Package: eeglab11-sampledata Source: eeglab11 Version: 11.0.0.0~b~dfsg.1-1~nd11.10+1+nd12.04+1+nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 8109 Depends: neurodebian-popularity-contest Priority: extra Section: science Filename: pool/main/e/eeglab11/eeglab11-sampledata_11.0.0.0~b~dfsg.1-1~nd11.10+1+nd12.04+1+nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 7224862 SHA256: b676b82109d135052588444785b36d65fe3e96cd7199cbbb0bd7c2c07d3cd801 SHA1: f9190f6dbe6d6596884363f4aeadd7181991eb43 MD5sum: 06ebb1802f177f2a117f1d51a2213ec5 Description: sample EEG data for EEGLAB tutorials EEGLAB is sofwware for processing continuous or event-related EEG or other physiological data. . This package provide some tutorial data files shipped with the EEGLAB distribution. Package: fail2ban Version: 0.8.11-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 525 Depends: neurodebian-popularity-contest, python:any (>= 2.7.1-0ubuntu2), lsb-base (>= 2.0-7) Recommends: iptables, whois, python-pyinotify Suggests: python-gamin, mailx, system-log-daemon Homepage: http://www.fail2ban.org Priority: optional Section: net Filename: pool/main/f/fail2ban/fail2ban_0.8.11-1~nd13.10+1_all.deb Size: 176912 SHA256: 8c211a9afaaf4847a4dd50b72622a5c5805f67b19162007df0a746c082617d0c SHA1: b401bf0e26bb45cf9f4721410c8d4c35fc5f2383 MD5sum: 4ff6bd1b562e28c47175467a8fe53d46 Description: ban hosts that cause multiple authentication errors Fail2ban monitors log files (e.g. /var/log/auth.log, /var/log/apache/access.log) and temporarily or persistently bans failure-prone addresses by updating existing firewall rules. Fail2ban allows easy specification of different actions to be taken such as to ban an IP using iptables or hostsdeny rules, or simply to send a notification email. . By default, it comes with filter expressions for various services (sshd, apache, qmail, proftpd, sasl etc.) but configuration can be easily extended for monitoring any other text file. All filters and actions are given in the config files, thus fail2ban can be adopted to be used with a variety of files and firewalls. Package: fslview-doc Source: fslview Version: 4.0.1-2~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2874 Depends: neurodebian-popularity-contest Homepage: http://www.fmrib.ox.ac.uk/fsl/fslview Priority: optional Section: doc Filename: pool/main/f/fslview/fslview-doc_4.0.1-2~nd13.04+1+nd13.10+1_all.deb Size: 2346584 SHA256: d18c868829872ad3b67c0902b9dba50a49c1b221a498c79efda662247520d444 SHA1: 0eee7201a822e7f6e330c233f732e29df7e2cfa1 MD5sum: 1fbf262f0226c131b9096afe8705b64b Description: Documentation for FSLView This package provides the online documentation for FSLView. . FSLView is part of FSL. Package: incf-nidash-oneclick-clients Source: incf-nidash-oneclick Version: 2.0-1~nd12.04+1+nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 28 Depends: neurodebian-popularity-contest, python (>= 2.5.0), python-dicom, dcmtk, python-httplib2 Homepage: http://xnat.incf.org/ Priority: extra Section: science Filename: pool/main/i/incf-nidash-oneclick/incf-nidash-oneclick-clients_2.0-1~nd12.04+1+nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 9792 SHA256: 0b9a6311f3505e3617a06a6c9c484f2d75b0c5d72c8399f677eda471fc8d0acd SHA1: 68241f8405acc62727278602c524900998fa8dc4 MD5sum: 27174485f0fac376de0ebe388d427929 Description: utility for pushing DICOM data to the INCF datasharing server A command line utility for anonymizing and sending DICOM data to the XNAT image database at the International Neuroinformatics Coordinating Facility (INCF). This tool is maintained by the INCF NeuroImaging DataSharing (NIDASH) task force. Package: ipython1x Version: 1.1.0+git7-gf5891e9-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 11748 Depends: neurodebian-popularity-contest, python-argparse, python-configobj, python-decorator, python-pexpect, python-simplegeneric, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2) Recommends: python-tornado (>= 2.1.0~), python-pygments, python-qt4, python-zmq, python-matplotlib Suggests: ipython1x-doc, python-gobject, python-gtk2, python-numpy, python-profiler Conflicts: ipython-common, python2.3-ipython, python2.4-ipython Replaces: ipython-common, python2.3-ipython, python2.4-ipython Homepage: http://ipython.org/ Priority: optional Section: python Filename: pool/main/i/ipython1x/ipython1x_1.1.0+git7-gf5891e9-1~nd13.10+1_all.deb Size: 4486488 SHA256: 6016a44c2c4ebb56d8df6ce5cc15cc7c12ab6d093667f1910829fc12ca964581 SHA1: 7a208528c1a006209745efb2e691c3b1b6770b0a MD5sum: 313e52e500fd07fe87d6e12893fa7fde Description: enhanced interactive Python shell IPython can be used as a replacement for the standard Python shell, or it can be used as a complete working environment for scientific computing (like Matlab or Mathematica) when paired with the standard Python scientific and numerical tools. It supports dynamic object introspections, numbered input/output prompts, a macro system, session logging, session restoring, complete system shell access, verbose and colored traceback reports, auto-parentheses, auto-quoting, and is embeddable in other Python programs. . This is a non-official, custom build of IPython post 0.11 with notebooks support. It provides IPython1X module thus not conflicting with system-wide installed IPython Package: ipython1x-doc Source: ipython1x Version: 1.1.0+git7-gf5891e9-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 10391 Depends: neurodebian-popularity-contest, libjs-jquery, ipython1x Homepage: http://ipython.org/ Priority: optional Section: doc Filename: pool/main/i/ipython1x/ipython1x-doc_1.1.0+git7-gf5891e9-1~nd13.10+1_all.deb Size: 4192434 SHA256: 6c1ed43bf785fc0278365207e66311c6cace48f4631178de5fcdc15fea6431cf SHA1: bd3d87ffc7b305c9db0ca716ad99fdc3c9949ede MD5sum: 120527fda1c679b4b209ed795f3c3a52 Description: enhanced interactive Python shell IPython can be used as a replacement for the standard Python shell, or it can be used as a complete working environment for scientific computing (like Matlab or Mathematica) when paired with the standard Python scientific and numerical tools. It supports dynamic object introspections, numbered input/output prompts, a macro system, session logging, session restoring, complete system shell access, verbose and colored traceback reports, auto-parentheses, auto-quoting, and is embeddable in other Python programs. . This package contains the documentation. . This is a non-official, custom build of IPython post 0.11 with workbooks support. It provides IPython1X module thus not conflicting with system-wide installed IPython Package: ipython1x-notebook Source: ipython1x Version: 1.1.0+git7-gf5891e9-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1 Depends: neurodebian-popularity-contest, ipython1x (>= 0.13.1~git33-gcfc5692-2~) Homepage: http://ipython.org/ Priority: extra Section: python Filename: pool/main/i/ipython1x/ipython1x-notebook_1.1.0+git7-gf5891e9-1~nd13.10+1_all.deb Size: 908 SHA256: 937c26f74dc38685ccda4a8278e7953f3b6c80aaebd36947fd876785a6429e68 