Package: fsl-atlases Source: fsldata Version: 5.0.2.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 6 Depends: fsl-harvard-oxford-atlases, fsl-juelich-histological-atlas, fsl-jhu-dti-whitematter-atlas, fsl-mni-structural-atlas, fsl-talairach-daemon-atlas, fsl-oxford-thalamic-connectivity-atlas, fsl-bangor-cerebellar-atlas, fsl-mni152-templates, fsl-oxford-striatal-atlas, fsl-subthalamic-nucleus-atlas Replaces: fsl-data Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-atlases_5.0.2.2-2_all.deb Size: 4426 SHA256: 37736a0d0cb663557158c810921926cfa6da3267585854441181bbf322318247 SHA1: 086bcc5af298b21b95dbf1cc7f7416a662ed62b9 MD5sum: 314d7ddaa742738db00b1b63d2bb8278 Description: FSL's MNI152 standard space stereotaxic brain atlases This meta-package installs all stereotaxic atlases that are shipped with FSL. Package: fsl-bangor-cerebellar-atlas Source: fsldata Version: 5.0.2.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1788 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-bangor-cerebellar-atlas_5.0.2.2-2_all.deb Size: 1326886 SHA256: f36173fa872808dcc28e56a5006486f17bb8e1d43df3ef3f6c57aad59011de6a SHA1: 4db8410f2b3ee4ece11edb84bafc046db1010628 MD5sum: 0de481928799246b3ddb16d531fb9fd4 Description: probabilistic atlas of the human cerebellum This is a probabilistic atlas of the cerebellar lobules in the anatomical space defined by the MNI152 template. Lobules were masked separately on T1-weighted MRI scans (1 mm isotropic resolution) of 20 healthy young participants (10 male, 10 female, average age 23.7 yrs). These cerebella were then aligned to the standard or non-linear version of the whole-brain MNI152 template using a number of commonly used normalization algorithms, or to a previously published cerebellum-only template (Diedrichsen, J., 2006. A spatially unbiased atlas template of the human cerebellum. NeuroImage 33, 127-138). . This package is part of FSL. Package: fsl-feeds Version: 5.0.4-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 280425 Depends: fsl-5.0-core | fsl-5.0 | fsl, dc, tcl8.4 | tclsh, debianutils (>= 1.7), fsl-atlases (>= 4.1) Recommends: fsl-first-data (>= 4.1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsl-feeds/fsl-feeds_5.0.4-1_all.deb Size: 283574452 SHA256: ec972111056296aaf559bf2ba480e47cad1cc8d02771c781d612dee641cb22bf SHA1: d773329c3703d1ceee8115ce70543e4a249a9fbc MD5sum: b3afe6c5cd8e9ac2ce8c3d53f2f22ce2 Description: FSL Evaluation and Example Data Suite FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the 'fsl-selftest' tool, that can be used to test whether FSL is working properly. Additionally the included example data might be useful when doing the first steps with FSL. . The datasets include both example input and example output data. Package: fsl-first-data Source: fsldata Version: 5.0.2.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1132666 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-first-data_5.0.2.2-2_all.deb Size: 1076157754 SHA256: 5fef88f07e16e71c40af817a13b609a32eb9fc2e51eb008b4db230f6af80321a SHA1: 0a0b90174f842208a8ac24678d4c3bf3fe5222d6 MD5sum: 8b6dd061b0700df6e26b012cf59c6461 Description: model data for FIRST subcortical brain segmentation This package is part of FSL. Package: fsl-harvard-oxford-atlases Source: fsldata Version: 5.0.2.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 21469 Recommends: fsl-harvard-oxford-cortical-lateralized-atlas Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-harvard-oxford-atlases_5.0.2.2-2_all.deb Size: 20752454 SHA256: 24638d37706d65ee61612395029cdd140c25e86fb905535232420b228622b753 SHA1: 2dbbfbaf5ca07811d04246a8666cad9398d82a61 MD5sum: a30c62dd4aef91c099279c06d1b1e78f Description: probabilistic atlas of human cortical and subcortical brain areas Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis. . T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label. . This package is part of FSL. Package: fsl-harvard-oxford-cortical-lateralized-atlas Source: fsldata Version: 5.0.2.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 8134 Depends: fsl-harvard-oxford-atlases Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-harvard-oxford-cortical-lateralized-atlas_5.0.2.2-2_all.deb Size: 4971110 SHA256: faa9549e7ef0b31ed9e3a62d5c58fbf888c52e0ffd9954d1efb273fd8e3dcfef SHA1: 1d36b1a9589dfa749d41bb09db3ae18875ea59c8 MD5sum: b498f69d1b45a9b4b8340f6819ef2760 Description: probabilistic atlas of human cortical and subcortical brain areas Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis. . T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label. . This atlas is derived from the official FSL's cortical atlas where laterality probability is taken from the subcortical atlas. . This package is not a part of official FSL distribution. Package: fsl-jhu-dti-whitematter-atlas Source: fsldata Version: 5.0.2.