Package: fsl Version: 5.0.4-3~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 29 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.4-3~nd13.04+1+nd13.10+1_all.deb Size: 19768 SHA256: 5e9d12e5887a9e220e459d37a8fe0f1bcf5c25c03e661f4dedb15cdbe0c09b84 SHA1: 67577adfdfa24bd023ad9cca33e1ed5d56a0031c MD5sum: 015e6b0c8ba40a5e2c8399443504f193 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-core' package which replaces 'fsl'. It can safely be removed. Package: fsl-5.0 Source: fsl Version: 5.0.4-3~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 26 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.4-3~nd13.04+1+nd13.10+1_all.deb Size: 18312 SHA256: 06f3adaa461d37c971626f81e5b48064cfa249f2f488c6618c365218412ee38d SHA1: 522b7bb6884c6f3091c8427b16df705c96a29633 MD5sum: f6938485ff16bde63ad7841973a67568 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-core' package which replaces 'fsl-5.0'. It can safely be removed. Package: fsl-5.0-core Source: fsl Version: 5.0.4-3~nd13.04+1+nd13.10+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 35795 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk8.4 (>= 8.4.7), tcl8.4 (>= 8.4.7), bc, dc, python, libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libgd3 (>= 2.1.0~alpha~), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgomp1 (>= 4.2.1), libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4) Recommends: fsl-5.0-doc (= 5.0.4-3~nd13.04+1+nd13.10+1), fsl-atlases, fslview Suggests: fsl-feeds, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.4-3~nd13.04+1+nd13.10+1_amd64.deb Size: 13837114 SHA256: 03df3ba8be7f35c9856b85366381f6b488c137a6dce49764944fd25157cf1494 SHA1: 337e7a096c8dd48aaa1cbf046767f0146274b0bf MD5sum: 6daa7a18e986191c4025f77d8a0e4ce1 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-doc Source: fsl Version: 5.0.4-3~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 23524 Recommends: fslview-doc Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.4-3~nd13.04+1+nd13.10+1_all.deb Size: 18701794 SHA256: 021364d8a101d256a2da20d4b6db181483f9a0e73a9cc0806bc0794aae54517f SHA1: bf09aa914243cf14cd792726492e9310b00525b7 MD5sum: aba91847ff020a7e1a902029a42fbe92 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-core Source: fsl Version: 5.0.4-3~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 28 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.4-3~nd13.04+1+nd13.10+1_all.deb Size: 19546 SHA256: dc4a63f775efbeb8009c6c7f4fca89c53375ed9cc0cbb2917e555e98202ce9fe SHA1: 00258c7d8d2ef1acc3e953b96832475f4858a3a5 MD5sum: 63aeac92b54603a61d4755ca419895e0 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. Package: fsl-doc-5.0 Source: fsl Version: 5.0.4-3~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 26 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.4-3~nd13.04+1+nd13.10+1_all.deb Size: 18320 SHA256: 1f405b3d6195834b3c9246394bb4cabdb99d2a39cdda7f5874c345fc2c33bc87 SHA1: 537146496110370e8a3077267f659df2cf488639 MD5sum: ca2f64e92cd7bc70ff3568196cd4b993 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. It can safely be removed. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.11.20131017-2~nd+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.11.20131017-2~nd+1+nd13.10+1), psychtoolbox-3-common (>= 3.0.11.20131017-2~nd+1+nd13.10+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.11.20131017-2~nd+1+nd13.10+1_all.deb Size: 3922 SHA256: 272f61b37eabce6796563beef48b08f5b7f41a8ca5ff5acb77d324e11e481ec7 SHA1: 731108188bf2e5542c213975b024f0e11d7c9116 MD5sum: 2671e0e77eca46fa4008d7e2480ecb5b Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20131017-2~nd+1+nd13.10+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 4130 Depends: neurodebian-popularity-contest, psychtoolbox-3-lib (>= 3.0.11.20131017-2~nd+1+nd13.10+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20131017-2~nd+1+nd13.10+1.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libglew1.9, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libgstreamer-plugins-base0.10-0, libgstreamer0.10-0, libopenal1, libpciaccess0, libusb-1.0-0 (>= 2:1.0.9~), libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.11.20131017-2~nd+1+nd13.10+1_amd64.deb Size: 1353626 SHA256: 51875652cfe209539ac0ebf5c8da5d4e2402eeeb8ee86fc2b4a47553f32f107e SHA1: e4aca0ce45ed47a593425220966985f917e366dd MD5sum: 42c128c1827232a09c6c9356ddddb899 Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20131017-2~nd+1+nd13.10+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 1306 Depends: neurodebian-popularity-contest, octave-psychtoolbox-3 (>= 3.0.11.20131017-2~nd+1+nd13.10+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20131017-2~nd+1+nd13.10+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.11.20131017-2~nd+1+nd13.10+1_amd64.deb Size: 431834 SHA256: 345cc8940d5a4daf01ac02445ef8c291b5101f5ab868d8cba24955d9f23519fe SHA1: 180ea7188da7ed8eef09f2222ca94639165f173d MD5sum: a9fce260ddda0cc8e609f0d7ad4f3401 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3020 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 2053202 SHA256: 7b12702ada33f632b12b57a5da90204fcac521b236fd3a774438d185234e07ef SHA1: 85ee77b328f7bc2956fed87654d031d97751b333 MD5sum: 237db5e7a5c0c3b71c846a606078b129 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.