Package: fsl-5.0-doc-wikiattachments Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 175304 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-5.0-doc-wikiattachments_5.0.5-1_all.deb Size: 174610500 SHA256: 86e162830c3c5f3b546223c93b9a45c6dc4856d068dda05ab65a9896a74edce2 SHA1: e91c31ef761813a8844cb1136330422f00b1fccb MD5sum: cfca132fe7a89bfa102045943ed6b2a8 Description: attachments for the FSL documentation wiki This package is part of FSL and contains the file attachments of the FSL documentation wiki. Package: fsl-atlases Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 36 Depends: fsl-harvard-oxford-atlases, fsl-juelich-histological-atlas, fsl-jhu-dti-whitematter-atlas, fsl-mni-structural-atlas, fsl-talairach-daemon-atlas, fsl-oxford-thalamic-connectivity-atlas, fsl-bangor-cerebellar-atlas, fsl-mni152-templates, fsl-oxford-striatal-atlas, fsl-subthalamic-nucleus-atlas Replaces: fsl-data Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-atlases_5.0.5-1_all.deb Size: 4558 SHA256: 5cdeb72a752cdfcb3dfd91d5d9f40a659efc3cafb57c887eb7bd68b38c72c1be SHA1: 83a3ba29896c30083446862ce9f82d1c1d71e3c2 MD5sum: a963d450911c00fa1e0a793634b6b2ab Description: FSL's MNI152 standard space stereotaxic brain atlases This meta-package installs all stereotaxic atlases that are shipped with FSL. Package: fsl-bangor-cerebellar-atlas Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1896 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-bangor-cerebellar-atlas_5.0.5-1_all.deb Size: 1327230 SHA256: fa7809ff1fbada1465767a6311c90b87f0aa29d7d9885a8bb89fd6a28a2ae921 SHA1: 793dc1f2818b2b0f568794070da0135fbf4b1d65 MD5sum: 0541cd8876a09c884d6b7ed15c15d12b Description: probabilistic atlas of the human cerebellum This is a probabilistic atlas of the cerebellar lobules in the anatomical space defined by the MNI152 template. Lobules were masked separately on T1-weighted MRI scans (1 mm isotropic resolution) of 20 healthy young participants (10 male, 10 female, average age 23.7 yrs). These cerebella were then aligned to the standard or non-linear version of the whole-brain MNI152 template using a number of commonly used normalization algorithms, or to a previously published cerebellum-only template (Diedrichsen, J., 2006. A spatially unbiased atlas template of the human cerebellum. NeuroImage 33, 127-138). . This package is part of FSL. Package: fsl-feeds Version: 5.0.4-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 280425 Depends: fsl-5.0-core | fsl-5.0 | fsl, dc, tcl8.4 | tclsh, debianutils (>= 1.7), fsl-atlases (>= 4.1) Recommends: fsl-first-data (>= 4.1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsl-feeds/fsl-feeds_5.0.4-1_all.deb Size: 283574452 SHA256: ec972111056296aaf559bf2ba480e47cad1cc8d02771c781d612dee641cb22bf SHA1: d773329c3703d1ceee8115ce70543e4a249a9fbc MD5sum: b3afe6c5cd8e9ac2ce8c3d53f2f22ce2 Description: FSL Evaluation and Example Data Suite FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the 'fsl-selftest' tool, that can be used to test whether FSL is working properly. Additionally the included example data might be useful when doing the first steps with FSL. . The datasets include both example input and example output data. Package: fsl-first-data Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1134048 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-first-data_5.0.5-1_all.deb Size: 1076156310 SHA256: 1065750d001fe6654e33ab1661f28cd0fca948fa666722a66972d5e1675a6aa1 SHA1: 57837f856016aa6501006752973ba4afacffd647 MD5sum: 924dc4dc9ce13f0d1dcbeecc85b0b052 Description: model data for FIRST subcortical brain segmentation This package is part of FSL. Package: fsl-harvard-oxford-atlases Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 21636 Recommends: fsl-harvard-oxford-cortical-lateralized-atlas Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-harvard-oxford-atlases_5.0.5-1_all.deb Size: 20752570 SHA256: 20e4b3a23a71c96092f6c7a64a7cef16d0ac37a9acc044a49bd20a39d5ff9811 SHA1: 6a13ce6fa79c42a064ef4b43a3111c31ed9c854f MD5sum: a2c89320448e5e1262869ac030f8582b Description: probabilistic atlas of human cortical brain areas (lateralized) Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis. . T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label. . This package is part of FSL. Package: fsl-harvard-oxford-cortical-lateralized-atlas Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 8244 Depends: fsl-harvard-oxford-atlases Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-harvard-oxford-cortical-lateralized-atlas_5.0.5-1_all.deb Size: 4971492 SHA256: bdb3c9e2f920c01ca23ea00aab6ce2681600ea6f93cc535ce22b47931967a753 SHA1: 6c10af7679174c76509df8223bb87d57b5ab3712 MD5sum: d2cb730811f7028a6fe92e4192de7e88 Description: probabilistic atlas of human cortical and subcortical brain areas Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis. . T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label. . This atlas is derived from the official FSL's cortical atlas where laterality probability is taken from the subcortical atlas. . This package is not a part of official FSL distribution. Package: fsl-jhu-dti-whitematter-atlas Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 13708 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-jhu-dti-whitematter-atlas_5.0.5-1_all.deb Size: 13667110 SHA256: fffb7dd2073e822518fea90f523cb67b335374bf6042859c714d7c4d0c3ed7c8 SHA1: ea32804baf8a92b1987c9bfb7199cc8b5456b56d MD5sum: 979a81f0d686456dcd1ef151d0d4a6b4 Description: human brain white-matter atlas There are two white-matter atlases, both kindly provided by Dr. Susumu Mori, Laboratory of Brain Anatomical MRI, Johns Hopkins University. . In the ICBM-DTI-81 white-matter labels atlas, 50 white matter tract labels were created by hand segmentation of a standard-space average of diffusion MRI tensor maps from 81 subjects; mean age 39 (18:59), M:42, F: 39. The diffusion data was kindly provided by the ICBM DTI workgroup. . In the JHU white-matter tractography atlas, 20 structures were identified probabilistically by averaging the results of running deterministic tractography on 28 normal subjects (mean age 29, M:17, F:11). . This package is part of FSL. Package: fsl-juelich-histological-atlas Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 4736 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-juelich-histological-atlas_5.0.5-1_all.deb Size: 3745288 SHA256: c2d2f543e3ce34eb5387c740805c910ad344d7bfa322158bc85edc3f59f9935d SHA1: 828524d57692208369d80cf163b1cb7cf57a9ee1 MD5sum: a9bc9e838afcac7c3673c4b4f4e29268 Description: brain atlas based on cyto- and myelo-architectonic segmentations A probabilistic atlas created by averaging multi-subject post-mortem cyto- and myelo-architectonic segmentations, performed by the team of Profs Zilles and Amunts at the Research Center Jülich and kindly provided by Simon Eickhoff. . The atlas contains 32 grey matter structures and 10 white matter structures. This is the same data as used in Eickhoff's Anatomy Toolbox v1.5. The atlas is based on the microscopic and quantitative histological examination of ten human post-mortem brains. The histological volumes of these brains were 3D reconstructed and spatially normalised into the space of the MNI single subject template to create a probabilistic map of each area. For the FSL version of this atlas, these probabilistic maps were then linearly transformed into MNI152 space. . This package is part of FSL. Package: fsl-mni-structural-atlas Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 2776 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni-structural-atlas_5.0.5-1_all.deb Size: 2625636 SHA256: 9da40e88a337b349549c517cc1f85844fcbfcda96db0e018822c9d178652bc5e SHA1: 3907ecd7321ba178e19764c0a19c8e1df7e9aa77 MD5sum: 35f331d7cda345eaf7e644551c8e11f4 Description: hand-segmented single-subject human brain atlas 9 anatomical structural regions, kindly provided by Jack Lancaster at the Research Imaging Center, UTHSCSA, Texas (originally from the McConnell Brain Imaging Centre, MNI). . A single subject's structural image was hand segmented, and the labels were then propagated to more than 50 subjects' structural images using nonlinear registration. Each resulting labelled brain was then transformed into MNI152 space using affine registration, before averaging segmentations across subjects to produce the final probability images. . This package is part of FSL. Package: fsl-mni152-templates Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 56788 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni152-templates_5.0.5-1_all.deb Size: 54926734 SHA256: cf2685203420c6ba094ec6ae2e720513994e07d4602feec4e21b0d34c8d1b7ad SHA1: 46d9bdcbca8172c60b88193f68c95703c0c85739 MD5sum: 3e78a4d33ab51af910d2aed4b8111ea5 Description: MNI152 stereotaxic brain templates for FSL This package is part of FSL. Package: