Package: python-sklearn Source: scikit-learn Version: 0.13-2~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3034 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-numpy, python-scipy, python-sklearn-lib (>= 0.13-2~nd12.10+1) Recommends: python-nose, python-matplotlib, python-joblib (>= 0.4.5) Suggests: python-dap, python-scikits-optimization, python-sklearn-doc, ipython Enhances: python-mdp, python-mvpa2 Breaks: python-scikits-learn (<< 0.9~) Replaces: python-scikits-learn (<< 0.9~) Provides: python2.7-sklearn Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: python Filename: pool/main/s/scikit-learn/python-sklearn_0.13-2~nd12.10+1_all.deb Size: 1007446 SHA256: 8723b37dc521e9a2c92346dd6899bd7ff1f61e2d11598cd456d9823728506059 SHA1: 58e221af408877de9b5e5b7f6e490cb8ec7c05c4 MD5sum: dab964ac53460bbaa7632e5f7787108d Description: Python modules for machine learning and data mining scikit-learn is a collection of Python modules relevant to machine/statistical learning and data mining. Non-exhaustive list of included functionality: - Gaussian Mixture Models - Manifold learning - kNN - SVM (via LIBSVM) Python-Version: 2.7 Package: python-sklearn-doc Source: scikit-learn Version: 0.13-2~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 42243 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-sklearn Conflicts: python-scikits-learn-doc Replaces: python-scikits-learn-doc Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: doc Filename: pool/main/s/scikit-learn/python-sklearn-doc_0.13-2~nd12.10+1_all.deb Size: 30776416 SHA256: 7737b9768d6b323c8e380cac3edb88e18ec059fcb838ee4119c4ca5b331b2819 SHA1: 45dcec7e5e1d6cc32c881b26747a54131b81f37a MD5sum: 6969df86d729cac2c273f0c3631fc985 Description: documentation and examples for scikit-learn This package contains documentation and example scripts for python-sklearn. Package: python-spykeutils Source: spykeutils Version: 0.2.1-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1392 Depends: neurodebian-popularity-contest, python2.7, python (>= 2.7.1-0ubuntu2), python (<< 2.8), python-scipy, python-quantities, python-neo (>= 0.2.1), python-nose, python-sphinx Recommends: python-guidata, python-guiqwt, python-tables, libjs-jquery, libjs-underscore, python-sklearn (>= 0.11), python-joblib (>= 0.4.5) Provides: python2.7-spykeutils Homepage: https://github.com/rproepp/spykeutils Priority: extra Section: python Filename: pool/main/s/spykeutils/python-spykeutils_0.2.1-1~nd12.10+1_all.deb Size: 324020 SHA256: 7dc79235cb23e644a16c2c2982663c9879e2d3627f9b104a07b892dd5a3b9909 SHA1: f8de6e4621f3ebcea34625dc9c5f8498dcdb6069 MD5sum: 7e05e0a4963588d45abdbdda84f8e74b Description: utilities for analyzing electrophysiological data spykeutils is a Python library for analyzing and plotting data from neurophysiological recordings. It can be used by itself or in conjunction with Spyke Viewer, a multi-platform GUI application for navigating electrophysiological datasets. Package: python-surfer Source: pysurfer Version: 0.3+git15-gae6cbb1-1~nd12.04+1+nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 93 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-numpy, python-scipy, python-nibabel, python-imaging, mayavi2, python-argparse, ipython Recommends: mencoder Homepage: http://pysurfer.github.com Priority: extra Section: python Filename: pool/main/p/pysurfer/python-surfer_0.3+git15-gae6cbb1-1~nd12.04+1+nd12.10+1_all.deb Size: 28082 SHA256: 2a0d8f7bea7b8e7fbe80619282bcd1c0b6874fbc2569c3248451c752f1cdc4dc SHA1: 186db3b9114826618485059e3582945a132d76f5 MD5sum: 7cc577897180b73015b7f99b17c6d04f Description: visualize Freesurfer's data in Python This is a Python package for visualization and interaction with cortical surface representations of neuroimaging data from Freesurfer. It extends Mayavi’s powerful visualization engine