Package: afni Version: 0.20130903~dfsg.1-1~nd60+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 34708 Depends: neurodebian-popularity-contest, afni-common (= 0.20130903~dfsg.1-1~nd60+1), tcsh, gifsicle, libjpeg-progs, freeglut3, libc6 (>= 2.11), libf2c2, libgiftiio0, libgl1-mesa-glx | libgl1, libglib2.0-0 (>= 2.12.0), libglu1-mesa | libglu1, libglw1-mesa | libglw1, libgomp1 (>= 4.2.1), libgsl0ldbl (>= 1.9), libgts-0.7-5 (>= 0.7.6), libice6 (>= 1:1.0.0), libmotif4, libnetcdf6, libnifti2, libsm6, libvolpack1, libx11-6, libxext6, libxmu6, libxt6, xmhtml1, zlib1g (>= 1:1.1.4) Recommends: nifti-bin, bzip2, ffmpeg, netpbm, qhull-bin Suggests: r-base Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni_0.20130903~dfsg.1-1~nd60+1_amd64.deb Size: 13863048 SHA256: 2bafe2b3a975ca7fc37b39558f45dfd68b56285bcd3b19b547524cfa18cc4cb6 SHA1: a08dc0483ce3c56cc5e1ef148c942302be7f6247 MD5sum: 1808a007a6b41fe7d8e746ff27a4ec85 Description: toolkit for analyzing and visualizing functional MRI data AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . In addition to its own format, AFNI understands the NIfTI format and is therefore integrates easily with FSL and FreeSurfer. Package: afni-common Source: afni Version: 0.20130903~dfsg.1-1~nd60+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 12020 Depends: neurodebian-popularity-contest, python, tcsh Recommends: python-mdp, python-nibabel, afni-atlases Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-common_0.20130903~dfsg.1-1~nd60+1_all.deb Size: 6439270 SHA256: db67f5813bf3d5d64075b60b300b07e0f12949e2db88e58879451447d45fb6bc SHA1: 30613c605a2a1a507b9f8f74e558a9a93d7173d6 MD5sum: f1dcc1e68396e495572999a5375f2ac7 Description: miscellaneous scripts and data files for AFNI AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides the required architecture independent parts of AFNI. Package: afni-dbg Source: afni Version: 0.20130903~dfsg.1-1~nd60+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 49464 Depends: neurodebian-popularity-contest Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-dbg_0.20130903~dfsg.1-1~nd60+1_amd64.deb Size: 18143416 SHA256: 29bcfe1016a6d9976497fce1c15fd6bb905445ad0119516c1b0a3313dd4249a5 SHA1: af42ec21937b02568e52351c3a87d83292089161 MD5sum: b93b8358973263623b26a573aa4880e6 Description: debug symbols for AFNI AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides debug symbols which could be useful to troubleshoot and report problems with AFNI. Package: afni-dev Source: afni Version: 0.20130903~dfsg.1-1~nd60+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 22580 Depends: neurodebian-popularity-contest Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-dev_0.20130903~dfsg.1-1~nd60+1_amd64.deb Size: 4571980 SHA256: 716acdeaa7f1aa12a2ba83b5cc71490ec5f553d9c8cb34815122476bf0da2c2c SHA1: 13b8687ca6d1a30dc616497fa52208eb5c2e7dcc MD5sum: 6a048c5ea91c2e17dc6538c8c8a58431 Description: header and static libraries for AFNI plugin development AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides the necessary libraries and header files for AFNI plugin development. Package: fsl-5.0-complete Source: fslmeta Version: 5.0.4-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 32 Depends: fsl-5.0-core (>= 5.0.4-1~nd60+1~), fsl-5.0-doc (>= 5.0.4-1~nd60+1~), fsl-atlases (>= 5.0~), fslview, fsl-possum-data (>= 5.0~), fsl-first-data (>= 5.0~) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: contrib/science Filename: pool/contrib/f/fslmeta/fsl-5.0-complete_5.0.4-1~nd60+1_all.deb Size: 2500 SHA256: be63d3601335391a8c48bb83cfd8e5c0f5bb67129c0d2d1cc27da453b2fe9b9f SHA1: 53dba1af91dd23bb38a0ee43a6588b341cc43e11 MD5sum: 232b491100e19a401c459733fd56ecaa Description: metapackage for the entire FSL suite (tools and data) FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Installing this meta package yields a complete FSL 5.0 installation, including all tools and data packages. Package: fsl-complete Source: fslmeta Version: 5.0.4-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 32 Depends: fsl-5.0-complete Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: contrib/science Filename: pool/contrib/f/fslmeta/fsl-complete_5.0.4-1~nd60+1_all.deb Size: 2460 SHA256: f11aa2b7fb7c6d7fb86e1ef9c03c55bbb48131bc38ca06b45add343d39daf820 SHA1: 6172cf77eb6c60cd7828b9251e5505340a827369 MD5sum: 57e3fa88def150c19c1a4806883c27b0 Description: metapackage for the entire FSL suite (tools and data) FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Installing this meta package yields a complete installation of the latest FSL version, including all tools and data packages. Package: jist Version: 2.0.20100907.dfsg1-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 40092 Depends: mipav, openjdk-6-jre | java6-runtime, libcommons-cli-java (>= 1.2), libdrmaa-java, libjgraph-java (>= 5.10.1.2), libxom-java (>= 1.2.1), libxpp3-java (>= 1.1.4c), libxstream-java (>= 1.3.1) Homepage: http://www.nitrc.org/projects/jist/ Priority: extra Section: contrib/science Filename: pool/contrib/j/jist/jist_2.0.20100907.dfsg1-1_all.deb Size: 9020652 SHA256: b4059b70c695e9caba46e8ea1cca6482819c740b2d91b56a569a11f6c7fc60ba SHA1: 1f898a03ea355a710e23cc79ff3b5d4c63295852 MD5sum: 800acee273ebe4a3bd78c49d32188556 Description: Java Image Science Toolkit Java Image Science Toolkit (JIST) provides a native Java-based imaging processing environment similar to the ITK/VTK paradigm. Initially developed as an extension to MIPAV (CIT, NIH, Bethesda, MD), the JIST processing infrastructure provides automated GUI generation for application plug-ins, graphical layout tools, and command line interfaces. Package: matlab-eeglab11 Source: eeglab11 Version: 11.0.0.0~b~dfsg.1-1~nd60+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 42416 Depends: neurodebian-popularity-contest, matlab-support Recommends: eeglab11-sampledata Priority: extra Section: contrib/science Filename: pool/contrib/e/eeglab11/matlab-eeglab11_11.0.0.0~b~dfsg.1-1~nd60+1_all.deb Size: 14149370 SHA256: 430d8f72b93a5356c66f21c50875fb8534f227c22eb580169d390bdfc78e8172 SHA1: 76977ca67306c8a7bc3c5ad1818eef01eb2f1e3e MD5sum: ca963faf8c248d59721150914ca6a7f0 Description: electrophysiological data analysis This is sofwware for processing continuous or event-related EEG or other physiological data. It is designed for use by both novice and expert users. In normal use, the EEGLAB graphic interface calls graphic functions via pop-up function windows. The EEGLAB history mechanism can save the resulting calls to disk for later incorporation into scripts. . This package provides EEGLAB to be used with Matlab. Note that this package depends on Matlab -- a commercial software that needs to be obtained and installed separately. Package: matlab-gdf Source: libgdf Version: 0.1.2-2~nd60+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 164 Depends: neurodebian-popularity-contest, libgdf-dev (>= 0.1.2-2~nd60+1), matlab-support Homepage: http://sourceforge.net/projects/libgdf Priority: extra Section: contrib/science Filename: pool/contrib/libg/libgdf/matlab-gdf_0.1.2-2~nd60+1_all.deb Size: 23768 SHA256: d1889378944eb0f7e67c73ccd010a9c862e8eea93a87dac5affe49f1a4efd791 SHA1: 3f50bffb67a10f6980a5f16f3300a8a21ce7ae1d MD5sum: cea8fb406f7ceb37f8bfc26bdda99b96 Description: IO library for the GDF -- Matlab interface GDF (General Dataformat for Biosignals) is intended to provide a generic storage for biosignals, such as EEG, ECG, MEG etc. . This package builds Matlab bindings for GDF at installation time. Note that this package depends on Matlab -- a commercial software that needs to be obtain and installed separately. Package: matlab-spm8 Source: spm8 Version: 8.5236~dfsg.1-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1464 Depends: neurodebian-popularity-contest, matlab-support, spm8-common (= 8.5236~dfsg.1-1~nd60+1), make Provides: spm, spm8 Priority: extra Section: contrib/science Filename: pool/contrib/s/spm8/matlab-spm8_8.5236~dfsg.1-1~nd60+1_all.deb Size: 233036 SHA256: d15d493aa74315abaae9237b32b62fa88096f1def287513492070e143df4477c SHA1: 4915e045768f9e4632487c7f60648e37c99715d0 MD5sum: 345fc898a46475ae8e647baf20c64ab6 Description: analysis of brain imaging data sequences for Matlab Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provides SPM to be used with Matlab. Note that this package depends on Matlab -- a commercial software that needs to be obtained and installed separately. Package: matlab-support Version: 0.0.19~nd60+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 96 Depends: neurodebian-popularity-contest, debconf (>= 1.3.22) | cdebconf (>= 0.43), debconf (>= 0.5) | debconf-2.0, libxp6, sudo Recommends: libstdc++6-4.4-dev | libstdc++-dev Conflicts: matlab (<= 0.0.14~) Replaces: matlab (<= 0.0.14~) Priority: optional Section: contrib/devel Filename: pool/contrib/m/matlab-support/matlab-support_0.0.19~nd60+1_all.deb Size: 31816 SHA256: af39d54054b21a396b1698aaef6b3a14310afa4a75918e2e85c449e5cda4b8f7 SHA1: f225c185a4916280e3c1e8c7ab27a100eef34653 MD5sum: b8ba597c21c3020fdd95da3a595f1d02 Description: distro integration for local MATLAB installations This package does not provide MATLAB. Instead, it configures an existing MATLAB installation to integrate more comfortably in a Debian installation. . Currently it provides /usr/bin/matlab through the alternatives system, offers to work around incompatibilities between the libraries bundled with MATLAB and system libraries, and provides a helper utility meant to be used by other packages to compile MEX extensions. . Install this if you would like your MATLAB installation to behave more like an ordinary Debian package. Other packages may depend on this one if they install MATLAB code, for example in order to compile MEX extensions.