fsl-oxford-striatal-atlas Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 988 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-striatal-atlas_5.0.5-1_all.deb Size: 310090 SHA256: ec120fb4fa6fd8c239dc0a90597f6880369be5449a910f56d3bd520f8b01c729 SHA1: 81a8a759fc391991ac4ed90eb8b6b7f10bc4f118 MD5sum: 8f493fda4e57b6e54e311f17bd2db49d Description: probabilistic atlas of the human brain's sub-striatal regions This package provide both a structural and a connectivity atlas of the human striatum. For the latter, sub-striatal regions are segmented according to their white-matter connectivity to cortical areas. This connectivity atlas reports anatomical connection from points in the striatum to each of 7 cortical zones obtained using probabilistic diffusion tractography in multiple subjects. . In the structural atlas sub-striatal regions are segmented according to the anatomical structure. Striatum is divided into caudate, putamen and ventral striatum according to the guidelines described by Tziortzi et al., NeuroImage 54: 264-77. The sub-regions were manually delineated on the non-linear MNI152 template. . This package is part of FSL. Package: fsl-oxford-thalamic-connectivity-atlas Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 372 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-thalamic-connectivity-atlas_5.0.5-1_all.deb Size: 222204 SHA256: 929836232234544637636a9507ca7803d010929f2764da8c8b1e26a428af1d60 SHA1: d8d4595a660d1ec909fd82c2c5eca315a4390c82 MD5sum: 0818a2323467bb5ba54c9050eb234091 Description: probabilistic brain atlas of thalamic white-matter connectivity A probabilistic atlas of 7 sub-thalamic regions, segmented according to their white-matter connectivity to cortical areas, kindly provided by Heidi Johansen-Berg and Timothy Behrens, FMRIB. . This connectivity atlas reports probability of anatomical connection from points in the thalamus to each of 7 cortical zones. These probabilities are calculated using probabilistic diffusion tractography in multiple subjects. . This package is part of FSL. Package: fsl-possum-data Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 41372 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-possum-data_5.0.5-1_all.deb Size: 41621682 SHA256: 13ce70b0ed0e07525dc706b3a16e10a56460f9a24cad365b5a20189c2f20289c SHA1: e302fb47d54de14c48ce9564f105bad423c563b6 MD5sum: c39f515fcbf9397733be843c3ff6dfba Description: sequence templates for the POSSUM MRI-simulator This package is part of FSL. Package: fsl-subthalamic-nucleus-atlas Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1200 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-subthalamic-nucleus-atlas_5.0.5-1_all.deb Size: 29732 SHA256: 3662d3e5f50eef4c464d41fe6a6cdae47137ccbfb660d66fee9ff5426a226855 SHA1: c8ce35a804423a26f19eb0c42b85f0925b3262b9 MD5sum: 6a73db866eb510cc7d9c142273870eda Description: probabilistic subthalamic nucleus atlas This atlas takes advantage of the ultra-high resolution possible in 7T MRI to provide unprecedented levels of detail on structures of the basal ganglia in vivo. The atlas includes (so far) probability maps of the right and left Subthalamic Nucleus (STN) using T2*-imaging. For now it has been created on 13 young healthy participants (6 female) with a mean age of 24.38 (range: 22-28, standard deviation: 2.36). More details are available in . B.U. Forstmann, Keuken, M. C., Jahfari, S., Bazin, P.-L., Neumann, J., Schaefer, A., Anwander, A., & Turner, R. (2012). Cortico-subthalamic white matter tract strength predict interindividual efficacy in stopping a motor response. NeuroImage, 60, 370-375. . This package is part of FSL. Package: fsl-talairach-daemon-atlas Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 676 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-talairach-daemon-atlas_5.0.5-1_all.deb Size: 459290 SHA256: 375f13726672e787492d75af5aead27c3f98eb156727b0573d99e226b0654d99 SHA1: c632b1f1692cb74d690f792f0c293a20cc9748d3 MD5sum: ff01bcd4a2555dccaccf9b2ccf4b058e Description: structural anatomy labels of the Talairach atlas A conversion of the original Talairach structural labellings, kindly provided by Jack Lancaster and Diana Tordesillas Gutiérrez at the Research Imaging Center, UTHSCSA, Texas. . This is a digitised version of the original (coarsely sliced) Talairach atlas (Lancaster 2000) after the application of a correcting affine transform (Lancaster 2007) to register it into MNI152 space. . This package is part of FSL.