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 13570 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-jhu-dti-whitematter-atlas_5.0.2.2-2_all.deb Size: 13666698 SHA256: 721cd7e3c7986ceb5fc488700eb040a54b48d79ea341a6585af44481563444c4 SHA1: 110a6c308046fcb149918033f3aa8ec237892384 MD5sum: 2744b215ddff276a2a884b5f6ca05f73 Description: human brain white-matter atlas There are two white-matter atlases, both kindly provided by Dr. Susumu Mori, Laboratory of Brain Anatomical MRI, Johns Hopkins University. . In the ICBM-DTI-81 white-matter labels atlas, 50 white matter tract labels were created by hand segmentation of a standard-space average of diffusion MRI tensor maps from 81 subjects; mean age 39 (18:59), M:42, F: 39. The diffusion data was kindly provided by the ICBM DTI workgroup. . In the JHU white-matter tractography atlas, 20 structures were identified probabilistically by averaging the results of running deterministic tractography on 28 normal subjects (mean age 29, M:17, F:11). . This package is part of FSL. Package: fsl-juelich-histological-atlas Source: fsldata Version: 5.0.2.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 4650 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-juelich-histological-atlas_5.0.2.2-2_all.deb Size: 3747908 SHA256: d568becc9d8c78c0f7f5af4784198ac35902d8bf203a2857f600ac695c1ea1b5 SHA1: 28c1c5ace20b31423462003de2f248c874f99f1e MD5sum: 59a6311082519862f613593d459a8017 Description: brain atlas based on cyto- and myelo-architectonic segmentations A probabilistic atlas created by averaging multi-subject post-mortem cyto- and myelo-architectonic segmentations, performed by the team of Profs Zilles and Amunts at the Research Center Jülich and kindly provided by Simon Eickhoff. . The atlas contains 32 grey matter structures and 10 white matter structures. This is the same data as used in Eickhoff's Anatomy Toolbox v1.5. The atlas is based on the microscopic and quantitative histological examination of ten human post-mortem brains. The histological volumes of these brains were 3D reconstructed and spatially normalised into the space of the MNI single subject template to create a probabilistic map of each area. For the FSL version of this atlas, these probabilistic maps were then linearly transformed into MNI152 space. . This package is part of FSL. Package: fsl-mni-structural-atlas Source: fsldata Version: 5.0.2.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 2686 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni-structural-atlas_5.0.2.2-2_all.deb Size: 2625376 SHA256: 49105562488afef47c1f84b53944231da77fb174ee1213d8a71bbcd7f64c84c9 SHA1: cc148162db64639c8c71efdc1f5f7f8258b684c7 MD5sum: 42705cdb9dda25e90d6854f9b6add260 Description: hand-segmented single-subject human brain atlas 9 anatomical structural regions, kindly provided by Jack Lancaster at the Research Imaging Center, UTHSCSA, Texas (originally from the McConnell Brain Imaging Centre, MNI). . A single subject's structural image was hand segmented, and the labels were then propagated to more than 50 subjects' structural images using nonlinear registration. Each resulting labelled brain was then transformed into MNI152 space using affine registration, before averaging segmentations across subjects to produce the final probability images. . This package is part of FSL. Package: fsl-mni152-templates Source: fsldata Version: 5.0.2.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 56533 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni152-templates_5.0.2.2-2_all.deb Size: 54925460 SHA256: f27aa3e9a84ffa606a94e7126b6675f134eaf5b7b93ba4934c4492559b9f7dbc SHA1: c9094fb5f79f59e406f0e868ad20bf35591ef790 MD5sum: 475f32d56d0ecce20f280b1d8993d74c Description: MNI152 stereotaxic brain templates for FSL This package is part of FSL. Package: fsl-oxford-striatal-atlas Source: fsldata Version: 5.0.2.