Package: fsl Version: 5.0.4-3~nd12.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 29 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.4-3~nd12.10+1_all.deb Size: 19738 SHA256: 3f6a847c7316b75a5c29b2cfae61c64c3e5e3d6512f3b9642d85efcd28e207f7 SHA1: 6d3249b471c13a637a9f97d16f3b9b0bbf84c6c2 MD5sum: 8b4d3653b6c7a4ce6a38a88a6dbfc530 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-core' package which replaces 'fsl'. It can safely be removed. Package: fsl-5.0 Source: fsl Version: 5.0.4-3~nd12.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 26 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.4-3~nd12.10+1_all.deb Size: 18276 SHA256: 498f6fef7bafadfe7ecc89df13456c5aff8ff14a1e5ce2984693aa631f1b46a4 SHA1: 6b0f5dced74ae61a2d16374f4b7f9ce454e90b24 MD5sum: fc955cbfc5026d5bde40b93818f01331 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-core' package which replaces 'fsl-5.0'. It can safely be removed. Package: fsl-5.0-core Source: fsl Version: 5.0.4-3~nd12.10+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 35761 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk8.4 (>= 8.4.7), tcl8.4 (>= 8.4.7), bc, dc, python, libc6 (>= 2.11), libgcc1 (>= 1:4.1.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgomp1 (>= 4.2.1), libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4) Recommends: fsl-5.0-doc (= 5.0.4-3~nd12.10+1), fsl-atlases, fslview Suggests: fsl-feeds, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.4-3~nd12.10+1_i386.deb Size: 13787870 SHA256: dde5007ee55785486de46a122e2c5beebcc0e6a4fc1fbe90b8af25ea5583a008 SHA1: b58f68f32c298eac3d111db080fcc46d88ba283c MD5sum: e9a3acd20a5a60278f62a4cf81ee6208 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-doc Source: fsl Version: 5.0.4-3~nd12.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 23524 Recommends: fslview-doc Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.4-3~nd12.10+1_all.deb Size: 18701736 SHA256: 987445f8b3176a67838ff2cabcec47ab9b275ae1f0c46ad925f9b3e064c06c82 SHA1: ff064d926f34e380f3051480e08974d1c13e390f MD5sum: e9fe77e7606a0b3235b6a79e2b4ebc9d Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-core Source: fsl Version: 5.0.4-3~nd12.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 28 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.4-3~nd12.10+1_all.deb Size: 19512 SHA256: f7a3fa1f891a80fa93d7320ae3bc39d3818e5ecd02ba3efb455b8f003f46bc54 SHA1: 20cc70495059a9b6db6911c4ee0c862608891699 MD5sum: d0a22abf8eda0688a722dd1aeaa95b79 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. Package: fsl-doc-5.0 Source: fsl Version: 5.0.4-3~nd12.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 26 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.4-3~nd12.10+1_all.deb Size: 18284 SHA256: 1569431fff0f499478f369a218aa0ed413cd4d4026e1646e737338fd453add28 SHA1: 1793804114d60edaf19215a4b612526ab1f69873 MD5sum: ff523aabcf4645c72c8965fee34d31d5 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. It can safely be removed. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.11.20130711-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.11.20130711-1~nd+1), psychtoolbox-3-common (>= 3.0.11.20130711-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.11.20130711-1~nd+1_all.deb Size: 3724 SHA256: 0abb53d18cbe1b94b378131bb08bb51c9ea6e7522120f91a63a8bed074710a4b SHA1: 63a9aeb70b9c3fb2466d1c57273f92b2327b63de MD5sum: c91e0cbc60dfb60ac8785e2c5a80023d Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20130711-1~nd+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 4051 Depends: neurodebian-popularity-contest, psychtoolbox-3-lib (>= 3.0.11.20130711-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20130711-1~nd+1.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libglew1.9, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libgstreamer-plugins-base0.10-0, libgstreamer0.10-0, libopenal1, libpciaccess0, libusb-1.0-0, libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.11.20130711-1~nd+1_i386.deb Size: 1365460 SHA256: f11d305896d4710023bddc22f632d30ea99faa28d4eecb780c3f6ae32dbe5075 SHA1: f3c3471238e6d4b3cfb1a323b6c74bd4fb8dc584 MD5sum: 146230187a5d8d2e51d8ea7b5cfda550 Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: mipav Version: 5.0.0.20100907-2+nd11.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 64 Pre-Depends: debconf (>= 0.5) | debconf-2.0 Depends: openjdk-6-jre | java6-runtime, libjogl-java, libjava3d-java, wget Homepage: http://mipav.cit.nih.gov/ Priority: extra Section: non-free/science Filename: pool/non-free/m/mipav/mipav_5.0.0.20100907-2+nd11.10+1_all.deb Size: 15336 SHA256: fe4d8ac1493e775bf32fa0bbd5facb044963d309984a7276dba5dfb92b47cbe1 SHA1: 306d069f32ddeb4d2edce9c6236cc6b1342fcec8 MD5sum: bbee2be637a35d0a8c9bf739b01b0f4d Description: quantitative analysis and visualization of medical images The MIPAV (Medical Image Processing, Analysis, and Visualization) application enables quantitative analysis and visualization of medical images of numerous modalities such as PET, MRI, CT, or microscopy. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites can easily share research data and analyses, thereby enhancing their ability to research, diagnose, monitor, and treat medical disorders. MIPAV provides an interface for plug-ins and serves as the foundation for other projects (e.g. JIST). . This package provides downloader/installer for non-redistributable closed-source version of MIPAV and a convenience startup wrapper. You will have a choice of reviewing the license and accepting or declining it upon installation. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20130711-1~nd+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 1131 Depends: neurodebian-popularity-contest, octave-psychtoolbox-3 (>= 3.0.11.20130711-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20130711-1~nd+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.11.20130711-1~nd+1_i386.deb Size: 408514 SHA256: 09dc096fd9d70125c2a896bb624f48950f60ee17f70e4a7c6a6eb2d82190099b SHA1: e7f8f2b3a082b9431142b6649cacd1ff0c40ce1a MD5sum: 2f82540e38e108893967f6fafc2a247e Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd12.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3063 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd12.10+1_all.deb Size: 2051872 SHA256: 9b1a3e382dd98771188f43146d13331a6c8fc1ec97f0615a82a15e3228322ece SHA1: 2c29d33a6855dbe4bd84b84806a6e3c86b7d1574 MD5sum: 4a407690cff56b55f8d8358e2068e2aa Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.