with a high-level interface for working with MRI and MEG data. . PySurfer offers both a command-line interface designed to broadly replicate Freesurfer’s Tksurfer program as well as a Python library for writing scripts to efficiently explore complex datasets. Python-Version: 2.7 Package: python-tz Version: 2012c-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 114 Depends: neurodebian-popularity-contest, tzdata, python2.7, python (>= 2.7.1-0ubuntu2), python (<< 2.8) Homepage: http://pypi.python.org/pypi/pytz/ Priority: optional Section: python Filename: pool/main/p/python-tz/python-tz_2012c-1~nd12.10+1_all.deb Size: 39078 SHA256: e512dd91a25410d50f9579997ac91ad0112084db3472a4d52ecd2bd4294453d9 SHA1: c84153071fa6e5b7565e216b0312f0ce5c7e5806 MD5sum: ac19c9c5c33c317608e638b9a35d9a32 Description: Python version of the Olson timezone database python-tz brings the Olson tz database into Python. This library allows accurate and cross platform timezone calculations using Python 2.3 or higher. It also solves the issue of ambiguous times at the end of daylight savings, which you can read more about in the Python Library Reference (datetime.tzinfo). Package: python3-mdp Source: mdp Version: 3.3+git6-g7bbd889-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1457 Depends: neurodebian-popularity-contest, python3 (>= 3.2.3-3~), python3-numpy Homepage: http://mdp-toolkit.sourceforge.net/ Priority: optional Section: python Filename: pool/main/m/mdp/python3-mdp_3.3+git6-g7bbd889-1~nd12.10+1_all.deb Size: 472468 SHA256: 89e6aaa24e0466c077008ab49d9ee6f262e515e0fdc500f760852be9080d763a SHA1: c64c2e32bb873012649d600340e60dee84346879 MD5sum: f82a99a09536a7744d28e6d286e85450 Description: Modular toolkit for Data Processing Python data processing framework for building complex data processing software by combining widely used machine learning algorithms into pipelines and networks. Implemented algorithms include: Principal Component Analysis (PCA), Independent Component Analysis (ICA), Slow Feature Analysis (SFA), Independent Slow Feature Analysis (ISFA), Growing Neural Gas (GNG), Factor Analysis, Fisher Discriminant Analysis (FDA), and Gaussian Classifiers. . This package contains MDP for Python 3. Package: python3-pandas Source: pandas Version: 0.11.0-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4567 Depends: neurodebian-popularity-contest, python3 (>= 3.2.3-3~), python3-dateutil, python3-tz, python3-numpy (>= 1:1.6~), python3-pandas-lib (>= 0.11.0-1~nd12.10+1) Recommends: python3-scipy, python3-matplotlib, python3-tables Suggests: python-pandas-doc Homepage: http://pandas.sourceforge.net Priority: optional Section: python Filename: pool/main/p/pandas/python3-pandas_0.11.0-1~nd12.10+1_all.deb Size: 943382 SHA256: ac9d1772ae575b0feab0557b08aac67272c00c76b0310f5627836aa46d21268c SHA1: 72b9a4bde9564f2fe80cc15b6c94d0172aa4d5c2 MD5sum: 162db89d3a40a4028f4d47d1ae9fa7b2 Description: data structures for "relational" or "labeled" data - Python 3 pandas is a Python package providing fast, flexible, and expressive data structures designed to make working with "relational" or "labeled" data both easy and intuitive. It aims to be the fundamental high-level building block for doing practical, real world data analysis in Python. pandas is well suited for many different kinds of data: . - Tabular data with heterogeneously-typed columns, as in an SQL table or Excel spreadsheet - Ordered and unordered (not necessarily fixed-frequency) time series data. - Arbitrary matrix data (homogeneously typed or heterogeneous) with row and column labels - Any other form of observational / statistical data sets. The data actually need not be labeled at all to be placed into a pandas data structure . This package contains the Python 3 version. Package: python3-tz Source: python-tz Version: 