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 885 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-striatal-atlas_5.0.2.2-2_all.deb Size: 309766 SHA256: 0176bf5be51bb7f69942f173620c23e0382c0ad0d1d56143d84494c99794b414 SHA1: 16db77854c32b158961bc68fd003aa3d7d8ecb9a MD5sum: c72ba07ec42be551c84a37ab83e5bc91 Description: probabilistic atlas of the human brain's sub-striatal regions This package provide both a structural and a connectivity atlas of the human striatum. For the latter, sub-striatal regions are segmented according to their white-matter connectivity to cortical areas. This connectivity atlas reports anatomical connection from points in the striatum to each of 7 cortical zones obtained using probabilistic diffusion tractography in multiple subjects. . In the structural atlas sub-striatal regions are segmented according to the anatomical structure. Striatum is divided into caudate, putamen and ventral striatum according to the guidelines described by Tziortzi et al., NeuroImage 54: 264-77. The sub-regions were manually delineated on the non-linear MNI152 template. . This package is part of FSL. Package: fsl-oxford-thalamic-connectivity-atlas Source: fsldata Version: 5.0.2.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 299 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-thalamic-connectivity-atlas_5.0.2.2-2_all.deb Size: 221804 SHA256: abdf24f96e89ab7e57f3d1b7ee2f9161050c73f2d24a49e42719d1c477344d9d SHA1: aeafe24399f0453143e5ff3d4700b4d43a4fc532 MD5sum: 076bf7d93738424966611a9c3afe9071 Description: probabilistic brain atlas of thalamic white-matter connectivity A probabilistic atlas of 7 sub-thalamic regions, segmented according to their white-matter connectivity to cortical areas, kindly provided by Heidi Johansen-Berg and Timothy Behrens, FMRIB. . This connectivity atlas reports probability of anatomical connection from points in the thalamus to each of 7 cortical zones. These probabilities are calculated using probabilistic diffusion tractography in multiple subjects. . This package is part of FSL. Package: fsl-possum-data Source: fsldata Version: 5.0.2.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 41236 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-possum-data_5.0.2.2-2_all.deb Size: 41621096 SHA256: 46a31828230bec4c88832b7a5822d71dbc03c6bc7e3608ccd4bf0720871fd3cb SHA1: 12e4874c199c14700710985b4667b1ecd1ba1243 MD5sum: d7514c798c540f8e3ea47ce7ad7c8dc5 Description: sequence templates for the POSSUM MRI-simulator This package is part of FSL. Package: fsl-subthalamic-nucleus-atlas Source: fsldata Version: 5.0.2.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1120 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-subthalamic-nucleus-atlas_5.0.2.2-2_all.deb Size: 29688 SHA256: ad07c6e4178b8636721f5cfe5c79b68699a518c058da67013b4888086cac5cc3 SHA1: 81cdcc9d918d803025ad45f7983e40f1fc54e2e8 MD5sum: 4d6413a73ce48806c725639aac98f0c4 Description: probabilistic subthalamic nucleus atlas This atlas takes advantage of the ultra-high resolution possible in 7T MRI to provide unprecedented levels of detail on structures of the basal ganglia in vivo. The atlas includes (so far) probability maps of the right and left Subthalamic Nucleus (STN) using T2*-imaging. For now it has been created on 13 young healthy participants (6 female) with a mean age of 24.38 (range: 22-28, standard deviation: 2.36). More details are available in . B.U. Forstmann, Keuken, M. C., Jahfari, S., Bazin, P.-L., Neumann, J., Schaefer, A., Anwander, A., & Turner, R. (2012). Cortico-subthalamic white matter tract strength predict interindividual efficacy in stopping a motor response. NeuroImage, 60, 370-375. . This package is part of FSL. Package: fsl-talairach-daemon-atlas Source: fsldata Version: 5.0.2.2-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 605 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-talairach-daemon-atlas_5.0.2.2-2_all.deb Size: 459296 SHA256: 7efa69d921f583a797cd25a47237d3e9943c9a9b104e3c3eb1f10eccf598dfd8 SHA1: d732b7ca62b31fd331e754319cce78a596efae7f MD5sum: 2fdc4f3b9ea6ee56d96a1c1540662ab0 Description: structural anatomy labels of the Talairach atlas A conversion of the original Talairach structural labellings, kindly provided by Jack Lancaster and Diana Tordesillas Gutiérrez at the Research Imaging Center, UTHSCSA, Texas. . This is a digitised version of the original (coarsely sliced) Talairach atlas (Lancaster 2000) after the application of a correcting affine transform (Lancaster 2007) to register it into MNI152 space. . This package is part of FSL.