Package: afni Version: 0.20130912~dfsg.1-1~nd+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 31864 Depends: neurodebian-popularity-contest, afni-common (= 0.20130912~dfsg.1-1~nd+1), tcsh, gifsicle, libjpeg-progs, freeglut3, libc6 (>= 2.15), libf2c2, libgiftiio0, libgl1-mesa-glx | libgl1, libglib2.0-0 (>= 2.12.0), libglu1-mesa | libglu1, libglw1-mesa | libglw1, libgomp1 (>= 4.2.1), libgsl0ldbl (>= 1.9), libgts-0.7-5 (>= 0.7.6), libice6 (>= 1:1.0.0), libnetcdfc7, libnifti2, libsm6, libvolpack1, libx11-6, libxext6, libxm4 (>= 2.3.4), libxmu6, libxt6, xmhtml1 (>= 1.1.7-19~), zlib1g (>= 1:1.1.4) Recommends: nifti-bin, bzip2, ffmpeg, netpbm, qhull-bin Suggests: r-base Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni_0.20130912~dfsg.1-1~nd+1_i386.deb Size: 7904310 SHA256: 3ee949638705f37429e34cf09e2f3f5efa9d4551b5aba194c05ff98e2b86374e SHA1: 8536873a766dd7c01e7aad484af571c0e54bea40 MD5sum: e9e8b562fb962665f693512548aca275 Description: toolkit for analyzing and visualizing functional MRI data AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . In addition to its own format, AFNI understands the NIfTI format and is therefore integrates easily with FSL and FreeSurfer. Package: afni-common Source: afni Version: 0.20130912~dfsg.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 10159 Depends: neurodebian-popularity-contest, python, tcsh Recommends: python-mdp, python-nibabel, afni-atlases Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-common_0.20130912~dfsg.1-1~nd+1_all.deb Size: 6051806 SHA256: 23395ab1c558da37b30932cf74f91889fc958387a2d02a8fcdd81f9d4fa18e02 SHA1: e97dbc1e5abba22acdd372928788e7773d1fc221 MD5sum: 665f9468bac39adef3c147743c736725 Description: miscellaneous scripts and data files for AFNI AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides the required architecture independent parts of AFNI. Package: afni-dbg Source: afni Version: 0.20130912~dfsg.1-1~nd+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 57043 Depends: neurodebian-popularity-contest Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-dbg_0.20130912~dfsg.1-1~nd+1_i386.deb Size: 14269232 SHA256: e2c427b8574b6f16c2372f631a1e1915ddf408c407ea6014b36690d31d43a8bd SHA1: 137c7d6f47bda76e9acb62d8fc6905e91ab0bacf MD5sum: 3cf73a0c06dc6f278a47e9bdc36bf795 Description: debug symbols for AFNI AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides debug symbols which could be useful to troubleshoot and report problems with AFNI. Package: afni-dev Source: afni Version: 0.20130912~dfsg.1-1~nd+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 13121 Depends: neurodebian-popularity-contest Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-dev_0.20130912~dfsg.1-1~nd+1_i386.deb Size: 3071770 SHA256: b242edfb5d56b5126d00dbe30b33a4f444d1092990376b357da4ff19e571d6fd SHA1: e84282536f078d0237481b0316b37e0e18f5fd93 MD5sum: 5f1ae75470e661ef5a23e80536ad8126 Description: header and static libraries for AFNI plugin development AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides the necessary libraries and header files for AFNI plugin development. Package: fsl-5.0-complete Source: fslmeta Version: 5.0.4-1~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 26 Depends: fsl-5.0-core (>= 5.0.4-1~nd+1~), fsl-5.0-doc (>= 5.0.4-1~nd+1~), fsl-atlases (>= 5.0~), fslview, fsl-possum-data (>= 5.0~), fsl-first-data (>= 5.0~) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: contrib/science Filename: pool/contrib/f/fslmeta/fsl-5.0-complete_5.0.4-1~nd+1_all.deb Size: 2490 SHA256: 715a45645614b11e072a25b8721f30c954cae45ad0344073f1a6a65565fde074 SHA1: 916a8f43d3e9c292073964fcaa98d36f2d142c46 MD5sum: d782a727e2d9243fd1b4fa54994cc410 Description: metapackage for the entire FSL suite (tools and data) FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Installing this meta package yields a complete FSL 5.0 installation, including all tools and data packages. Package: fsl-complete Source: fslmeta Version: 5.0.4-1~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 26 Depends: fsl-5.0-complete Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: contrib/science Filename: pool/contrib/f/fslmeta/fsl-complete_5.0.4-1~nd+1_all.deb Size: 2448 SHA256: d5f87508195b64c3e2d112411f249cade31ba9ad83bdacecc0fd64e91b24214a SHA1: 33279d4fa451eee43469e87562559720f64a00d5 MD5sum: 3fa8c0322b25b7bb0fe57a66a93e3f14 Description: metapackage for the entire FSL suite (tools and data) FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Installing this meta package yields a complete installation of the latest FSL version, including all tools and data packages. Package: jist Version: 2.0.20100907.dfsg1-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 40092 Depends: mipav, openjdk-6-jre | java6-runtime, libcommons-cli-java (>= 1.2), libdrmaa-java, libjgraph-java (>= 5.10.1.2), libxom-java (>= 