Package: afni Version: 0.20130830~dfsg.1-1~nd60+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 32440 Depends: neurodebian-popularity-contest, afni-common (= 0.20130830~dfsg.1-1~nd60+1), tcsh, gifsicle, libjpeg-progs, freeglut3, libc6 (>= 2.11), libf2c2, libgiftiio0, libgl1-mesa-glx | libgl1, libglib2.0-0 (>= 2.12.0), libglu1-mesa | libglu1, libglw1-mesa | libglw1, libgomp1 (>= 4.2.1), libgsl0ldbl (>= 1.9), libgts-0.7-5 (>= 0.7.6), libice6 (>= 1:1.0.0), libjpeg62 (>= 6b1), libmotif4, libnetcdf6, libnifti2, libsm6, libvolpack1, libx11-6, libxext6, libxi6, libxmu6, libxt6, xmhtml1 Recommends: nifti-bin, bzip2, ffmpeg, netpbm, qhull-bin Suggests: r-base Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni_0.20130830~dfsg.1-1~nd60+1_i386.deb Size: 12072270 SHA256: d523c82c261476cf941a735f8f25a97cc84afb3841cdce780c434d253b9d0f83 SHA1: e8c44f18ed1322d78345d003b4dcba196bd5ada3 MD5sum: 5a3f8f6f771f207730f7f5ceb76c0208 Description: toolkit for analyzing and visualizing functional MRI data AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . In addition to its own format, AFNI understands the NIfTI format and is therefore integrates easily with FSL and FreeSurfer. Package: afni-common Source: afni Version: 0.20130830~dfsg.1-1~nd60+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 12020 Depends: neurodebian-popularity-contest, python, tcsh, afni-atlases Recommends: python-mdp, python-nibabel Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-common_0.20130830~dfsg.1-1~nd60+1_all.deb Size: 6438430 SHA256: afbc5e14cda756282fea9611a59b78f8860d645196eae5d57d8117adc4f4f188 SHA1: 42fd83b08541ca47c45e448fbc975b03bd69e5cb MD5sum: 9b457b7371cb5bc693427160442848c5 Description: miscellaneous scripts and data files for AFNI AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides the required architecture independent parts of AFNI. Package: afni-dbg Source: afni Version: 0.20130830~dfsg.1-1~nd60+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 38528 Depends: neurodebian-popularity-contest Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-dbg_0.20130830~dfsg.1-1~nd60+1_i386.deb Size: 16814718 SHA256: 4eb2b56d5233a16687cd54de44ed379faee1d2aa73f065f9f8378eda95d387ec SHA1: 13c23942a02182c89144ec28fcad8d25abb3da8e MD5sum: f49587c2e807ed3baad0c90a823203c8 Description: debug symbols for AFNI AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides debug symbols which could be useful to troubleshoot and report problems with AFNI. Package: afni-dev Source: afni Version: 0.20130830~dfsg.1-1~nd60+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 13920 Depends: neurodebian-popularity-contest Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-dev_0.20130830~dfsg.1-1~nd60+1_i386.deb Size: 4060522 SHA256: de2e8d8e3cc723a1f4b7c8ff4c5175f50664a8e80a831be641581bad937566a2 SHA1: 42374972aa43e6d56b74bddc58424fb99a9646c5 MD5sum: ae1e1df34f8f7bf5c3ea67a3558360fb Description: header and static libraries for AFNI plugin development AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides the necessary libraries and header files for AFNI plugin development. Package: fsl-5.0-complete Source: fslmeta Version: 5.0.4-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 32 Depends: fsl-5.0-core (>= 5.0.4-1~nd60+1~), fsl-5.0-doc (>= 5.0.4-1~nd60+1~), fsl-atlases (>= 5.0~), fslview, fsl-possum-data (>= 5.0~), fsl-first-data (>= 5.0~) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: contrib/science Filename: pool/contrib/f/fslmeta/fsl-5.0-complete_5.0.4-1~nd60+1_all.deb Size: 2500 SHA256: be63d3601335391a8c48bb83cfd8e5c0f5bb67129c0d2d1cc27da453b2fe9b9f SHA1: 53dba1af91dd23bb38a0ee43a6588b341cc43e11 MD5sum: 232b491100e19a401c459733fd56ecaa Description: metapackage for the entire FSL suite (tools and data) FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Installing this meta package yields a complete FSL 5.0 installation, including all tools and data packages. Package: fsl-complete Source: fslmeta Version: 5.0.4-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 32 Depends: fsl-5.0-complete Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: contrib/science Filename: pool/contrib/f/fslmeta/fsl-complete_5.0.4-1~nd60+1_all.deb Size: 2460 SHA256: f11aa2b7fb7c6d7fb86e1ef9c03c55bbb48131bc38ca06b45add343d39daf820 SHA1: 6172cf77eb6c60cd7828b9251e5505340a827369 MD5sum: 57e3fa88def150c19c1a4806883c27b0 Description: metapackage for the entire FSL suite (tools and data) FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Installing this meta package yields a complete installation of the latest FSL version, including all tools and data packages. Package: jist Version: 2.0.20100907.dfsg1-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 40092 Depends: mipav, openjdk-6-jre | java6-runtime, libcommons-cli-java (>= 1.2), libdrmaa-java, libjgraph-java (>= 5.10.1.2), libxom-java (>= 1.2.1), libxpp3-java (>= 1.1.4c), libxstream-java (>= 1.3.1) Homepage: http://www.nitrc.org/projects/jist/ Priority: extra Section: contrib/science Filename: pool/contrib/j/jist/jist_2.0.20100907.dfsg1-1_all.deb Size: 9020652 SHA256: b4059b70c695e9caba46e8ea1cca6482819c740b2d91b56a569a11f6c7fc60ba SHA1: 1f898a03ea355a710e23cc79ff3b5d4c63295852 MD5sum: 800acee273ebe4a3bd78c49d32188556 Description: Java Image Science Toolkit Java Image Science Toolkit (JIST) provides a native Java-based imaging processing environment similar to the ITK/VTK paradigm. Initially developed as an extension to MIPAV (CIT, NIH, Bethesda, MD), the JIST processing infrastructure provides automated GUI generation for application plug-ins, graphical layout tools, and command line interfaces. Package: matlab-eeglab11 Source: eeglab11 Version: 11.0.0.0~b~dfsg.1-1~nd60+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 42416 Depends: neurodebian-popularity-contest, matlab-support Recommends: eeglab11-sampledata Priority: extra Section: contrib/science Filename: pool/contrib/e/eeglab11/matlab-eeglab11_11.0.0.0~b~dfsg.1-1~nd60+1_all.deb Size: 14149370 SHA256: 430d8f72b93a5356c66f21c50875fb8534f227c22eb580169d390bdfc78e8172 SHA1: 76977ca67306c8a7bc3c5ad1818eef01eb2f1e3e MD5sum: ca963faf8c248d59721150914ca6a7f0 Description: electrophysiological data analysis This is sofwware for processing continuous or event-related EEG or other physiological data. It is designed for use by both novice and expert users. In normal use, the EEGLAB graphic interface calls graphic functions via pop-up function windows. The EEGLAB history mechanism can save the resulting calls to disk for later incorporation into scripts. . This package provides EEGLAB to be used with Matlab. Note that this package depends on Matlab -- a commercial software that needs to be obtained and installed separately. Package: matlab-gdf Source: libgdf Version: 0.1.2-2~nd60+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 164 Depends: neurodebian-popularity-contest, libgdf-dev (>= 0.1.2-2~nd60+1), matlab-support Homepage: http://sourceforge.net/projects/libgdf Priority: extra Section: contrib/science Filename: pool/contrib/libg/libgdf/matlab-gdf_0.1.2-2~nd60+1_all.deb Size: 23768 SHA256: d1889378944eb0f7e67c73ccd010a9c862e8eea93a87dac5affe49f1a4efd791 SHA1: 3f50bffb67a10f6980a5f16f3300a8a21ce7ae1d MD5sum: cea8fb406f7ceb37f8bfc26bdda99b96 Description: IO library for the GDF -- Matlab interface GDF (General Dataformat for Biosignals) is intended to provide a generic storage for biosignals, such as EEG, ECG, MEG etc. . This package builds Matlab bindings for GDF at installation time. Note that this package depends on Matlab -- a commercial software that needs to be obtain and installed separately. Package: matlab-spm8 Source: spm8 Version: 8.5236~dfsg.1-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1464 Depends: neurodebian-popularity-contest, matlab-support, spm8-common (= 8.5236~dfsg.1-1~nd60+1), make Provides: spm, spm8 Priority: extra Section: contrib/science Filename: pool/contrib/s/spm8/matlab-spm8_8.5236~dfsg.1-1~nd60+1_all.deb Size: 233036 SHA256: d15d493aa74315abaae9237b32b62fa88096f1def287513492070e143df4477c SHA1: 4915e045768f9e4632487c7f60648e37c99715d0 MD5sum: 345fc898a46475ae8e647baf20c64ab6 Description: analysis of brain imaging data sequences for Matlab Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provides SPM to be used with Matlab. Note that this package depends on Matlab -- a commercial software that needs to be obtained and installed separately. Package: matlab-support Version: 0.0.19~nd60+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 96 Depends: neurodebian-popularity-contest, debconf (>= 1.3.22) | cdebconf (>= 0.43), debconf (>= 0.5) | debconf-2.0, libxp6, sudo Recommends: libstdc++6-4.4-dev | libstdc++-dev Conflicts: matlab (<= 0.0.14~) Replaces: matlab (<= 0.0.14~) Priority: optional Section: contrib/devel Filename: pool/contrib/m/matlab-support/matlab-support_0.0.19~nd60+1_all.deb Size: 31816 SHA256: af39d54054b21a396b1698aaef6b3a14310afa4a75918e2e85c449e5cda4b8f7 SHA1: f225c185a4916280e3c1e8c7ab27a100eef34653 MD5sum: b8ba597c21c3020fdd95da3a595f1d02 Description: distro integration for local MATLAB installations This package does not provide MATLAB. Instead, it configures an existing MATLAB installation to integrate more comfortably in a Debian installation. . Currently it provides /usr/bin/matlab through the alternatives system, offers to work around incompatibilities between the libraries bundled with MATLAB and system libraries, and provides a helper utility meant to be used by other packages to compile MEX extensions. . Install this if you would like your MATLAB installation to behave more like an ordinary Debian package. Other packages may depend on this one if they install MATLAB code, for example in order to compile MEX extensions.