SHA1: 34d85abfe2a419d600769382228b62f121a76b9d MD5sum: af008fba904dd966354b267c7819efb8 Description: enhanced interactive Python shell -- notebook dummy package This is a dummy package depending on ipython1x which ships notebook functionality inside. It is made so to stay in line to modularization of official ipython package in Debian. There is no real good reason to install this package. Package: ipython1x-parallel Source: ipython1x Version: 1.1.0+git7-gf5891e9-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1 Depends: neurodebian-popularity-contest, ipython1x (>= 0.13.1~git33-gcfc5692-2~) Homepage: http://ipython.org/ Priority: extra Section: oldlibs Filename: pool/main/i/ipython1x/ipython1x-parallel_1.1.0+git7-gf5891e9-1~nd13.10+1_all.deb Size: 836 SHA256: d031b9d628624c792764afb15e2e0c0f4f663064bef7b0045edb641106d09310 SHA1: e894ddc3eb3662df68d481f510b7a8251f29be93 MD5sum: 8a22a6f641780b0b77f58a614c4d26f0 Description: enhanced interactive Python shell This is a transitional package and can be safely removed after the installation is complete. Package: ipython1x-qtconsole Source: ipython1x Version: 1.1.0+git7-gf5891e9-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1 Depends: neurodebian-popularity-contest, ipython1x (>= 0.13.1~git33-gcfc5692-2~) Homepage: http://ipython.org/ Priority: extra Section: python Filename: pool/main/i/ipython1x/ipython1x-qtconsole_1.1.0+git7-gf5891e9-1~nd13.10+1_all.deb Size: 924 SHA256: 71f4ce8327f6abb548302e1b70ed8d1ea0c824b0bee5f6b65b8e7d0b19c678a4 SHA1: 89622b1042ff646e64e3334bebb09e4418c144ec MD5sum: 7aefa70e0eeab5e8034b8d0230e5551c Description: enhanced interactive Python shell -- notebook dummy package This is a dummy package depending on ipython1x which ships qt console functionality inside. It is made so to stay in line to modularization of the official ipython package in Debian. There is no real good reason to install this package. Package: mricron-data Source: mricron Version: 0.20130828.1~dfsg.1-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1678 Depends: neurodebian-popularity-contest Homepage: http://www.cabiatl.com/mricro/mricron/index.html Priority: extra Section: science Filename: pool/main/m/mricron/mricron-data_0.20130828.1~dfsg.1-1~nd13.04+1+nd13.10+1_all.deb Size: 1664274 SHA256: 68ce273dcde27c573053b0978397336aee2bd4bd411278f9950e11a9aac27989 SHA1: 3e484323149fadfcff8ba1c124dc23cb188c9cf6 MD5sum: 895c3045ff8a360f730cb00692214f7f Description: data files for MRIcron This is a GUI-based visualization and analysis tool for (functional) magnetic resonance imaging. MRIcron can be used to create 2D or 3D renderings of statistical overlay maps on brain anatomy images. Moreover, it aids drawing anatomical regions-of-interest (ROI), or lesion mapping, as well as basic analysis of functional timeseries (e.g. creating plots of peristimulus signal-change). . This package provides data files for MRIcron, such as brain atlases, anatomy, and color schemes. Package: mricron-doc Source: mricron Version: 0.20130828.1~dfsg.1-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 980 Depends: neurodebian-popularity-contest Homepage: http://www.cabiatl.com/mricro/mricron/index.html Priority: extra Section: doc Filename: pool/main/m/mricron/mricron-doc_0.20130828.1~dfsg.1-1~nd13.04+1+nd13.10+1_all.deb Size: 735992 SHA256: e5a580a7bae121b13d1e22d622c6de9466ca7e01fe5abc460fe3285906c721f5 SHA1: f39199a65bb18cded064d3123319184a4c9e6878 MD5sum: 92dbcb21cb1674db34d549b65a2c61d7 Description: data files for MRIcron This is a GUI-based visualization and analysis tool for (functional) magnetic resonance imaging. MRIcron can be used to create 2D or 3D renderings of statistical overlay maps on brain anatomy images. Moreover, it aids drawing anatomical regions-of-interest (ROI), or lesion mapping, as well as basic analysis of functional timeseries (e.g. creating plots of peristimulus signal-change). . This package provides documentation for MRIcron in HTML format. Package: mrtrix-doc Source: mrtrix Version: 0.2.11-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3488 Depends: neurodebian-popularity-contest Homepage: http://www.brain.org.au/software/mrtrix Priority: extra Section: doc Filename: pool/main/m/mrtrix/mrtrix-doc_0.2.11-1~nd13.04+1+nd13.10+1_all.deb Size: 3315566 SHA256: 71442f92e14e7d4a7ede19192c4f90b7b499f2d970d23f243034a52a035cb1e9 SHA1: 93ff9dbf790cd956cdab14959d4a968a5145ba5a MD5sum: d62cbb6f62b76dbb3c632b95ec797787 Description: documentation for mrtrix Set of tools to perform diffusion-weighted MRI white matter tractography of the brain in the presence of crossing fibres, using Constrained Spherical Deconvolution, and a probabilisitic streamlines algorithm. Magnetic resonance images in DICOM, ANALYZE, or uncompressed NIfTI format are supported. . This package provides the documentation in HTML format. Package: neurodebian-desktop Source: neurodebian Version: 0.32~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 142 Depends: ssh-askpass-gnome | ssh-askpass, desktop-base, gnome-icon-theme, neurodebian-popularity-contest Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-desktop_0.32~nd13.10+1_all.deb Size: 115540 SHA256: 9ba5d4dabb6e93f31272b3b486f15ac6b076af64cf23bf39344807b8dfed0d4c SHA1: 28c84332645d7e4341bc5337e9ea93b556a492d6 MD5sum: d68aaaccaf699b6dd38e1882de06e1e5 Description: neuroscience research environment This package contains NeuroDebian artwork (icons, background image) and a NeuroDebian menu featuring most popular neuroscience tools automatically installed upon initial invocation. Package: neurodebian-dev Source: neurodebian Version: 0.32~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 6842 Depends: devscripts, cowbuilder, neurodebian-keyring Recommends: python, zerofree, moreutils, time, ubuntu-keyring, debian-archive-keyring, apt-utils Suggests: virtualbox-ose, virtualbox-ose-fuse Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-dev_0.32~nd13.10+1_all.deb Size: 6433068 SHA256: aa1c7d670d5242fb0a926b76a4da98688b0241afbd0930920ed750c3fee6db63 SHA1: 0db76d411ca7c35145284885f1beca74c6763675 MD5sum: feb4c2acd0742deb03aa350b145ad9b2 Description: NeuroDebian development tools neuro.debian.net sphinx website sources and development tools used by NeuroDebian to provide backports for a range of Debian/Ubuntu releases. Package: neurodebian-guest-additions Source: neurodebian Version: 0.32~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 107 Pre-Depends: virtualbox-ose-guest-utils, virtualbox-ose-guest-x11, virtualbox-ose-guest-dkms Depends: sudo, neurodebian-desktop, gdm | lightdm, zenity Recommends: chromium-browser, update-manager-gnome, update-notifier Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-guest-additions_0.32~nd13.10+1_all.deb Size: 15362 SHA256: 87323f095aec2a104af3633b311a231531765476441b4e34dd49f40c426537cc SHA1: 6204775b5aee5af8692750f2011b1311cb16c0d5 MD5sum: 3473a9e49831da14507f033d87a05481 Description: NeuroDebian guest additions (DO NOT