Package: fsl Version: 5.0.4-3~nd13.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 29 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.4-3~nd13.04+1_all.deb Size: 19730 SHA256: a3deab0a1e786db177866b2b181c206b9448c529cbb07612946a0ee4f9b1d576 SHA1: 4d8e56345228889dbb7bb39b58936b2a73c2262d MD5sum: 9181dfeaa3eb2047da072d32ed611135 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-core' package which replaces 'fsl'. It can safely be removed. Package: fsl-5.0 Source: fsl Version: 5.0.4-3~nd13.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 26 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.4-3~nd13.04+1_all.deb Size: 18278 SHA256: 6a1f377d5eb3bb6588dc424fcf0ab0791a7a7dccd2a9d3cd3074faa3c4274654 SHA1: 58b2f53546509e5a8ea2033fce636b1701e779d8 MD5sum: 6c7d9ef4e92d66e3e4be5bc4a81284e3 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-core' package which replaces 'fsl-5.0'. It can safely be removed. Package: fsl-5.0-doc Source: fsl Version: 5.0.4-3~nd13.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 23524 Recommends: fslview-doc Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.4-3~nd13.04+1_all.deb Size: 18701750 SHA256: ffea4886328be31622abf19555fec7d729d7c1d560e6af4aae16a3b8cfd36806 SHA1: 380f208b97af94668666838da4096371d6df6912 MD5sum: 72eed2b695e3dc4a736bfa6a8081d778 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-core Source: fsl Version: 5.0.4-3~nd13.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 28 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.4-3~nd13.04+1_all.deb Size: 19508 SHA256: e6c8737a7609fa9786b3609e205f5b3c133b4582d91012e5abf9759f8d33695c SHA1: 2bc9ab41a5c6a2ad9dc765f1de356b9436d73dce MD5sum: 63be968f5f998525f037629287e03fd0 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. Package: fsl-doc-5.0 Source: fsl Version: 5.0.4-3~nd13.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 26 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.4-3~nd13.04+1_all.deb Size: 18286 SHA256: eb6977b56739052965ee0842e1b0fba49f664f34494cce64154b4b5b90579038 SHA1: 00d54593fc6495fdadd05e69013b315a3c925cf2 MD5sum: d05608506a626f97a76bbaab200616fc Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. It can safely be removed. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.11.20131017-2~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.11.20131017-2~nd+1), psychtoolbox-3-common (>= 3.0.11.20131017-2~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.11.20131017-2~nd+1_all.deb Size: 3766 SHA256: e7e51b61fe2e591422e37002292d1c812df39c71b2ff2118753f48c2532c179b SHA1: 0ad4f458fba8abebb78bd6bda32a2fc557c5e840 MD5sum: 3049e949dec35a98e503f67fee7f5618 Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd12.10+1+nd13.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3019 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd12.10+1+nd13.04+1_all.deb Size: 2053162 SHA256: 4e18f1aaf55b3a4dfc18db6aa8e936457186b32d4a2c33a1b18c324c11cd52d9 SHA1: 0f8ac540a5d0e552c38cab871e4ab63ffe0d4586 MD5sum: 6a725ba5cb09c8407cf6d65016584fce Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.