Package: fsl Version: 5.0.5-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 53 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.5-1~nd70+1_all.deb Size: 20416 SHA256: 31087cedf9683c872c5911eed5204470013e959544541d6cde8dd204834968ac SHA1: 6d8a5333ca9d85443ef1dfed52f93a142197dcd6 MD5sum: c8f2dcae30f9f767c2f8d161246a4797 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-core' package which replaces 'fsl'. It can safely be removed. Package: fsl-5.0 Source: fsl Version: 5.0.5-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 50 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.5-1~nd70+1_all.deb Size: 18950 SHA256: 4041091713cb9ee30a79499b5b9e106f62c8637bd0775b71322722eadd064129 SHA1: fe2ed7e811797721cfb2e182b4164ced27cdd495 MD5sum: 1ce281d669616175a5a1ba8de213aafd Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-core' package which replaces 'fsl-5.0'. It can safely be removed. Package: fsl-5.0-core Source: fsl Version: 5.0.5-1~nd70+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 37504 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk8.4 (>= 8.4.7), tcl8.4 (>= 8.4.7), bc, dc, python, fslview, libc6 (>= 2.11), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.1.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libgomp1 (>= 4.2.1), libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4) Recommends: fsl-5.0-doc (= 5.0.5-1~nd70+1), fsl-5.0-gpu (= 5.0.5-1~nd70+1), fsl-atlases Suggests: fsl-feeds, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.5-1~nd70+1_amd64.deb Size: 14333368 SHA256: 1c1039e0bd38cfd6a5f4fa8114123e79b7598cc20b75f0c36436ce2f5c0d9551 SHA1: 80e0ff67e2902783ad939671841db148fbbcef0e MD5sum: 77eccd4dc4419af2fa637f889d923ae4 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-doc Source: fsl Version: 5.0.5-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 5071 Recommends: fslview-doc, fsl-5.0-doc-wikiattachments Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.5-1~nd70+1_all.deb Size: 2374000 SHA256: e1c856a07ee7a77a4aa031562f36c89bb98e05fecd5e811d780acfdf7fea7b8d SHA1: 217e1995a9ea42431a775f884c29a527f6d8a5e9 MD5sum: d1aadde95103c174d67beecdca4c2615 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-5.0-gpu Source: fsl Version: 5.0.5-1~nd70+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 4394 Depends: fsl-5.0-core (= 5.0.5-1~nd70+1), libc6 (>= 2.4), libcuda1 (>= 260), libcudart4 (>= 4.0), libcurand4 (>= 3.2), libgcc1 (>= 1:4.1.1), libnewmat10ldbl, libnifti2, libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-gpu_5.0.5-1~nd70+1_amd64.deb Size: 1021056 SHA256: f52ff7f2b75afcb566f98c09d70629f74fc3e2808d72c9abb50c3d4399771d0c SHA1: 0d03ec94f2cc0de666e2ba306aa3bf52bb9633ea MD5sum: 44eb7ff7979a627e06b2fff2db7f841a Description: GPU-accelerated tools for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . This package provides accelerated versions of some FSL commands to utilize NVIDIA's CUDA toolkit. Package: fsl-core Source: fsl Version: 5.0.5-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 68 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.5-1~nd70+1_all.deb Size: 20186 SHA256: ccded2e9f7eee057fc652677ef1d4d77b2bbeda1891b6ef0f37b09453ad554ea SHA1: 14c97a42a80f1587c054ad08fcb306016690b0e4 MD5sum: f67c8351c9c10168ee235c57b545aa69 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. Package: fsl-doc-5.0 Source: fsl Version: 5.0.5-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 50 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.5-1~nd70+1_all.deb Size: 18950 SHA256: 59dbfcb8ab3e2bbd3c822a4ff32361d5c51cbd5dbe623e192bf73ef8f683af12 SHA1: 1ce6a1209f646db6dff600fa345752d9378fd698 MD5sum: f88419335ce8a2f3b0c62b3e4874d7f1 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. It can safely be removed. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.11.20131017-2~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.11.20131017-2~nd+1), psychtoolbox-3-common (>= 3.0.11.20131017-2~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.11.20131017-2~nd+1_all.deb Size: 3766 SHA256: e7e51b61fe2e591422e37002292d1c812df39c71b2ff2118753f48c2532c179b SHA1: 0ad4f458fba8abebb78bd6bda32a2fc557c5e840 MD5sum: 3049e949dec35a98e503f67fee7f5618 Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20131017-2~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 4130 Depends: neurodebian-popularity-contest, psychtoolbox-3-lib (>= 3.0.11.20131017-2~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20131017-2~nd+1.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libglew1.9, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libgstreamer-plugins-base0.10-0, libgstreamer0.10-0, libopenal1, libpciaccess0, libusb-1.0-0 (>= 2:1.0.9~), libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.11.20131017-2~nd+1_amd64.deb Size: 892918 SHA256: f402d31c04dc844e79916c5c93dd9c74305a5ed9d48a4a4222d532b95c8efcc9 SHA1: ebb8eeb704ceb88dbcef2b1aae839335881b75a1 MD5sum: 74bf36a3fbf237273959dc12f036d194 Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20131017-2~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 1306 Depends: neurodebian-popularity-contest, octave-psychtoolbox-3 (>= 3.0.11.20131017-2~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20131017-2~nd+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.11.20131017-2~nd+1_amd64.deb Size: 319758 SHA256: 424ad52869df17d63281ac8c8dbcfb93c7cf6e5ef5542378e8fabaaca848020e SHA1: 82521d2452a697cb271684ba02c3ab2ccb26c010 MD5sum: 4de13bcbb2bc58a73880989ec913be81 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3063 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd70+1_all.deb Size: 2051872 SHA256: c9772d066da29f69860ae42cbca9805917dbeb520fb1f7614c49531e47dc66d0 SHA1: 3533625c940936aec15a317cdaaa12adb9e00082 MD5sum: 9ffed1c52f0c7bba4c04bdb549847ed1 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.