INSTALL OUTSIDE VIRTUALBOX) This package configures a Debian installation as a guest operating system in a VirtualBox-based virtual machine for NeuroDebian. . DO NOT install this package unless you know what you are doing! For example, installation of this package relaxes several security mechanisms. Package: neurodebian-keyring Source: neurodebian Version: 0.32~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 8 Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-keyring_0.32~nd13.10+1_all.deb Size: 7626 SHA256: 971b8c7f9c290670165b5b4480681aa056ad296d0a66d4b7f5b13699f898dcf3 SHA1: 4520e7bcbbdedcf856195ca443fef0bc0e14a99f MD5sum: 84091b28d29885a610724d371af9321c Description: GnuPG archive keys of the NeuroDebian archive The NeuroDebian project digitally signs its Release files. This package contains the archive keys used for that. Package: neurodebian-popularity-contest Source: neurodebian Version: 0.32~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 7 Depends: popularity-contest Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-popularity-contest_0.32~nd13.10+1_all.deb Size: 6838 SHA256: eb7c13a98d2d0e64a57475dfb1af249c082531254bcdf62b676c43f2198918c9 SHA1: a98d5388ac8f622a3e72444192feb4e72a24f744 MD5sum: cf62e0d246ae30891e4df6332e4e3ed3 Description: Helper for NeuroDebian popularity contest submissions This package is a complement to the generic popularity-contest package to enable anonymous submission of usage statistics to NeuroDebian in addition to the popcon submissions to the underlying distribution (e.g. Debian or Ubuntu) popcon server. . Your participation in popcon is important for following reasons: - Popular packages receive more attention from developers, bugs are fixed faster and updates are provided quicker. - Assure that we do not drop support for a previous release of Debian or Ubuntu while are active users. - User statistics could be used by upstream research software developers to acquire funding for continued development. . It has an effect only if you have decided to participate in the Popularity Contest of your distribution, i.e. Debian or Ubuntu. You can always enable or disable your participation in popcon by running 'dpkg-reconfigure popularity-contest' as root. Package: nifti2dicom-data Source: nifti2dicom Version: 0.4.6-2~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 606 Depends: neurodebian-popularity-contest Homepage: https://github.com/biolab-unige/nifti2dicom Priority: optional Section: science Filename: pool/main/n/nifti2dicom/nifti2dicom-data_0.4.6-2~nd13.04+1+nd13.10+1_all.deb Size: 615226 SHA256: 0f0a456de3bee8393c788a8e386db5850e1114f6d0888aa2962aeaca3285701f SHA1: 1348f2d5aa245a47b7e921228df9d88801ea0037 MD5sum: 56b8ed8c1d235d57922f2fbda44bf0ed Description: data files for nifti2dicom This package contains architecture-independent supporting data files required for use with nifti2dicom, such as such as documentation, icons, and translations. Package: nuitka Version: 0.4.6.2+ds-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1904 Depends: neurodebian-popularity-contest, g++-4.6 (>= 4.6.1) | g++-4.5 | g++-4.4 | clang (>= 3.0), scons (>= 2.0.0), python-dev (>= 2.6.6-2), python:any (>= 2.7.1-0ubuntu2) Recommends: python-lxml (>= 2.3), python-qt4 (>= 4.8.6) Suggests: ccache Homepage: http://nuitka.net Priority: optional Section: python Filename: pool/main/n/nuitka/nuitka_0.4.6.2+ds-1~nd13.10+1_all.deb Size: 509766 SHA256: 899e9ef6f5bc3fae92f6c44b2a1fe21dea3b2f8160f5e44749b498dad0d9ea0a SHA1: 010f177362353b9fc10962c7190205f52d83f549 MD5sum: 64fe93bc44017c8327d194d5537d15de Description: Python compiler with full language support and CPython compatibility This Python compiler achieves full language compatibility and compiles Python code into compiled objects that are not second class at all. Instead they can be used in the same way as pure Python objects. Package: opensesame Version: 0.27.4-2~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 26639 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-qt4, python-pygame (>= 1.8.1~), python-numpy (>= 1.3.0~), python-qscintilla2, gnome-icon-theme Recommends: python-serial (>= 2.3~), psychopy (>= 1.64.0), python-pyaudio (>= 0.2.4), python-imaging (>= 1.1.7), python-opengl (>= 3.0.1), expyriment (>= 0.5.2), ipython-qtconsole (>= 0.12), python-markdown Homepage: http://www.cogsci.nl/software/opensesame Priority: extra Section: science Filename: pool/main/o/opensesame/opensesame_0.27.4-2~nd13.04+1+nd13.10+1_all.deb Size: 25359292 SHA256: 7eb6ad30eac4d0899910debe19d8f7d67bc93d31570781782b9c297f0ed84053 SHA1: 1f09336470b48636de42f67e545284e24f6b15ef MD5sum: 076b71a8a142d25cbc32e85c9e11720f Description: graphical experiment builder for the social sciences This graphical environment provides an easy to use, point-and-click interface for creating psychological experiments. In addition to a powerful sketchpad for creating visual stimuli, OpenSesame features a sampler and synthesizer for sound playback. For more complex tasks, OpenSesame supports Python scripting using the built-in editor with syntax highlighting. Package: psychtoolbox-3-common Source: psychtoolbox-3 Version: 3.0.11.20131017.dfsg1-2~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 49635 Depends: neurodebian-popularity-contest Recommends: subversion Suggests: gnuplot Homepage: http://psychtoolbox.org Priority: extra Section: science Filename: pool/main/p/psychtoolbox-3/psychtoolbox-3-common_3.0.11.20131017.dfsg1-2~nd13.10+1_all.deb Size: 19937316 SHA256: 1d633396593cd68aee1f7aedfd2f627c93fe031b87bee46eca446b19e5dbbc30 SHA1: e91de726712bc8e2c5710b1afb72e7e533c053c0 MD5sum: 37b535b8bc0512f543a8b4b06df40d98 Description: toolbox for vision research -- arch/interpreter independent part Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains architecture independent files (such as .m scripts) Package: python-brian Source: brian Version: 1.4.1-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2336 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-brian-lib (>= 1.4.1-1~nd13.04+1+nd13.10+1), python-matplotlib (>= 0.90.1), python-numpy (>= 1.3.0), python-scipy (>= 0.7.0) Recommends: python-sympy Suggests: python-brian-doc, python-nose, python-cherrypy Homepage: http://www.briansimulator.org/ Priority: extra Section: python Filename: pool/main/b/brian/python-brian_1.4.1-1~nd13.04+1+nd13.10+1_all.deb Size: 549212 SHA256: 988ae070c4a1f6ff509598736733a666ccf337407b9f1b54fe51dcc41f453071 SHA1: c0d825559c7fa6cc94df99326cd0bf135b9af3d2 MD5sum: 19b10c71f6878e6e0ca5eea1637284fe Description: simulator for spiking neural networks Brian is a clock-driven simulator for spiking neural networks. It is designed with an emphasis on flexibility and extensibility, for rapid development and refinement of neural models. Neuron models are specified by sets of user-specified differential equations, threshold conditions and reset conditions (given as strings). The focus is primarily on networks of single compartment neuron models (e.g. leaky integrate-and-fire or Hodgkin-Huxley type neurons). Features include: - a system for specifying quantities with physical dimensions - exact numerical integration for linear differential equations - Euler, Runge-Kutta and exponential Euler integration for nonlinear differential equations - synaptic connections with delays - short-term and long-term plasticity (spike-timing dependent plasticity) - a library of standard model components, including integrate-and-fire equations, synapses and ionic currents - a toolbox for automatically fitting spiking neuron models to electrophysiological recordings Package: python-brian-doc Source: brian Version: 1.4.1-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 6810 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-brian Homepage: http://www.briansimulator.org/ Priority: extra Section: doc Filename: pool/main/b/brian/python-brian-doc_1.4.1-1~nd13.04+1+nd13.10+1_all.deb Size: 2247326 SHA256: 02613c13a722df13156e9ae18dfaa9328810fca303950ba19a1356da2a77a3a7 SHA1: 4341f8754a618702eb2f745017fc50c57b88b2e6 MD5sum: 90d9953badd70e123284cef6b7fb2904 Description: simulator for spiking neural networks - documentation Brian is a clock-driven simulator for spiking neural networks. . This package provides user's manual (in HTML format), examples and demos. Package: python-joblib Source: joblib Version: 0.7.1-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 182 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0) Recommends: python-numpy, python-nose, python-simplejson Homepage: http://packages.python.org/joblib/ Priority: optional Section: python Filename: pool/main/j/joblib/python-joblib_0.7.1-1~nd13.04+1+nd13.10+1_all.deb Size: 54902 SHA256: 8da3ca02ba5ac7b0ef34f0b086d3e687788a3ac689f9d9ee53d36ec03c720928 SHA1: 89ecf1f16e6ef9b552359f960e5a4ebe10c3a8fa MD5sum: 896e7ee9f14eff60a67380bde75474f3 Description: tools to provide lightweight pipelining in Python Joblib is a set of tools to provide lightweight pipelining in Python. In particular, joblib offers: - transparent disk-caching of the output values and lazy re-evaluation (memoize pattern) - easy simple parallel computing - logging and tracing of the execution . Joblib is optimized to be fast and robust in particular on large, long-running functions and has specific optimizations for numpy arrays. Package: python-mdp Source: mdp Version: 3.3+git6-g7bbd889-1~nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1495 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), python-numpy Recommends: python-scipy, python-libsvm, python-joblib, python-scikits-learn | python-sklearn, python-pp Suggests: python-py, shogun-python-modular Enhances: python-mvpa Homepage: http://mdp-toolkit.sourceforge.net/ Priority: optional Section: python Filename: pool/main/m/mdp/python-mdp_3.3+git6-g7bbd889-1~nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 478670 SHA256: dcbf8dcbd35c93951698aa8a700355c7f7df66000b6e7e4b42432fef2a273b63 SHA1: 47eb8ef49afe92e183de028ecbe170ccc8227fad MD5sum: 3e08fab66beaacec7b7071b569c74ded Description: Modular toolkit for Data Processing Python data processing framework for building complex data processing software by combining widely used machine learning algorithms into pipelines and networks. Implemented algorithms include: Principal Component Analysis (PCA), Independent Component Analysis (ICA), Slow Feature Analysis (SFA), Independent Slow Feature Analysis (ISFA), Growing Neural Gas (GNG), Factor Analysis, Fisher Discriminant Analysis (FDA), and Gaussian Classifiers. . This package contains MDP for Python 2. Package: python-mpi4py-doc Source: mpi4py Version: 1.3.1+hg20131106-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 256 Depends: neurodebian-popularity-contest, libjs-sphinxdoc (>= 1.0) Suggests: python-mpi4py Homepage: http://code.google.com/p/mpi4py/ Priority: extra Section: doc Filename: pool/main/m/mpi4py/python-mpi4py-doc_1.3.1+hg20131106-1~nd13.10+1_all.deb Size: 73120 SHA256: 0b134f816eac4329b2752f7b2e16c6956ecd2ffc949074ee1c9eb390675b9e18 SHA1: 81d29c74376e92ec5c3386727d44258ffba85f8a MD5sum: d041dee2f5707ed612450c5d7b65f545 Description: bindings of the MPI standard -- documentation MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. . mpi4py is constructed on top of the MPI-1/MPI-2 specification and provides an object oriented interface which closely follows MPI-2 C++ bindings. It supports point-to-point (sends, receives) and collective (broadcasts, scatters, gathers) communications of any picklable Python object as well as optimized communications of Python object exposing the single-segment buffer interface (NumPy arrays, builtin bytes/string/array objects). . This package provides HTML rendering of the user's manual. Package: python-neo Source: neo Version: 0.3.1-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2485 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), python-numpy (>= 1:1.3~), python-quantities (>= 0.9.0~) Recommends: python-scipy (>= 0.8~), python-tables (>= 2.2~), libjs-jquery, libjs-underscore Suggests: python-nose Homepage: http://neuralensemble.org/trac/neo Priority: extra Section: python Filename: pool/main/n/neo/python-neo_0.3.1-1~nd13.04+1+nd13.10+1_all.deb Size: 1441986 SHA256: ec381fea8a1c2ad6d8301f88c0ca4362cbbbab180c6e618772181f5b4055fd62 SHA1: 7ae0814b66bf4f821fbb042de12c70a6cd53b3e0 MD5sum: cfd02e2d5a37dcf504472f5f31e11f67 Description: Python IO library for electrophysiological data formats NEO stands for Neural Ensemble Objects and is a project to provide common classes and concepts for dealing with electro-physiological (in vivo and/or simulated) data to facilitate collaborative software/algorithm development. In particular Neo provides: a set a classes for data representation with precise definitions, an IO module with a simple API, documentation, and a set of examples. . NEO offers support for reading data from numerous proprietary file formats (e.g. Spike2, Plexon, AlphaOmega, BlackRock, Axon), read/write support for various open formats (e.g. KlustaKwik, Elan, WinEdr, WinWcp, PyNN), as well as support common file formats, such as HDF5 with Neo-structured content (NeoHDF5, NeoMatlab). . Neo's IO facilities can be seen as a pure-Python and open-source Neuroshare replacement. Package: python-neurosynth Source: neurosynth Version: 0.3-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 83 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), python-numpy, python-scipy, python-nibabel, python-ply Recommends: python-nose, fsl-mni152-templates Suggests: python-testkraut Homepage: http://neurosynth.org Priority: extra Section: python Filename: pool/main/n/neurosynth/python-neurosynth_0.3-1~nd13.04+1+nd13.10+1_all.deb Size: 32584 SHA256: e38eecc0a3733f22718924755061092da20b4ce592bc1f0044cc0fcd3b5d946e SHA1: acb8d58022eca092a686c7665b5225fca8074794 MD5sum: 3eedb70c2ed5b4a73f58c6b2981af4f0 Description: large-scale synthesis of functional neuroimaging data NeuroSynth is a platform for