Package: fsl Version: 5.0.4-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 64 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.4-1~nd60+1_all.deb Size: 19596 SHA256: 3abc702d8c79880355a3c5dbb81fa9566317df0a53b78dd0402d0b8d1011eac2 SHA1: 9d3a488e46a89693ac837581e90e8979739398a7 MD5sum: ae304a3e2f86dee4885abc9cc2afa4ba Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-core' package which replaces 'fsl'. It can safely be removed. Package: fsl-4.1 Source: fsl Version: 4.1.9-6~nd60+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 27136 Depends: libc6 (>= 2.7), libgcc1 (>= 1:4.1.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4), mozilla-firefox | www-browser, tcsh | c-shell, tk8.4 (>= 8.4.7), tcl8.4 (>= 8.4.7), bc, dc Recommends: fsl-doc-4.1 (= 4.1.9-6~nd60+1), fsl-atlases, fslview Suggests: fsl-feeds, octave | octave3.2 (>= 3.2.4), dicomnifti, fsl-possum-data, fsl-first-data, gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-4.1_4.1.9-6~nd60+1_i386.deb Size: 10191236 SHA256: a83b986d68da464839fe57fa2424d4df444bfc781b9ffc07321ee0d84f55554f SHA1: 2cad649766ca89d863b07c1b52df943b0d58ee9a MD5sum: 4ad1c35dd19ba2a0746072696937d3c6 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0 Source: fsl Version: 5.0.4-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 56 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.4-1~nd60+1_all.deb Size: 18118 SHA256: 155c38b7d16883a0f71cc27e99c6060f21a08aa48fb998feeb89ca8afa3264bc SHA1: 82c7946b796e3d78b30822fee2fdf697c6e5ab5e MD5sum: a10d4e7ff6f92bbbb679d52a0b850e64 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-core' package which replaces 'fsl-5.0'. It can safely be removed. Package: fsl-5.0-core Source: fsl Version: 5.0.4-1~nd60+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 37568 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk8.4 (>= 8.4.7), tcl8.4 (>= 8.4.7), bc, dc, python, libc6 (>= 2.7), libexpat1 (>= 1.95.8), libgcc1 (>= 1:4.1.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libgomp1 (>= 4.2.1), libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4) Recommends: fsl-5.0-doc (= 5.0.4-1~nd60+1), fsl-atlases, fslview Suggests: fsl-feeds, octave | octave3.2 (>= 3.2.4), mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.4-1~nd60+1_i386.deb Size: 14249350 SHA256: a3c21a491f69d8340b5b61c3ffe7a38627b984f38a868bf1747197d20c9a18d9 SHA1: d34dac09845e2966d2ea62f28c6bb320cfd9df3a MD5sum: 250431ffaad32841c3c70458387b1ef3 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-doc Source: fsl Version: 5.0.4-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 25208 Recommends: fslview-doc Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.4-1~nd60+1_all.deb Size: 18708354 SHA256: 99cf1f998cca69f62f1b6cadb4003a6f9d204d3c39191b1c393946c01430b623 SHA1: 0c3e0455d1660ae26c65e1a9a80f03a5a3fe16be MD5sum: 55366ee6a1a2fdbf8d13c0bc57048ee7 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-core Source: fsl Version: 5.0.4-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 76 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.4-1~nd60+1_all.deb Size: 19354 SHA256: a488fa4e3101cc6fae72caed5a66dba4031ef88021d116f1c6b02b98826e9a42 SHA1: 8fe6b76e23af7ca7624dfb9f22ce597725137721 MD5sum: ad788087f3b3a9a0b8706eaabb8e057f Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. Package: fsl-doc Source: fsl Version: 4.1.6-1~squeeze.nd1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 18356 Depends: fslview-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-doc_4.1.6-1~squeeze.nd1_all.deb Size: 11171278 SHA256: 9b33f8e5f15c9d4dd1a4f4c991ac3342494dc889fc6b8f355ca29084e9ea2d01 SHA1: c42a214ed78ff3bd00816cdcc84688d8b754ae03 MD5sum: 9a101564891e9bda59ff6442df69a148 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various commandline tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-doc-4.1 Source: fsl Version: 4.1.9-6~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 18088 Recommends: fslview-doc Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-doc-4.1_4.1.9-6~nd60+1_all.deb Size: 11202302 SHA256: ae4d30edf665fa787ffee70fad7919517e6b8f7a87bf8c6f1bde72fc4afa4175 SHA1: a12ca1ce9985bc9f9cc238517b42733a9bf8fc52 MD5sum: ea31f0993274a0b1edf4b9362ec50bc4 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-doc-5.0 Source: fsl Version: 5.0.4-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 56 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.4-1~nd60+1_all.deb Size: 18120 SHA256: 4f57c6c75ec61610a2af8ad621403dee7a07d28db224ceb7e72cb5d092febd2b SHA1: 794bb8a3420056b0c5e4e5f80ddb258b672e5022 MD5sum: f0c69fbc3aa90add614068b5c9f08f91 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. It can safely be removed. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.11.20130711-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.11.20130711-1~nd+1), psychtoolbox-3-common (>= 3.0.11.20130711-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.11.20130711-1~nd+1_all.deb Size: 3724 SHA256: 0abb53d18cbe1b94b378131bb08bb51c9ea6e7522120f91a63a8bed074710a4b SHA1: 63a9aeb70b9c3fb2466d1c57273f92b2327b63de MD5sum: c91e0cbc60dfb60ac8785e2c5a80023d Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20130711-1~nd+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 4051 Depends: neurodebian-popularity-contest, psychtoolbox-3-lib (>= 3.0.11.20130711-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20130711-1~nd+1.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libglew1.9, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libgstreamer-plugins-base0.10-0, libgstreamer0.10-0, libopenal1, libpciaccess0, libusb-1.0-0, libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.11.20130711-1~nd+1_i386.deb Size: 1365460 SHA256: f11d305896d4710023bddc22f632d30ea99faa28d4eecb780c3f6ae32dbe5075 SHA1: f3c3471238e6d4b3cfb1a323b6c74bd4fb8dc584 MD5sum: 146230187a5d8d2e51d8ea7b5cfda550 Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: mipav Version: 5.0.0.20100907-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 116 Pre-Depends: debconf (>= 0.5) | debconf-2.0 Depends: openjdk-6-jre | java6-runtime, libjogl-java, libjava3d-java, wget Homepage: http://mipav.cit.nih.gov/ Priority: extra Section: non-free/science Filename: pool/non-free/m/mipav/mipav_5.0.0.20100907-2_all.deb Size: 15272 SHA256: e5979bf557f27455dfe58a2244dbc066f0d5c276ab85cad013fbacc5ab303d60 SHA1: 61e581b87f680c0dbcce05e45ef290c4133fac55 MD5sum: 44ab2224b485d68657f13ac87d35c605 Description: quantitative analysis and visualization of medical images The MIPAV (Medical Image Processing, Analysis, and Visualization) application enables quantitative analysis and visualization of medical images of numerous modalities such as PET, MRI, CT, or microscopy. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites can easily share research data and analyses, thereby enhancing their ability to research, diagnose, monitor, and treat medical disorders. MIPAV provides an interface for plug-ins and serves as the foundation for other projects (e.g. JIST). . This package provides downloader/installer for non-redistributable closed-source version of MIPAV and a convenience startup wrapper. You will have a choice of reviewing the license and accepting or declining it upon installation. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20130711-1~nd+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 1131 Depends: neurodebian-popularity-contest, octave-psychtoolbox-3 (>= 3.0.11.20130711-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20130711-1~nd+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.11.20130711-1~nd+1_i386.deb Size: 408514 SHA256: 09dc096fd9d70125c2a896bb624f48950f60ee17f70e4a7c6a6eb2d82190099b SHA1: e7f8f2b3a082b9431142b6649cacd1ff0c40ce1a MD5sum: 2f82540e38e108893967f6fafc2a247e Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3100 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd60+1_all.deb Size: 2051874 SHA256: 533b108360fc7cf5900c9f3321d10b60bd313b8f3eb8adc0c8790516bd5dccad SHA1: d402c13347e46ffcf4665dc8f8f55a2f6fd608d3 MD5sum: 33768b34f92fa3cb19af8ba144c92adb Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.