Package: fsl Version: 5.0.6-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 7 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.6-1~nd60+1_all.deb Size: 20624 SHA256: 1abf849185b78e2e16cf9edc8e766c28e2768804270507b683a42ef230c52f9e SHA1: da439e2fe22d83bdc62f49cd582c6dc828c566f2 MD5sum: 794ab2fb143d50743ca26707997477be Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-core' package which replaces 'fsl'. It can safely be removed. Package: fsl-4.1 Source: fsl Version: 4.1.9-6~nd60+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 27732 Depends: libc6 (>= 2.7), libgcc1 (>= 1:4.1.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4), mozilla-firefox | www-browser, tcsh | c-shell, tk8.4 (>= 8.4.7), tcl8.4 (>= 8.4.7), bc, dc Recommends: fsl-doc-4.1 (= 4.1.9-6~nd60+1), fsl-atlases, fslview Suggests: fsl-feeds, octave | octave3.2 (>= 3.2.4), dicomnifti, fsl-possum-data, fsl-first-data, gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-4.1_4.1.9-6~nd60+1_amd64.deb Size: 10346594 SHA256: 76f812eeb9be58574fcd26eba6758e21f2b1494c8a9961083cb9046939e759e4 SHA1: b04bb99b43b40c07eda54a4b2058228fb2582911 MD5sum: 73ca09c7216ab02a834a6fce225c6841 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0 Source: fsl Version: 5.0.6-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 6 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.6-1~nd60+1_all.deb Size: 19150 SHA256: 4f0a9c221aaa54f9c12452cd3d62e396a441873d4e20bf18bd1fbd4c4abb3092 SHA1: b7cdc1ad278bd59d4b7fb90777772ff5cf49d7f9 MD5sum: e23074b75b842d25c95118306055b0e3 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-core' package which replaces 'fsl-5.0'. It can safely be removed. Package: fsl-5.0-core Source: fsl Version: 5.0.6-1~nd60+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 22358 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk8.4 (>= 8.4.7), tcl8.4 (>= 8.4.7), bc, dc, python, fslview, libc6 (>= 2.7), libexpat1 (>= 1.95.8), libgcc1 (>= 1:4.1.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libgomp1 (>= 4.2.1), libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4) Recommends: fsl-5.0-doc (= 5.0.6-1~nd60+1), fsl-atlases Suggests: fsl-feeds, octave | octave3.2 (>= 3.2.4), mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.6-1~nd60+1_amd64.deb Size: 14908932 SHA256: fb4a6e5d91d23ac82ab3263126e4f40a2c298267284bf49d02b5318d1430e436 SHA1: 246e5a8601b94fb09846549fb8c7d6f1296a24a3 MD5sum: 744ad579c692d2bf3b11495fd08e1cfb Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-doc Source: fsl Version: 5.0.6-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 189 Recommends: fslview-doc Suggests: fsl-5.0-doc-wikiattachments Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.6-1~nd60+1_all.deb Size: 2376746 SHA256: adbbbd3f649b9c8b51111e40809a839686bd92689bff39288bd501243d92bc72 SHA1: c1e27580edbea3195906b9eca298a58008c23608 MD5sum: b128438e479ba41f4e276157665dc68a Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-core Source: fsl Version: 5.0.6-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 9 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.6-1~nd60+1_all.deb Size: 20384 SHA256: 01c1081c03e1c9d072d052124c93366cd4237b92b79a4162daa9ebf6fc699e46 SHA1: 40f59d832211c275cc46561ff460af9ad4269a45 MD5sum: bc6e7b14cde1f36f41bcc2abebfed968 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. Package: fsl-doc Source: fsl Version: 4.1.6-1~squeeze.nd1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 18356 Depends: fslview-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-doc_4.1.6-1~squeeze.nd1_all.deb Size: 11171278 SHA256: 9b33f8e5f15c9d4dd1a4f4c991ac3342494dc889fc6b8f355ca29084e9ea2d01 SHA1: c42a214ed78ff3bd00816cdcc84688d8b754ae03 MD5sum: 9a101564891e9bda59ff6442df69a148 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various commandline tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-doc-4.1 Source: fsl Version: 4.1.9-6~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 18088 Recommends: fslview-doc Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-doc-4.1_4.1.9-6~nd60+1_all.deb Size: 11202302 SHA256: ae4d30edf665fa787ffee70fad7919517e6b8f7a87bf8c6f1bde72fc4afa4175 SHA1: a12ca1ce9985bc9f9cc238517b42733a9bf8fc52 MD5sum: ea31f0993274a0b1edf4b9362ec50bc4 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-doc-5.0 Source: fsl Version: 5.0.6-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 6 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.6-1~nd60+1_all.deb Size: 19166 SHA256: 34ba461970cb4fb2d46e8e67b41c5711ca0d619ef612a57e51913a9119cace71 SHA1: 6c60d913dc25db6857442bcbf2248b96c54a9018 MD5sum: 6181f830a4c1e7fe250ab42f19fcc691 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. It can safely be removed. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.11.20131230-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.11.20131230-1~nd+1), psychtoolbox-3-common (>= 3.0.11.20131230-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.11.20131230-1~nd+1_all.deb Size: 3796 SHA256: aa003c7942ba35c111b61f036da5000e094bb231455ce572b11db2aad1ee23a8 SHA1: d97ee6aa0e5e92a598d3c989d8489ddaa6abb264 MD5sum: 4ab7b358373cac0bbfcc4334b30694ed Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20131230-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 4201 Depends: neurodebian-popularity-contest, psychtoolbox-3-lib (>= 3.0.11.20131230-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20131230-1~nd+1.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libglew1.9, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libgstreamer-plugins-base0.10-0, libgstreamer0.10-0, libopenal1, libpciaccess0, libusb-1.0-0 (>= 2:1.0.9~), libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.11.20131230-1~nd+1_amd64.deb Size: 914514 SHA256: 79cd14172023c1e6da0c9eb8c05b47282d0ddc6950cddd64589c8923c49c8ea1 SHA1: 075ecfa0b3ce4c3b71ffd7a5392b2e23491983ce MD5sum: 2f59b5e0c7cf0a527e507f94ca20dbc5 Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: mipav Version: 5.0.0.20100907-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 116 Pre-Depends: debconf (>= 0.5) | debconf-2.0 Depends: openjdk-6-jre | java6-runtime, libjogl-java, libjava3d-java, wget Homepage: http://mipav.cit.nih.gov/ Priority: extra Section: non-free/science Filename: pool/non-free/m/mipav/mipav_5.0.0.20100907-2_all.deb Size: 15272 SHA256: e5979bf557f27455dfe58a2244dbc066f0d5c276ab85cad013fbacc5ab303d60 SHA1: 61e581b87f680c0dbcce05e45ef290c4133fac55 MD5sum: 44ab2224b485d68657f13ac87d35c605 Description: quantitative analysis and visualization of medical images The MIPAV (Medical Image Processing, Analysis, and Visualization) application enables quantitative analysis and visualization of medical images of numerous modalities such as PET, MRI, CT, or microscopy. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites can easily share research data and analyses, thereby enhancing their ability to research, diagnose, monitor, and treat medical disorders. MIPAV provides an interface for plug-ins and serves as the foundation for other projects (e.g. JIST). . This package provides downloader/installer for non-redistributable closed-source version of MIPAV and a convenience startup wrapper. You will have a choice of reviewing the license and accepting or declining it upon installation. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20131230-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 1307 Depends: neurodebian-popularity-contest, octave-psychtoolbox-3 (>= 3.0.11.20131230-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20131230-1~nd+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.11.20131230-1~nd+1_amd64.deb Size: 320184 SHA256: 13f8f3831c778258551381fe94da0960e809e0a40bce520a3811303a3b9ffa71 SHA1: c8c4ad32a11b854b99375c4fcb22e65a6387c4f7 MD5sum: d6a69eb6fbef62ed48b2d93f0466a618 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd60+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3100 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd60+1_all.deb Size: 2051874 SHA256: 533b108360fc7cf5900c9f3321d10b60bd313b8f3eb8adc0c8790516bd5dccad SHA1: d402c13347e46ffcf4665dc8f8f55a2f6fd608d3 MD5sum: 33768b34f92fa3cb19af8ba144c92adb Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.