2012c-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 107 Depends: neurodebian-popularity-contest, tzdata, python3 (>= 3.2.3-3~) Homepage: http://pypi.python.org/pypi/pytz/ Priority: optional Section: python Filename: pool/main/p/python-tz/python3-tz_2012c-1~nd12.10+1_all.deb Size: 31094 SHA256: 541debafe90874ce85aa69a2e53d7ada2801158b6f51a6d77c5b53e1555133d5 SHA1: 97f75a58b3b9eecf005f3978a69ec811f3d14c1d MD5sum: bc8c7ae5fb1cfdcc84fd641c71adbdbb Description: Python3 version of the Olson timezone database python-tz brings the Olson tz database into Python. This library allows accurate and cross platform timezone calculations using Python 2.3 or higher. It also solves the issue of ambiguous times at the end of daylight savings, which you can read more about in the Python Library Reference (datetime.tzinfo). . This package contains the Python 3 version of the library. Package: spm8-common Source: spm8 Version: 8.5236~dfsg.1-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 18626 Depends: neurodebian-popularity-contest Recommends: spm8-data, spm8-doc Priority: extra Section: science Filename: pool/main/s/spm8/spm8-common_8.5236~dfsg.1-1~nd12.10+1_all.deb Size: 10739142 SHA256: 9c07d393b038418f4e4a763e102f3b02018fd0e52aac7356912911b3d92be424 SHA1: 98d45be6ebbf81448758f3b8c5e0420c845db0a4 MD5sum: de77f38be5e04af49e0e01c3cdb186f3 Description: analysis of brain imaging data sequences Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provides the platform-independent M-files. Package: spm8-data Source: spm8 Version: 8.5236~dfsg.1-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 73046 Depends: neurodebian-popularity-contest Priority: extra Section: science Filename: pool/main/s/spm8/spm8-data_8.5236~dfsg.1-1~nd12.10+1_all.deb Size: 52166040 SHA256: 15cf207c9cb8767759256119203b890d3927a35e1386c575d97d7c5e1e050100 SHA1: 67fa3daa1f542fdb0129c6641fd94e4761425684 MD5sum: 05fa87de1ddbc8f05bab311ad33b2645 Description: data files for SPM8 Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provide the data files shipped with the SPM distribution, such as various stereotaxic brain space templates and EEG channel setups. Package: spm8-doc Source: spm8 Version: 8.5236~dfsg.1-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 9273 Depends: neurodebian-popularity-contest Priority: extra Section: doc Filename: pool/main/s/spm8/spm8-doc_8.5236~dfsg.1-1~nd12.10+1_all.deb Size: 8991192 SHA256: 1b52462aa5d8bdb5add60ea7404d9832ad60fddf0cd83dd4ca5a81bf428ba9bc SHA1: a520b1f65fbcc15468095112f9ad1307f7da1275 MD5sum: bd7595025796fc9c3737b1263a4aa7f3 Description: manual for SPM8 Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provides the SPM manual in PDF format. Package: spykeviewer Version: 0.2.1-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 847 Depends: neurodebian-popularity-contest, python2.7, python (>= 2.7.1-0ubuntu2), python (<< 2.8), python-guidata, python-guiqwt (>= 2.1.4), python-spyderlib, python-spykeutils (>= 0.2.1), python-neo (>= 0.2.1), python-matplotlib, python-nose, python-scipy, python-sphinx, python-tables Recommends: libjs-jquery, libjs-underscore, ipython-qtconsole (>= 0.12) Homepage: http://www.ni.tu-berlin.de/software/spykeviewer Priority: extra Section: python Filename: pool/main/s/spykeviewer/spykeviewer_0.2.1-1~nd12.10+1_all.deb Size: 463176 SHA256: 71495e7b374bfc4b95ffc47714065630564e5f51b5d70874de94ff1ea7b2463a SHA1: 9c9f3bf7d14a5de441a4cfda7e829f1782232321 MD5sum: 24223e808c63658416dc42e896f30128 Description: graphical utility for analyzing electrophysiological data Spyke Viewer is a multi-platform GUI application for navigating, analyzing and visualizing electrophysiological datasets. Based on the Neo framework, it works with a wide variety of data formats. Spyke Viewer includes an integrated Python console and a plugin system for