1.2.1), libxpp3-java (>= 1.1.4c), libxstream-java (>= 1.3.1) Homepage: http://www.nitrc.org/projects/jist/ Priority: extra Section: contrib/science Filename: pool/contrib/j/jist/jist_2.0.20100907.dfsg1-1_all.deb Size: 9020652 SHA256: b4059b70c695e9caba46e8ea1cca6482819c740b2d91b56a569a11f6c7fc60ba SHA1: 1f898a03ea355a710e23cc79ff3b5d4c63295852 MD5sum: 800acee273ebe4a3bd78c49d32188556 Description: Java Image Science Toolkit Java Image Science Toolkit (JIST) provides a native Java-based imaging processing environment similar to the ITK/VTK paradigm. Initially developed as an extension to MIPAV (CIT, NIH, Bethesda, MD), the JIST processing infrastructure provides automated GUI generation for application plug-ins, graphical layout tools, and command line interfaces. Package: matlab-eeglab11 Source: eeglab11 Version: 11.0.0.0~b~dfsg.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 40738 Depends: neurodebian-popularity-contest, matlab-support Recommends: eeglab11-sampledata Priority: extra Section: contrib/science Filename: pool/contrib/e/eeglab11/matlab-eeglab11_11.0.0.0~b~dfsg.1-1~nd+1_all.deb Size: 14149348 SHA256: 455350d6a826a5abb2170ea489a354f94b384bb75512369be6c57b1329b35aea SHA1: 32131ade56b38f857b2dfa85860c626897ffc5b6 MD5sum: 2e9241791578ded3f4f447121c871aff Description: electrophysiological data analysis This is sofwware for processing continuous or event-related EEG or other physiological data. It is designed for use by both novice and expert users. In normal use, the EEGLAB graphic interface calls graphic functions via pop-up function windows. The EEGLAB history mechanism can save the resulting calls to disk for later incorporation into scripts. . This package provides EEGLAB to be used with Matlab. Note that this package depends on Matlab -- a commercial software that needs to be obtained and installed separately. Package: matlab-gdf Source: libgdf Version: 0.1.2-2~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 125 Depends: neurodebian-popularity-contest, libgdf-dev (>= 0.1.2-2~nd+1), matlab-support Homepage: http://sourceforge.net/projects/libgdf Priority: extra Section: contrib/science Filename: pool/contrib/libg/libgdf/matlab-gdf_0.1.2-2~nd+1_all.deb Size: 23790 SHA256: b34bc091b8f8bb24e8d81caf6a5b8aa81b21fc8e8ea5434581f16be1e855e957 SHA1: b994179e49c38f083c4146abed2a5db0da4149e7 MD5sum: f6ae0e84c4ed3a30669f78c256a3ba6b Description: IO library for the GDF -- Matlab interface GDF (General Dataformat for Biosignals) is intended to provide a generic storage for biosignals, such as EEG, ECG, MEG etc. . This package builds Matlab bindings for GDF at installation time. Note that this package depends on Matlab -- a commercial software that needs to be obtain and installed separately. Package: matlab-spm8 Source: spm8 Version: 8.5236~dfsg.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1251 Depends: neurodebian-popularity-contest, matlab-support, spm8-common (= 8.5236~dfsg.1-1~nd+1), make Provides: spm, spm8 Priority: extra Section: contrib/science Filename: pool/contrib/s/spm8/matlab-spm8_8.5236~dfsg.1-1~nd+1_all.deb Size: 237186 SHA256: f7dcd17bab4fc1885928bb0a40fbc09290e735b16d62f16b8ac78d01fce46d33 SHA1: f3d36f6ff78470980f15c566b180deb1e2b5ae9b MD5sum: 257e7ac8aa00035425ea9ea8bd3fc06a Description: analysis of brain imaging data sequences for Matlab Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provides SPM to be used with Matlab. Note that this package depends on Matlab -- a commercial software that needs to be obtained and installed separately. Package: matlab-support Version: 0.0.19~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 60 Depends: neurodebian-popularity-contest, debconf (>= 1.3.22) | cdebconf (>= 0.43), debconf (>= 0.5) | debconf-2.0, libxp6, sudo Recommends: libstdc++6-4.4-dev | libstdc++-dev Conflicts: matlab (<= 0.0.14~) Replaces: matlab (<= 0.0.14~) Priority: optional Section: contrib/devel Filename: pool/contrib/m/matlab-support/matlab-support_0.0.19~nd+1_all.deb Size: 31806 SHA256: a0e29939f4799c0913ade2b77fd14a29b608d764f7067462f1ed3014275c8dff SHA1: efe8fd3e5a45c06c346a88c75c403c466b782603 MD5sum: 8a7d3fc078bf2eb65d21c0588393a0bd Description: distro integration for local MATLAB installations This package does not provide MATLAB. Instead, it configures an existing MATLAB installation to integrate more comfortably in a Debian installation. . Currently it provides /usr/bin/matlab through the alternatives system, offers to work around incompatibilities between the libraries bundled with MATLAB and system libraries, and provides a helper utility meant to be used by other packages to compile MEX extensions. . Install this if you would like your MATLAB installation to behave more like an ordinary Debian package. Other packages may depend on this one if they install MATLAB code, for example in order to compile MEX extensions.