Package: fsl Version: 5.0.4-1~nd10.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 64 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.4-1~nd10.04+1_all.deb Size: 19580 SHA256: 25f230a8abc35c9d572350afc2aa6cb957f64560853621e1ca2727dc499ecd1c SHA1: 9113afef6ec11a62fef740d1a602d8d2ff14e63e MD5sum: 44f46e4f5be14c1cbff4b4923266e361 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-core' package which replaces 'fsl'. It can safely be removed. Package: fsl-5.0 Source: fsl Version: 5.0.4-1~nd10.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 56 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.4-1~nd10.04+1_all.deb Size: 18120 SHA256: e4066b28096c6e4fe5499b8f17efce0c60966ceb44682cf07ea49998e382873e SHA1: aef9c8f75e6ddc19edf62bf0ad64a5bd96072f55 MD5sum: 7ed0d46f42126a224b16fafbbc06e50b Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-core' package which replaces 'fsl-5.0'. It can safely be removed. Package: fsl-5.0-doc Source: fsl Version: 5.0.4-1~nd10.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 25208 Recommends: fslview-doc Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.4-1~nd10.04+1_all.deb Size: 18708590 SHA256: 3731bb5bd0350d8a804a862248174eb92b9de984db0a317996fd296427df53b9 SHA1: 0b16b48be012ffc89d6def75393dc771ede2fd6a MD5sum: d8e636015d9025e9a570985bac1f51f7 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-core Source: fsl Version: 5.0.4-1~nd10.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 76 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.4-1~nd10.04+1_all.deb Size: 19364 SHA256: b2e446a7279e27cdaeb75d741251eb7144115cd010c1b1516c112aa5a6faa75b SHA1: 08c46eb5a7111fd1ed59af0c2397b60b62ede45d MD5sum: 21035c73f033b4f92e57adcc8ae1c1a2 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. Package: fsl-doc-4.1 Source: fsl Version: 4.1.9-6~nd10.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 18088 Recommends: fslview-doc Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-doc-4.1_4.1.9-6~nd10.04+1_all.deb Size: 11202270 SHA256: c7fd66d0cfef4a3993bf077364fa1687b321bbff0ce09cc6106d0c5846f94833 SHA1: 7dabe50877c5e0c30e86cd53f88fe9412525e06c MD5sum: 41c77eb4be8a7c90e6966f65ce174cdb Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-doc-5.0 Source: fsl Version: 5.0.4-1~nd10.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 56 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.4-1~nd10.04+1_all.deb Size: 18128 SHA256: ae4417abf811a63d6fd9788e52157ad6b8d5581683cc56faefe6bc1d03fbf015 SHA1: 336c926fe3500f04e8e9065140a1edd8f9c52e38 MD5sum: c143192c0d42dbc6ed16c14f7a3f74a2 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. It can safely be removed. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.11.20130711-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.11.20130711-1~nd+1), psychtoolbox-3-common (>= 3.0.11.20130711-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.11.20130711-1~nd+1_all.deb Size: 3724 SHA256: 0abb53d18cbe1b94b378131bb08bb51c9ea6e7522120f91a63a8bed074710a4b SHA1: 63a9aeb70b9c3fb2466d1c57273f92b2327b63de MD5sum: c91e0cbc60dfb60ac8785e2c5a80023d Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd10.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3100 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd10.04+1_all.deb Size: 2051874 SHA256: a5d2b81b24c496c03684df81b5e8a4a64707fe44c2d0bbe56a5b0799838563b6 SHA1: 0852715010f14f84c547a02b52cf32a640086ada MD5sum: 7c33b4e140106d10f264d4895bc38dd1 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.