large-scale, automated synthesis of functional magnetic resonance imaging (fMRI) data extracted from published articles. This Python module at the moment provides functionality for processing the database of collected terms and spatial coordinates to generate associated spatial statistical maps. Package: python-nibabel Source: nibabel Version: 1.3.0-1~nd12.04+1+nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4152 Depends: neurodebian-popularity-contest, python (>= 2.5), python-support (>= 0.90.0), python-numpy, python-scipy Recommends: python-dicom, python-fuse Suggests: python-nibabel-doc Provides: python2.7-nibabel Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: python Filename: pool/main/n/nibabel/python-nibabel_1.3.0-1~nd12.04+1+nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 1816464 SHA256: 1e268bf6e0aedbb094d99515235bca7859435018effc35b32c1ad61bc8f45576 SHA1: b446856aaabf44b569c5fb168697b97baafc6fb2 MD5sum: 9fc3310c254316621359200032f71b23 Description: Python bindings to various neuroimaging data formats NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. . This package also provides a commandline tools: . - dicomfs - FUSE filesystem on top of a directory with DICOMs - nib-ls - 'ls' for neuroimaging files - parrec2nii - for conversion of PAR/REC to NIfTI images Python-Version: 2.7 Package: python-nibabel-doc Source: nibabel Version: 1.3.0-1~nd12.04+1+nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2446 Depends: neurodebian-popularity-contest, libjs-jquery Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: doc Filename: pool/main/n/nibabel/python-nibabel-doc_1.3.0-1~nd12.04+1+nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 441902 SHA256: 024cc31c57fad25b7ece5bf111183562ed9f306c69b9c615ada8252c8ae51f5f SHA1: 34c515cf5d1ec4eda26a1be813c65d420e3f22a0 MD5sum: 282caebc75ef0933a993491196a60143 Description: documentation for NiBabel NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. . This package provides the documentation in HTML format. Package: python-openpyxl Source: openpyxl Version: 1.7.0+ds1-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 452 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0) Recommends: python-nose, python-pil, python-imaging Homepage: http://bitbucket.org/ericgazoni/openpyxl/ Priority: optional Section: python Filename: pool/main/o/openpyxl/python-openpyxl_1.7.0+ds1-1~nd13.10+1_all.deb Size: 91942 SHA256: 45e03738ea43ee24a77af63a0910957f19fed443bdb9fa5f0fbf8d0505002c43 SHA1: bb8bbd20152df002810b7998237cdb1ef04c7a73 MD5sum: 5dc3c2964ab771ebebbd199b4b15c60e Description: module to read/write OpenXML xlsx/xlsm files Openpyxl is a pure Python module to read/write Excel 2007 (OpenXML) xlsx/xlsm files. Package: python-patsy Source: patsy Version: 0.2.1-2~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 542 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), python-numpy Recommends: python-pandas Suggests: python-patsy-doc Homepage: http://github.com/pydata/patsy Priority: optional Section: python Filename: pool/main/p/patsy/python-patsy_0.2.1-2~nd13.10+1_all.deb Size: 141566 SHA256: 129dbb8c395d3ec89e03e9a07c950a52657450af33b3a29987f9643a54ca5427 SHA1: bf09927d1ada6b8c4fa217cb8931cff0a5f27b98 MD5sum: 1e7166dbc44ab5325bf9e4c1bafe79c0 Description: statistical models in Python using symbolic formulas patsy is a Python library for describing statistical models (especially linear models, or models that have a linear component) and building design matrices. . This package contains the Python 2 version. Package: python-patsy-doc Source: patsy Version: 0.2.1-2~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 827 Depends: neurodebian-popularity-contest, libjs-jquery, libjs-underscore Suggests: python-patsy Homepage: http://github.com/pydata/patsy Priority: optional Section: doc Filename: pool/main/p/patsy/python-patsy-doc_0.2.1-2~nd13.10+1_all.deb Size: 271938 SHA256: 961ceeb48ffbeaaff905d26aee5fc323e3f1b06cc466cd8a349f03daaf930aed SHA1: 553e1c06cd178a1c78962fcce0903dec8d2a5e5a MD5sum: b31d6af765cda6ad2f0ff8ff085917cd Description: documentation and examples for patsy This package contains documentation and example scripts for python-patsy. Package: python-pyepl-common Source: pyepl Version: 1.1.0+git12-g365f8e3-2~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 813 Depends: neurodebian-popularity-contest, python Homepage: http://pyepl.sourceforge.net/ Priority: optional Section: python Filename: pool/main/p/pyepl/python-pyepl-common_1.1.0+git12-g365f8e3-2~nd13.10+1_all.deb Size: 818248 SHA256: 9ce8e6041a5deeccea8c28454166623b53d9a571d442a63bc8844c07dd698293 SHA1: 90dc97067b797c017c9da331c41ed24072f8d156 MD5sum: d3ec7da2336f2e9e5ab0cff98c32ebaf Description: module for coding psychology experiments in Python PyEPL is a stimuli delivery and response registration toolkit to be used for generating psychology (as well as neuroscience, marketing research, and other) experiments. . It provides - presentation: both visual and auditory stimuli - responses registration: both manual (keyboard/joystick) and sound (microphone) time-stamped - sync-pulsing: synchronizing your behavioral task with external acquisition hardware - flexibility of encoding various experiments due to the use of Python as a description language - fast execution of critical points due to the calls to linked compiled libraries . This toolbox is here to be an alternative for a widely used commercial product E'(E-Prime) . This package provides common files such as images. Package: python-pynn Source: pynn Version: 0.7.5-1~nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 763 Depends: neurodebian-popularity-contest, python (>= 2.5), python-support (>= 0.90.0) Recommends: python-jinja2, python-cheetah Suggests: python-neuron, python-brian, python-csa Homepage: http://neuralensemble.org/trac/PyNN Priority: extra Section: python Filename: pool/main/p/pynn/python-pynn_0.7.5-1~nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 175892 SHA256: 0490096bb6a4e6d5ed2ec0e77261346c947d46d28d86acd3bb617c35ad3f10d2 SHA1: 0573a0e1d66e53f5af548774aae5578cc3346cc3 MD5sum: 908111812c3b5221360aff3852de45a8 Description: simulator-independent specification of neuronal network models PyNN allows for coding a model once and run it without modification on any simulator that PyNN supports (currently NEURON, NEST, PCSIM and Brian). PyNN translates standard cell-model names and parameter names into simulator-specific names. Package: python-pyxnat Source: pyxnat Version: 0.9.1+git39-g96bf069-1~nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 862 Depends: neurodebian-popularity-contest, python-lxml, python-simplejson, python-httplib2 (>= 0.7.0) Recommends: python-networkx, python-matplotlib Homepage: http://packages.python.org/pyxnat/ Priority: extra Section: python Filename: pool/main/p/pyxnat/python-pyxnat_0.9.1+git39-g96bf069-1~nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 190426 SHA256: 5854904257cb3119ee3d4389a93ef91f6d0b09cb8761ad8202ad2871c93c79b5 