custom analyses and plots. Package: stabilitycalc Version: 0.1-1~nd11.04+1+nd11.10+1+nd12.04+1+nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 119 Depends: neurodebian-popularity-contest, python, python-support (>= 0.90.0), python-numpy, python-matplotlib, python-scipy, python-nifti Recommends: python-dicom Homepage: https://github.com/bbfrederick/stabilitycalc Priority: extra Section: science Filename: pool/main/s/stabilitycalc/stabilitycalc_0.1-1~nd11.04+1+nd11.10+1+nd12.04+1+nd12.10+1_all.deb Size: 28774 SHA256: 49039b7b76aa244e4ab34fb04efe43f167aa10e762799ff318276089bf7c2acf SHA1: f2a5e4c70779898ef2164710d40febc1320a6116 MD5sum: 03a808a4acccdd5a48c6b8d10f8b96e5 Description: evaluate fMRI scanner stability Command-line tools to calculate numerous fMRI scanner stability metrics, based on the FBIRN quality assurance test protocal. Any 4D volumetric timeseries image in NIfTI format is support input. Output is a rich HTML report. Python-Version: 2.7 Package: testkraut Version: 0.0.1-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 358 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-numpy, libjs-underscore, libjs-jquery, python-argparse Recommends: strace, python-scipy, python-colorama, python-apt Homepage: https://github.com/neurodebian/testkraut Priority: extra Section: python Filename: pool/main/t/testkraut/testkraut_0.0.1-1~nd12.10+1_all.deb Size: 102648 SHA256: ea9a0dc6202062ce41b66a99c7636103bbfa784f108edb7e3a3a0ca6eee285bb SHA1: a2ebf2e13a47bb725d76a53f880fb5ca9d4e8abd MD5sum: 375ecec2bf2a9be209520da130d2c74e Description: test and evaluate heterogeneous data processing pipelines This is a framework for software testing. That being said, testkraut tries to minimize the overlap with the scopes of unit testing, regression testing, and continuous integration testing. Instead, it aims to complement these kinds of testing, and is able to re-use them, or can be integrated with them. . In a nutshell testkraut helps to facilitate statistical analysis of test results. In particular, it focuses on two main scenarios: . * Comparing results of a single (test) implementation across different or changing computational environments (think: different operating systems, different hardware, or the same machine before an after a software upgrade). * Comparing results of different (test) implementations generating similar output from identical input (think: performance of various signal detection algorithms). . While such things can be done using other available tools as well, testkraut aims to provide a lightweight, yet comprehensive description of a test run. Such a description allows for decoupling test result generation and analysis – opening up the opportunity to “crowd-source” software testing efforts, and aggregate results beyond the scope of a single project, lab, company, or site. Python-Version: 2.7 Package: vowpal-wabbit-doc Source: vowpal-wabbit Version: 7.2-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 70918 Depends: neurodebian-popularity-contest Recommends: vowpal-wabbit Homepage: http://hunch.net/~vw/ Priority: optional Section: doc Filename: pool/main/v/vowpal-wabbit/vowpal-wabbit-doc_7.2-1~nd12.10+1_all.deb Size: 50202274 SHA256: 394a2687554b3e8c2dd575d821ceba889487dcffecf3a81db28f6e7b91d7c2dc SHA1: 294f282a3bb80fd4b35ebd8e8bb8a51a7b176182 MD5sum: 0cf2ef4740dbed5a31ea7522941e4962 Description: fast and scalable online machine learning algorithm - documentation Vowpal Wabbit is a fast online machine learning algorithm. The core algorithm is specialist gradient descent (GD) on a loss function (several are available). VW features: - flexible input data specification - speedy learning - scalability (bounded memory footprint, suitable for distributed computation) - feature pairing . This package contains examples (tests) for vowpal-wabbit.