Package: fsl Version: 5.0.6-1~nd13.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 53 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.6-1~nd13.04+1_all.deb Size: 20654 SHA256: fd4c86f2729c420a4e381d81f63c7344e310691e687fdf1a17f637f303213f83 SHA1: dad8799f1583458dc701675392fc260b9970fbdd MD5sum: 7499904a5a1e02510a3e680a02c2973c Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-core' package which replaces 'fsl'. It can safely be removed. Package: fsl-5.0 Source: fsl Version: 5.0.6-1~nd13.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 50 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.6-1~nd13.04+1_all.deb Size: 19160 SHA256: dce5db7ee85380a7a553f422623dfa18c506511fe1e7da7f364a7fdcf4cd65ad SHA1: 18a68ca6dabc381863bee4111ce5fc0b54f9b78e MD5sum: b5c888353a71c3bd86ca46d025d0de63 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-core' package which replaces 'fsl-5.0'. It can safely be removed. Package: fsl-5.0-core Source: fsl Version: 5.0.6-1~nd13.04+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 37133 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk8.4 (>= 8.4.7), tcl8.4 (>= 8.4.7), bc, dc, python, fslview, libc6 (>= 2.11), libgcc1 (>= 1:4.1.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgomp1 (>= 4.2.1), libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4) Recommends: fsl-5.0-doc (= 5.0.6-1~nd13.04+1), fsl-atlases Suggests: fsl-feeds, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.6-1~nd13.04+1_i386.deb Size: 14268588 SHA256: 3b74f57ac53f06fe7322834d02ea81b565d3b2cf5aa8f0fd6b51d22ff3a3b437 SHA1: 63da7f92a833f7fc8f3184531bb0a2db5c4181ac MD5sum: 12c43b0d86fe6fda1e26383c8790b806 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-doc Source: fsl Version: 5.0.6-1~nd13.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 5071 Recommends: fslview-doc Suggests: fsl-5.0-doc-wikiattachments Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.6-1~nd13.04+1_all.deb Size: 2374196 SHA256: 7559185b1eaf72db7479c224fd29744d04aa7cbb308497fcf9b816aa08d99752 SHA1: 9b6a45b3aceedbb46344a9d8ada2c4f8906eb89c MD5sum: 4bb29258ad61c3634055b778355d3240 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-core Source: fsl Version: 5.0.6-1~nd13.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 68 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.6-1~nd13.04+1_all.deb Size: 20392 SHA256: 655b8f1ccbff7ff1ef12a057b66fb143ed1a2f597d9e7a42fe8352c58fb7ee43 SHA1: c52eb2696b7192a718c6dd3da0123730667d5e11 MD5sum: 32401985ee10696c60291f66d32424b9 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. Package: fsl-doc-5.0 Source: fsl Version: 5.0.6-1~nd13.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 50 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.6-1~nd13.04+1_all.deb Size: 19170 SHA256: 4dca9f352d0374417915e765b0b5a1a7052c2fdbb49a07666c19040dd72b0922 SHA1: d1b15e6e9c6d70ce0167e8105a161c489ea2bf28 MD5sum: bc1a3a88d8f10d0527a6f852863f0995 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. It can safely be removed. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.11.20131230-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.11.20131230-1~nd+1), psychtoolbox-3-common (>= 3.0.11.20131230-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.11.20131230-1~nd+1_all.deb Size: 3796 SHA256: aa003c7942ba35c111b61f036da5000e094bb231455ce572b11db2aad1ee23a8 SHA1: d97ee6aa0e5e92a598d3c989d8489ddaa6abb264 MD5sum: 4ab7b358373cac0bbfcc4334b30694ed Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20131230-1~nd+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 4127 Depends: neurodebian-popularity-contest, psychtoolbox-3-lib (>= 3.0.11.20131230-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20131230-1~nd+1.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libglew1.9, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libgstreamer-plugins-base0.10-0, libgstreamer0.10-0, libopenal1, libpciaccess0, libusb-1.0-0 (>= 2:1.0.9~), libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.11.20131230-1~nd+1_i386.deb Size: 915426 SHA256: 10ff1267f73b43e8d107c8554fc1423ee54f7c8237e887eb1e61197149372b5e SHA1: eada09de2ff4b8aac26c5211eae5027145e7975d MD5sum: 2c2a919346d7620b7ea3322d7b7b51d0 Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20131230-1~nd+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 1262 Depends: neurodebian-popularity-contest, octave-psychtoolbox-3 (>= 3.0.11.20131230-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20131230-1~nd+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.11.20131230-1~nd+1_i386.deb Size: 341740 SHA256: e808dbebd1f24417346205838e7d738bcbb2c6f70ce11316bbcd57344e8bc06c SHA1: 0410d0df549d99c807bdcd48db72573f90559d57 MD5sum: 759aabeaedece2ad21401ef4379e4b1e Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd12.10+1+nd13.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3019 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd12.10+1+nd13.04+1_all.deb Size: 2053162 SHA256: 4e18f1aaf55b3a4dfc18db6aa8e936457186b32d4a2c33a1b18c324c11cd52d9 SHA1: 0f8ac540a5d0e552c38cab871e4ab63ffe0d4586 MD5sum: 6a725ba5cb09c8407cf6d65016584fce Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.