SHA1: ab34bd5639fc33e6891167d65f60d00d368405b5 MD5sum: 3e607b3d81f724a53cce9d8e07b15a74 Description: Interface to access neuroimaging data on XNAT servers pyxnat is a simple Python library that relies on the REST API provided by the XNAT platform since its 1.4 version. XNAT is an extensible database for neuroimaging data. The main objective is to ease communications with an XNAT server to plug-in external tools or Python scripts to process the data. It features: . - resources browsing capabilities - read and write access to resources - complex searches - disk-caching of requested files and resources Package: python-scikits-learn Source: scikit-learn Version: 0.14.1-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 35 Depends: neurodebian-popularity-contest, python-sklearn Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: oldlibs Filename: pool/main/s/scikit-learn/python-scikits-learn_0.14.1-1~nd13.04+1+nd13.10+1_all.deb Size: 33394 SHA256: c5c4921959294695cc1786c21f6a4221e9643c4a37dd2eb00c4fde018b09c98e SHA1: 69e189ae57b2d9d71d6163d3cad67ac43cc41b07 MD5sum: 3d82217021f148a186e7a70eabaea5ad Description: transitional compatibility package for scikits.learn -> sklearn migration Provides old namespace (scikits.learn) and could be removed if dependent code migrated to use sklearn for clarity of the namespace. Package: python-scikits.statsmodels Source: statsmodels Version: 0.5.0-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 9 Depends: neurodebian-popularity-contest, python-statsmodels Homepage: http://statsmodels.sourceforge.net/ Priority: extra Section: oldlibs Filename: pool/main/s/statsmodels/python-scikits.statsmodels_0.5.0-1~nd13.04+1+nd13.10+1_all.deb Size: 5690 SHA256: 32c363d5c9c614e8dc79f3e4416b5f5f130a1a14bc01a655340725b9debc7732 SHA1: 31cc26d464f24154400ac5af0077098c538e3903 MD5sum: a0418afa93e68377deca41d04268bd03 Description: transitional compatibility package for statsmodels migration Provides old namespace (scikits.statsmodels) and could be removed if dependent code migrated to use statsmodels for clarity of the namespace. Package: python-skimage Source: skimage Version: 0.9.3-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 6267 Depends: neurodebian-popularity-contest, libfreeimage3, python-numpy, python-scipy (>= 0.10), python-skimage-lib (>= 0.9.3-1~nd13.10+1), python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2) Recommends: python-imaging, python-pil, python-matplotlib (>= 1.0), python-nose, python-qt4 Suggests: python-opencv, python-skimage-doc Homepage: http://scikit-image.org Priority: optional Section: python Filename: pool/main/s/skimage/python-skimage_0.9.3-1~nd13.10+1_all.deb Size: 4538212 SHA256: 38ce12bcda96fb048603a041bf97348639c933fe350844078531e0b0b0325e8a SHA1: 1326d280a0d3bd379aeabf6d2fea67d8384b150e MD5sum: ffd316ff9cf30d8cd16d769688403f46 Description: Python modules for image processing scikit-image is a collection of image processing algorithms for Python. It performs tasks such as image loading, filtering, morphology, segmentation, color conversions, and transformations. . This package provides the Python 2 module. Package: python-skimage-doc Source: skimage Version: 0.9.3-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 17726 Depends: neurodebian-popularity-contest, libjs-sphinxdoc (>= 1.0) Suggests: python-skimage Homepage: http://scikit-image.org Priority: optional Section: doc Filename: pool/main/s/skimage/python-skimage-doc_0.9.3-1~nd13.10+1_all.deb Size: 14620090 SHA256: 01aafb0fe1ee85f69bd722c23a4b72f003261bd8511eacfc811590bb5249b116 SHA1: f049087ae92a499a52955ad443bbe99b6e0344af MD5sum: 1f9af2c36987770895b8dc2ca67b25ac Description: Documentation and examples for scikit-image This package contains documentation and example scripts for python-skimage. Package: python-sklearn Source: scikit-learn Version: 0.14.1-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3549 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), python-numpy, python-scipy, python-sklearn-lib (>= 0.14.1-1~nd13.04+1+nd13.10+1), python-joblib (>= 0.4.5) Recommends: python-nose, python-matplotlib Suggests: python-dap, python-scikits-optimization, python-sklearn-doc, ipython Enhances: python-mdp, python-mvpa2 Breaks: python-scikits-learn (<< 0.9~) Replaces: python-scikits-learn (<< 0.9~) Provides: python2.7-sklearn Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: python Filename: pool/main/s/scikit-learn/python-sklearn_0.14.1-1~nd13.04+1+nd13.10+1_all.deb Size: 1103724 SHA256: e9dd3918afc487965fa705fcf6833913aeab546ec8360f0f7dd40f476e96e382 SHA1: 907583b96f7ca554661469323cdd9d604f0a31be MD5sum: 682700752ca3096fbfef096744e44581 Description: Python modules for machine learning and data mining scikit-learn is a collection of Python modules relevant to machine/statistical learning and data mining. Non-exhaustive list of included functionality: - Gaussian Mixture Models - Manifold learning - kNN - SVM (via LIBSVM) Package: python-sklearn-doc Source: scikit-learn Version: 0.14.1-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 579 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-sklearn Conflicts: python-scikits-learn-doc Replaces: python-scikits-learn-doc Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: doc Filename: pool/main/s/scikit-learn/python-sklearn-doc_0.14.1-1~nd13.04+1+nd13.10+1_all.deb Size: 190084 SHA256: a8ff6e017748e6a98c998dc6f9967700c97ad590da834c76fe4f1f340340bd35 SHA1: d84325dd92092e8afc55efd278b283734b37de2a MD5sum: e613e6e4a1d3fd2bb50f2d8d7c0ac6db Description: documentation and examples for scikit-learn This package contains documentation and example scripts for python-sklearn. Package: python-spyderlib Source: spyder Version: 2.2.5+dfsg-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4009 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), libjs-sphinxdoc (>= 1.0), libjs-jquery, libjs-mathjax, python-qt4 Recommends: ipython-qtconsole, pep8, pyflakes (>= 0.5.0), pylint, python-matplotlib, python-numpy, python-psutil (>= 0.3.0), python-rope, python-scipy, python-sphinx Suggests: tortoisehg, gitk Breaks: spyder (<< 2.0.12-1) Replaces: spyder (<< 2.0.12-1) Provides: python2.7-spyderlib Homepage: http://code.google.com/p/spyderlib/ Priority: extra Section: python Filename: pool/main/s/spyder/python-spyderlib_2.2.5+dfsg-1~nd13.10+1_all.deb Size: 1847912 SHA256: 5901bcb679c7ab73afcc6a5ba4e91c7d8e5f0b26e89da7dfc808ebd2efa321dc SHA1: fd5f1fc3a2f2efdd2910acf381322602cd2ae029 MD5sum: 50f033bac3cde622865ed80cb0137101 Description: python IDE for scientists Originally written to design Spyder (the Scientific PYthon Development EnviRonment), the spyderlib Python library provides ready-to-use pure-Python widgets: source code editor with syntax highlighting and code introspection/analysis features, NumPy array editor, dictionary editor, Python console, etc. It's based on the Qt Python binding module PyQt4 (and is compatible with PySide since v2.2). Package: python-spykeutils Source: spykeutils Version: 0.4.0-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2018 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), python-scipy, python-quantities, python-neo (>= 0.2.1), python-nose, python-sphinx Recommends: python-guidata, python-guiqwt, python-tables, libjs-jquery, libjs-underscore, python-sklearn (>= 0.11), python-joblib (>= 0.4.5) Provides: python2.7-spykeutils Homepage: https://github.com/rproepp/spykeutils Priority: extra Section: python Filename: pool/main/s/spykeutils/python-spykeutils_0.4.0-1~nd13.04+1+nd13.10+1_all.deb Size: 401644 SHA256: 602a18a5f0d14a20169f4ee7aed21ce25645fcfe8d8668731c99a71b25f1b2b2 SHA1: 6a95e964f341f0950776a46e9abad5cc30a36c82 MD5sum: b1e989f4caccc9d2ef07a86391511353 Description: utilities for analyzing electrophysiological data spykeutils is a Python library for analyzing and plotting data from neurophysiological recordings. It can be used by itself or in conjunction with Spyke Viewer, a multi-platform GUI application for navigating electrophysiological datasets. Package: python-statsmodels Source: statsmodels Version: 0.5.0-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 20496 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), python-numpy, python-scipy, python-statsmodels-lib (>= 0.5.0-1~nd13.04+1+nd13.10+1), python-patsy Recommends: python-pandas, python-matplotlib, python-nose, python-joblib Conflicts: python-scikits-statsmodels, python-scikits.statsmodels (<< 0.4) Replaces: python-scikits-statsmodels, python-scikits.statsmodels (<< 0.4) Provides: python2.7-statsmodels Homepage: http://statsmodels.sourceforge.net/ Priority: extra Section: python Filename: pool/main/s/statsmodels/python-statsmodels_0.5.0-1~nd13.04+1+nd13.10+1_all.deb Size: 4690538 SHA256: 38a545728cb1df2d44d1fc3579354ddfe8b89c5f207ece0cd3b2b68175730d29 SHA1: 95347b8acb0ef160eea8eb223ef7ec8d4d46f0ed MD5sum: d7b2743076ae1cc2f1aadfa920e3b4ec Description: Python module for the estimation of statistical models statsmodels Python module provides classes and functions for the estimation of several categories of statistical models. These currently include linear regression models, OLS, GLS, WLS and GLS with AR(p) errors, generalized linear models for six distribution families and M-estimators for robust linear models. An extensive list of result statistics are available for each estimation problem. Package: python-statsmodels-doc Source: statsmodels Version: 0.5.0-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 31202 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-statsmodels Conflicts: python-scikits-statsmodels-doc, python-scikits.statsmodels-doc Replaces: python-scikits-statsmodels-doc, python-scikits.statsmodels-doc Homepage: http://statsmodels.sourceforge.net/ Priority: extra Section: doc Filename: pool/main/s/statsmodels/python-statsmodels-doc_0.5.0-1~nd13.04+1+nd13.10+1_all.deb Size: 9240594 SHA256: afc8c22ea8bad165091cb11c971caaf688a39748726afc7430379266cbd8220a SHA1: d7f880340bf05c73be55fe618e1ce0706681724a MD5sum: 8a8961c09b31992954ac76ce98daf033 Description: documentation and examples for statsmodels This package contains HTML documentation and example scripts for python-statsmodels. Package: python-surfer Source: pysurfer Version: 0.3+git15-gae6cbb1-1~nd12.04+1+nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 93 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-numpy, python-scipy, python-nibabel, python-imaging, mayavi2, python-argparse, ipython Recommends: mencoder Homepage: http://pysurfer.github.com Priority: extra Section: python Filename: pool/main/p/pysurfer/python-surfer_0.3+git15-gae6cbb1-1~nd12.04+1+nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 28156 SHA256: 50ddfd6a338724eef65c70fdf5accda6cb4138a4a880812d575a3a24c82e0f4e SHA1: 3dd5e53ea0d12307cf09854ee4857f26557ed6e5 MD5sum: 5e15b6ff76d04fb48b8d45537ef67a97 Description: visualize Freesurfer's data in Python This is a Python package for visualization and interaction with cortical surface representations of neuroimaging data from Freesurfer. It extends Mayavi’s powerful visualization engine with a high-level interface for working with MRI and MEG data. . PySurfer offers both a command-line interface designed to broadly replicate Freesurfer’s Tksurfer program as well as a Python library for writing scripts to efficiently explore complex datasets. Python-Version: 2.7 Package: python3-mdp Source: mdp Version: 3.3+git6-g7bbd889-1~nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1457 Depends: neurodebian-popularity-contest, python3:any (>= 3.3.2-2~), python3-numpy Homepage: http://mdp-toolkit.sourceforge.net/ Priority: optional Section: python Filename: pool/main/m/mdp/python3-mdp_3.3+git6-g7bbd889-1~nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 472732 SHA256: 34d326fd987ac56b05616b45fdf1a1feee5c3cee4851ed34e871d9a8ef1ddf49 SHA1: 0191963e9dfae4b7b3dfe58d707a3114399d19f9 MD5sum: 2601097ca9fcd09b10342a784917d739 Description: Modular toolkit for Data Processing Python data processing framework for building complex data processing software by combining widely used machine learning algorithms into pipelines and networks. Implemented algorithms include: Principal Component Analysis (PCA), Independent Component Analysis (ICA), Slow Feature Analysis (SFA), Independent Slow Feature Analysis (ISFA), Growing Neural Gas (GNG), Factor Analysis, Fisher Discriminant Analysis (FDA), and Gaussian Classifiers. . This package contains MDP for Python 3. Package: python3-patsy Source: patsy Version: 0.2.1-2~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 535 Depends: neurodebian-popularity-contest, python3-numpy, python3:any (>= 3.3.2-2~) Recommends: python3-pandas Suggests: python-patsy-doc Homepage: http://github.com/pydata/patsy Priority: optional Section: python Filename: pool/main/p/patsy/python3-patsy_0.2.1-2~nd13.10+1_all.deb Size: 140384 SHA256: 240fefb22e743b5a444acad849e63ae4701920fb3c7fa6cba885e0f9744ec338 SHA1: b0dbd969743a2cc6d89044af4e6575fc21f0cdef MD5sum: 3350a251e0975db1c5b799599cf525c1 Description: statistical models in Python using symbolic formulas patsy is a Python library for describing statistical models (especially linear models, or models that have a linear component) and building design matrices. . This package contains the Python 3 version. Package: python3-skimage Source: skimage Version: 0.9.3-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 6161 Depends: neurodebian-popularity-contest, libfreeimage3, python3-numpy, python3-scipy (>= 0.10), python3-skimage-lib (>= 0.9.3-1~nd13.10+1), python3:any (>= 3.3.2-2~) Recommends: python3-imaging, python3-pil, python3-matplotlib (>= 1.0), python3-nose Suggests: python-skimage-doc Homepage: http://scikit-image.org Priority: optional Section: python Filename: pool/main/s/skimage/python3-skimage_0.9.3-1~nd13.10+1_all.deb Size: 4529352 SHA256: 1954d095c5dda861a9a16d40bc290dd87d9c62b5a3ebffed61bca0b3940dc3be SHA1: fec0293ba0f1d43be9dc26b2a221cc88fddb4397 MD5sum: ecd693c691939be0476ffd23dda19fa6 Description: Python 3 modules for image processing scikit-image is a collection of image processing algorithms for Python. It performs tasks such as image loading, filtering, morphology, segmentation, color conversions, and transformations. . This package provides the Python 3 module. Package: spm8-common Source: spm8 Version: 8.5236~dfsg.1-1~nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 18499 Depends: neurodebian-popularity-contest Recommends: spm8-data, spm8-doc Priority: extra Section: science Filename: pool/main/s/spm8/spm8-common_8.5236~dfsg.1-1~nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 10744052 SHA256: 05f7ef0de3af1f49c7f7dafba91b9d8f5f082bd48ad7acd365a89a105fcd6c71 SHA1: 829ef9f220b3a9595b3acdb7ada1bedcdfdbc378 MD5sum: 137a219ff42452e9439fe275cb949cc3 Description: analysis of brain imaging data sequences Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provides the platform-independent M-files. Package: spm8-data Source: spm8 Version: 8.5236~dfsg.1-1~nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 72987 Depends: neurodebian-popularity-contest Priority: extra Section: science Filename: pool/main/s/spm8/spm8-data_8.5236~dfsg.1-1~nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 52166702 SHA256: 85b2c5e9081fd7cf506defb5327413d0222f01f3b7e6fd959e5e2ccf8d83000c SHA1: 8a53b81d37062647c56fac6117a589fb776bbac5 MD5sum: 9d6cae39f3455ec2cc5a2f3ccf8b002d Description: data files for SPM8 Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provide the data files shipped with the SPM distribution, such as various stereotaxic brain space templates and EEG channel setups. Package: spm8-doc Source: spm8 Version: 8.5236~dfsg.1-1~nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 9242 Depends: neurodebian-popularity-contest Priority: extra Section: doc Filename: pool/main/s/spm8/spm8-doc_8.5236~dfsg.1-1~nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 8990912 SHA256: a35cf1eaaf17c77bc2c148da711ed2d386131f25f4ea98c326b36ee3a0867e07 SHA1: a21337c1d47d0ae2b39bcabb477ecbdf0fdff4f0 MD5sum: e7247d37c03ce8eafa3ae5e619c752a2 Description: manual for SPM8 Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provides the SPM manual in PDF format. Package: spyder Version: 2.2.5+dfsg-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 94 Depends: neurodebian-popularity-contest, python:any, python-spyderlib (= 2.2.5+dfsg-1~nd13.10+1) Homepage: http://code.google.com/p/spyderlib/ Priority: extra Section: devel Filename: pool/main/s/spyder/spyder_2.2.5+dfsg-1~nd13.10+1_all.deb Size: 36094 SHA256: 9b421cf2dd4baf6337fee59f8d4de941497d7c115ba7a078fbf22c0adda8a839 SHA1: e2fd2c04cce115e7fa8cdbb9005c75039af9f1fa MD5sum: 140f3abee79c6f9f3d6469c93b721c9a Description: python IDE for scientists Spyder (previously known as Pydee) is a free open-source Python development environment providing MATLAB-like features in a simple and light-weighted software Package: spykeviewer Version: 0.4.0-1~nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1120 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), python-guidata, python-guiqwt (>= 2.1.4), python-spyderlib, python-spykeutils (>= 0.4.0), python-neo (>= 0.2.1), python-matplotlib, python-scipy, python-nose, python-sphinx, python-tables Recommends: libjs-jquery, libjs-underscore, ipython-qtconsole (>= 0.12) Homepage: http://www.ni.tu-berlin.de/software/spykeviewer Priority: extra Section: python Filename: pool/main/s/spykeviewer/spykeviewer_0.4.0-1~nd13.04+1+nd13.10+1_all.deb Size: 575306 SHA256: 959cbfd23cf8d7761d77fac41530d08a428c4f4a773f411acb5e26ecb6e5d507 SHA1: c639d49e4fe954f60c40dbccb74e9c158da58912 MD5sum: cb9540ab965b6ba06bbab01ed8f3d8b3 Description: graphical utility for analyzing electrophysiological data Spyke Viewer is a multi-platform GUI application for navigating, analyzing and visualizing electrophysiological datasets. Based on the Neo framework, it works with a wide variety of data formats. Spyke Viewer includes an integrated Python console and a plugin system for custom analyses and plots. Package: stabilitycalc Version: 0.1-1~nd11.04+1+nd11.10+1+nd12.04+1+nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 119 Depends: neurodebian-popularity-contest, python, python-support (>= 0.90.0), python-numpy, python-matplotlib, python-scipy, python-nifti Recommends: python-dicom Homepage: https://github.com/bbfrederick/stabilitycalc Priority: extra Section: science Filename: pool/main/s/stabilitycalc/stabilitycalc_0.1-1~nd11.04+1+nd11.10+1+nd12.04+1+nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 28850 SHA256: 2885d99daf2891a6f2fe488f25d5f54002ff6d6df0252f5e946ceff1f20e452b SHA1: a9e67198cec5f15cc2bc910b9a9fdbb90f7f40ac MD5sum: 505b20b36e42d72d4d7ca1bc051d90b5 Description: evaluate fMRI scanner stability Command-line tools to calculate numerous fMRI scanner stability metrics, based on the FBIRN quality assurance test protocal. Any 4D volumetric timeseries image in NIfTI format is support input. Output is a rich HTML report. Python-Version: 2.7 Package: testkraut Version: 0.0.1-1~nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 359 Depends: neurodebian-popularity-contest, python (>= 2.6), python-support (>= 0.90.0), python-numpy, libjs-underscore, libjs-jquery, python-argparse Recommends: strace, python-scipy, python-colorama, python-apt Homepage: https://github.com/neurodebian/testkraut Priority: extra Section: python Filename: pool/main/t/testkraut/testkraut_0.0.1-1~nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 99698 SHA256: 40b0868fbb47a9758a535769ae6eaac9e3ec55f0c3b39557f43303f5fe8dd0b3 SHA1: 3ca2b3698fcbc13058665807cb8ffc9ad4fd25d9 MD5sum: a6c94efec638cee547260e58486ee71a Description: test and evaluate heterogeneous data processing pipelines This is a framework for software testing. That being said, testkraut tries to minimize the overlap with the scopes of unit testing, regression testing, and continuous integration testing. Instead, it aims to complement these kinds of testing, and is able to re-use them, or can be integrated with them. . In a nutshell testkraut helps to facilitate statistical analysis of test results. In particular, it focuses on two main scenarios: . * Comparing results of a single (test) implementation across different or changing computational environments (think: different operating systems, different hardware, or the same machine before an after a software upgrade). * Comparing results of different (test) implementations generating similar output from identical input (think: performance of various signal detection algorithms). . While such things can be done using other available tools as well, testkraut aims to provide a lightweight, yet comprehensive description of a test run. Such a description allows for decoupling test result generation and analysis – opening up the opportunity to “crowd-source” software testing efforts, and aggregate results beyond the scope of a single project, lab, company, or site. Python-Version: 2.7