Package: fsl Version: 5.0.4-1~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 52 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.4-1~nd12.04+1_all.deb Size: 19590 SHA256: 76c5ca93d6efa61506f3660d877cffdb0eb4e9ba59bc50ada5d826b07a40a3e6 SHA1: 4259082c17c1673a1bd1a23591943b8b714ddf62 MD5sum: 8bc21cba53bc40a0959c5df84ac8100b Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-core' package which replaces 'fsl'. It can safely be removed. Package: fsl-4.1 Source: fsl Version: 4.1.9-6~nd12.04+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 26520 Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4), mozilla-firefox | www-browser, tcsh | c-shell, tk8.4 (>= 8.4.7), tcl8.4 (>= 8.4.7), bc, dc Recommends: fsl-doc-4.1 (= 4.1.9-6~nd12.04+1), fsl-atlases, fslview Suggests: fsl-feeds, octave | octave3.2 (>= 3.2.4), dicomnifti, fsl-possum-data, fsl-first-data, gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-4.1_4.1.9-6~nd12.04+1_amd64.deb Size: 10146516 SHA256: 0e4078a6e64418223c6a35b72377ff985962c73ba53e8a36aeda50d1a93fb54d SHA1: 0c72aee0a310efc864e979e91a6815fd2f468ee4 MD5sum: 0d2ce9c4df99c5065921265d89754061 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0 Source: fsl Version: 5.0.4-1~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 49 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.4-1~nd12.04+1_all.deb Size: 18132 SHA256: 62be7886ce14ff284545406d7062ab5dad2626ba8fb549a804e9a350caf7565d SHA1: 453c782a5a3047228a499856d495600662628e1c MD5sum: 3b9655e55f5929fe8a6bef8b9c40f798 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-core' package which replaces 'fsl-5.0'. It can safely be removed. Package: fsl-5.0-core Source: fsl Version: 5.0.4-1~nd12.04+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 36309 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk8.4 (>= 8.4.7), tcl8.4 (>= 8.4.7), bc, dc, python, libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgomp1 (>= 4.2.1), libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4) Recommends: fsl-5.0-doc (= 5.0.4-1~nd12.04+1), fsl-atlases, fslview Suggests: fsl-feeds, octave | octave3.2 (>= 3.2.4), mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.4-1~nd12.04+1_amd64.deb Size: 14113420 SHA256: 5184897a316ea5a3b6078e0ef0516de8aeb512f0f3c903774cf13a66879acead SHA1: 2db62a99ee059ce476b4f293de2f439eb60ff072 MD5sum: f8475f799bb43ca2e3836da080f1c4c5 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-doc Source: fsl Version: 5.0.4-1~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 23722 Recommends: fslview-doc Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.4-1~nd12.04+1_all.deb Size: 18708378 SHA256: 6b81a77a2c5f48d44113d86a39e66fef28a94ad9e096692f696ca4ce3cb02e4e SHA1: fa860af1567ae39e45e69dd7b1bf4820946139c4 MD5sum: 53c9c0470f0e689dc6787723a535f800 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-core Source: fsl Version: 5.0.4-1~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 67 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.4-1~nd12.04+1_all.deb Size: 19368 SHA256: 57a7aa6425077d585a3a4caefdb4fba4ea78503cd41ec2cbf10fc6276910bc2e SHA1: 2ccd6da06ce01b80cc800ad5f68a9562d637e9cb MD5sum: 72b75c60fe25d8c519f108824082199e Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. Package: fsl-doc-4.1 Source: fsl Version: 4.1.9-6~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 17495 Recommends: fslview-doc Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-doc-4.1_4.1.9-6~nd12.04+1_all.deb Size: 11202278 SHA256: e6c1b8831beabc35ace88708b3ce183f6170f49c2488f5a4811630d732eb3a22 SHA1: aba43e80be1c70c679effa0fda5b7e6d0ee13be0 MD5sum: e7d508aa59beaa3f40c384c64483c662 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-doc-5.0 Source: fsl Version: 5.0.4-1~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 49 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.4-1~nd12.04+1_all.deb Size: 18140 SHA256: 376c5d0d25dc86f901e507ac91a204bac18d773c07833b76ba25222ccc64775f SHA1: b6325abbf0630f4c12b7b0335f0fcf7536c8bc82 MD5sum: 6569b93a9486a7c99f7d68959826ad44 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. It can safely be removed. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.10.20130612-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.10.20130612-1~nd+1), psychtoolbox-3-common (>= 3.0.10.20130612-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.10.20130612-1~nd+1_all.deb Size: 3614 SHA256: 27ce1297df5573b4cb68dd877ea90af08cab3db4abe9be6c670cabe502feac44 SHA1: a3d0080372d24e2d5a4e0566a3b952ac8dbd283d MD5sum: 96319f1bf71e9356f4a4db107ba15bb2 Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.10.20130612-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 4111 Depends: neurodebian-popularity-contest, psychtoolbox-3-lib (>= 3.0.10.20130612-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.10.20130612-1~nd+1.dfsg) Recommends: freeglut3, libasound2, libdc1394-22, libfreenect0.1, libgl1-mesa-glx, libglib2.0-0, libglu1-mesa, libgstreamer-plugins-base0.10-0, libgstreamer0.10-0, libopenal1, libpciaccess0, libusb-1.0-0, libx11-6, libxext6, libxfixes3, libxi6, libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.10.20130612-1~nd+1_amd64.deb Size: 1342906 SHA256: 8e945bdf378aa37b85ddbf78f3c7d5ee367f19c29fd47b073e4d050c94b9fa98 SHA1: bee27663c307bb465f926e677c61e43179edda35 MD5sum: c7a1c09b9b45dd638e3c20402dae2c88 Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.10.20130612-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 1299 Depends: neurodebian-popularity-contest, octave-psychtoolbox-3 (>= 3.0.10.20130612-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.10.20130612-1~nd+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.10.20130612-1~nd+1_amd64.deb Size: 429466 SHA256: 15a4c896f08329585dfdcad7a94055015b502c977343cb7a6eb49ecb40a73fb0 SHA1: 951877ff50636198c74c781d45f47d777562e0cc MD5sum: 4e5b3d6d0421965dc3aa5eeb6e79a0ca Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3063 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd12.04+1_all.deb Size: 2051876 SHA256: c6ddd49fdaa533afcb03f492ce010cc8e37273a791beed44ff4db4e7953d0ce3 SHA1: dcd7ee76a6604d8997b2cbc066997d15dca17d31 MD5sum: 31eda233bb479d3d21349372e66807b7 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.