Package: fsl Version: 5.0.6-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 53 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.6-1~nd13.10+1_all.deb Size: 20650 SHA256: c44d23c27c6771d3f1d146f09782d9790386b32f472c9e59651fbf4b36508222 SHA1: cfcbacbe844acd873d9f9528f7aeb16574ab2ee2 MD5sum: c3268821f861180a1ada23f3691f4206 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-core' package which replaces 'fsl'. It can safely be removed. Package: fsl-5.0 Source: fsl Version: 5.0.6-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 50 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.6-1~nd13.10+1_all.deb Size: 19156 SHA256: 552f1587d8a0c686980689f5463e7a420affcd6c2869fb5227df9a98fc9eb8d0 SHA1: b86e91164cfde435a10b9ca09940bd46bcf79e17 MD5sum: e1b3464586918e2d26ab36d94f48b3c8 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-core' package which replaces 'fsl-5.0'. It can safely be removed. Package: fsl-5.0-doc Source: fsl Version: 5.0.6-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 5071 Recommends: fslview-doc Suggests: fsl-5.0-doc-wikiattachments Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.6-1~nd13.10+1_all.deb Size: 2374194 SHA256: f5e93accd11a593cf7b4cbbf50b9da70f816b01405a2a974b64118b509f90ceb SHA1: 8dc2a5e81a7f9e80d3b39ebc2d3a2baad9349e95 MD5sum: 613d714de81c597f7f7e610b97bc5bd6 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-core Source: fsl Version: 5.0.6-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 68 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.6-1~nd13.10+1_all.deb Size: 20386 SHA256: bb2722f97dfa9670ae4154b134794af9e6742a77da1e2e8278a95b011e9a78b3 SHA1: 790da848986b49106c94e95b9c8d37d96bcd3feb MD5sum: e72ba19ab9dcee8593018b62e92cb36a Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. Package: fsl-doc-5.0 Source: fsl Version: 5.0.6-1~nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 50 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.6-1~nd13.10+1_all.deb Size: 19164 SHA256: 3bcb59e8f1de2b5ce2ba5782b73a7be85c11aa2a825fc2f321450577c1a3cbe8 SHA1: 1dd167d1ee34d1c45fd55afcd0606e8a4fc31b0e MD5sum: fac8bb3b8c12fdfdb61fda402b12124f Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. It can safely be removed. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.11.20131230-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.11.20131230-1~nd+1), psychtoolbox-3-common (>= 3.0.11.20131230-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.11.20131230-1~nd+1_all.deb Size: 3796 SHA256: aa003c7942ba35c111b61f036da5000e094bb231455ce572b11db2aad1ee23a8 SHA1: d97ee6aa0e5e92a598d3c989d8489ddaa6abb264 MD5sum: 4ab7b358373cac0bbfcc4334b30694ed Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3020 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 2053202 SHA256: 7b12702ada33f632b12b57a5da90204fcac521b236fd3a774438d185234e07ef SHA1: 85ee77b328f7bc2956fed87654d031d97751b333 MD5sum: 237db5e7a5c0c3b71c846a606078b129 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.