Package: fsl Version: 5.0.4-3~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 29 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.4-3~nd12.04+1_all.deb Size: 19738 SHA256: 76916d9451faf4505a6f81584cf8453b5fbd0f4e3c066d7e193b840ffd886c70 SHA1: 5327d33fbb6e3188ce3394c59a0b61448b47f00f MD5sum: 752f5811eea931c31257cbb331a142bc Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-core' package which replaces 'fsl'. It can safely be removed. Package: fsl-5.0 Source: fsl Version: 5.0.4-3~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 26 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.4-3~nd12.04+1_all.deb Size: 18282 SHA256: fd8d9f6cf1111c931802f78d6c770b369d2d940b18e25c92096cead80f16163a SHA1: 2568fef0aa932a41501f4bacbd9ea9ea95870a95 MD5sum: 5bb16e24bde6a8bed7fd531606015a0d Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-core' package which replaces 'fsl-5.0'. It can safely be removed. Package: fsl-5.0-doc Source: fsl Version: 5.0.4-3~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 23524 Recommends: fslview-doc Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.4-3~nd12.04+1_all.deb Size: 18701752 SHA256: 15b523650ae6f49d9bfbf29a4eef03eaddff681523a1fe3e5cea02bb43376f7b SHA1: 3fe74da7a703321ec137f63880b9d4ab4b9391ee MD5sum: 81f60e3b062f1974097e80049c72a168 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-core Source: fsl Version: 5.0.4-3~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 28 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.4-3~nd12.04+1_all.deb Size: 19512 SHA256: d05547cd163114034a3ee913907f8026d7e655c1a789042ad1de2ae6606d2fe8 SHA1: abb3e746e14f0289de688307c16cdcdbb0e2847e MD5sum: 2016e1642b6b63e775ffaff64c2f50e7 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. Package: fsl-doc-4.1 Source: fsl Version: 4.1.9-6~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 17495 Recommends: fslview-doc Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-doc-4.1_4.1.9-6~nd12.04+1_all.deb Size: 11202278 SHA256: e6c1b8831beabc35ace88708b3ce183f6170f49c2488f5a4811630d732eb3a22 SHA1: aba43e80be1c70c679effa0fda5b7e6d0ee13be0 MD5sum: e7d508aa59beaa3f40c384c64483c662 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-doc-5.0 Source: fsl Version: 5.0.4-3~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 26 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.4-3~nd12.04+1_all.deb Size: 18288 SHA256: 42d64446161f883abde7eb2030399935f0bd3d4b97a9481f684809bc499d355b SHA1: 291124cb5b5f7715d96012b6188dd83f526f0156 MD5sum: 54d6d3b2a73513ca6f8b68a19e84fd6b Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. It can safely be removed. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.11.20130711-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.11.20130711-1~nd+1), psychtoolbox-3-common (>= 3.0.11.20130711-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.11.20130711-1~nd+1_all.deb Size: 3724 SHA256: 0abb53d18cbe1b94b378131bb08bb51c9ea6e7522120f91a63a8bed074710a4b SHA1: 63a9aeb70b9c3fb2466d1c57273f92b2327b63de MD5sum: c91e0cbc60dfb60ac8785e2c5a80023d Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3063 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd12.04+1_all.deb Size: 2051876 SHA256: c6ddd49fdaa533afcb03f492ce010cc8e37273a791beed44ff4db4e7953d0ce3 SHA1: dcd7ee76a6604d8997b2cbc066997d15dca17d31 MD5sum: 31eda233bb479d3d21349372e66807b7 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.