Package: afni Version: 0.20130815~dfsg.1-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 36108 Depends: neurodebian-popularity-contest, afni-common (= 0.20130815~dfsg.1-1~nd11.04+1), tcsh, gifsicle, libjpeg-progs, freeglut3, libc6 (>= 2.11), libf2c2, libgiftiio0, libgl1-mesa-glx | libgl1, libglib2.0-0 (>= 2.12.0), libglu1-mesa | libglu1, libglw1-mesa | libglw1, libgomp1 (>= 4.2.1), libgsl0ldbl (>= 1.9), libgts-0.7-5 (>= 0.7.6), libice6 (>= 1:1.0.0), libjpeg62 (>= 6b1), libmotif4, libnetcdf6, libnifti2, libsm6, libvolpack1, libx11-6, libxext6, libxi6, libxmu6, libxt6, xmhtml1 Recommends: nifti-bin, bzip2, ffmpeg, netpbm, qhull-bin Suggests: r-base Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni_0.20130815~dfsg.1-1~nd11.04+1_amd64.deb Size: 14501106 SHA256: a06f4f902b547c0737877a2a44370eb978bf0e8ca5bd0d612315a0b79dc5a73b SHA1: 84a0348426ea079f0a3b3cb04147f2a76c09864a MD5sum: 3c55abdae7337aab641580d47ca54b79 Description: toolkit for analyzing and visualizing functional MRI data AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . In addition to its own format, AFNI understands the NIfTI format and is therefore integrates easily with FSL and FreeSurfer. Package: afni-common Source: afni Version: 0.20130815~dfsg.1-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 11992 Depends: neurodebian-popularity-contest, python, tcsh Recommends: python-mdp, python-nibabel Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-common_0.20130815~dfsg.1-1~nd11.04+1_all.deb Size: 6432786 SHA256: e0d6ee559edc997852f82d9b69f5734f4d478b0034e841887eed54b9001e5f5c SHA1: 08080781aeceef85771f804bf421acef0d83c305 MD5sum: 561ab4e5d0c72262760f47bd11d18748 Description: miscellaneous scripts and data files for AFNI AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides the required architecture independent parts of AFNI. Package: afni-dbg Source: afni Version: 0.20130815~dfsg.1-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 69348 Depends: neurodebian-popularity-contest Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-dbg_0.20130815~dfsg.1-1~nd11.04+1_amd64.deb Size: 23024698 SHA256: a7a042616bd826301ba6f5883795e81d46c783890a852d8b4f21b375d9fab820 SHA1: 5b041682e8fcf726fc5df42d35fb8276af9eea1e MD5sum: cd965bd97b6acf268d2c97e6822fb9e9 Description: debug symbols for AFNI AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides debug symbols which could be useful to troubleshoot and report problems with AFNI. Package: afni-dev Source: afni Version: 0.20130815~dfsg.1-1~nd11.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 23084 Depends: neurodebian-popularity-contest Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-dev_0.20130815~dfsg.1-1~nd11.04+1_amd64.deb Size: 4600940 SHA256: b1b4e081bbb7dbd8082808bd9cfbf893bce700a6cecfa0f7af3735196717f46e SHA1: a719787e1949a6081e9347038121001419aed261 MD5sum: b6fb177ddaf60b646dcba3b47e4f10c9 Description: header and static libraries for AFNI plugin development AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides the necessary libraries and header files for AFNI plugin development. Package: fsl-5.0-complete Source: fslmeta Version: 5.0.2-4~nd11.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 32 Depends: neurodebian-popularity-contest, fsl-5.0 (>= 5.0.2-4~), fsl-doc-5.0 (>= 5.0.2-4~), fsl-atlases (>= 5.0~), fslview, fsl-possum-data (>= 5.0~), fsl-first-data (>= 5.0~) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: contrib/science Filename: pool/contrib/f/fslmeta/fsl-5.0-complete_5.0.2-4~nd11.04+1_all.deb Size: 2460 SHA256: 0cfeb5c171742b95207ca08e42c3ab5cba53171e2bb33f698bcd8ebb6a7c50e5 SHA1: 57811ddd199098e13a1ca4d94d35dd10aa57c4e9 MD5sum: 17a118a6f3b14a5c05e2a0eb6a3f2992 Description: metapackage for the entire FSL suite (tools and data) FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Installing this meta package yields a complete FSL 5.0 installation, including all tools and data packages. Package: fsl-complete Source: fslmeta Version: 5.0.2-4~nd11.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 32 Depends: neurodebian-popularity-contest, fsl-5.0-complete Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: contrib/science Filename: pool/contrib/f/fslmeta/fsl-complete_5.0.2-4~nd11.04+1_all.deb Size: 2424 SHA256: ebec14a6ee8fb990e1e9f48b02ea923e8c89793c7c9afb0b2cabdd773278aa72 SHA1: a0a5879db71404da9e2dbb183a36f0c0b5b336fe MD5sum: 6f46e6493092441c0d447758944f879c Description: metapackage for the entire FSL suite (tools and data) FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Installing this meta package yields a complete installation of the latest FSL version, including all tools and data packages. Package: jist Version: 2.0.20100907.dfsg1-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 40092 Depends: mipav, openjdk-6-jre | java6-runtime, libcommons-cli-java (>= 1.2), libdrmaa-java, libjgraph-java (>= 5.10.1.2), libxom-java (>= 1.2.1), libxpp3-java (>= 1.1.4c), libxstream-java (>= 1.3.1) Homepage: http://www.nitrc.org/projects/jist/ Priority: extra Section: contrib/science Filename: pool/contrib/j/jist/jist_2.0.20100907.dfsg1-1_all.deb Size: 9020652 SHA256: b4059b70c695e9caba46e8ea1cca6482819c740b2d91b56a569a11f6c7fc60ba SHA1: 1f898a03ea355a710e23cc79ff3b5d4c63295852 MD5sum: 800acee273ebe4a3bd78c49d32188556 Description: Java Image Science Toolkit Java Image Science Toolkit (JIST) provides a native Java-based imaging processing environment similar to the ITK/VTK paradigm. Initially developed as an extension to MIPAV (CIT, NIH, Bethesda, MD), the JIST processing infrastructure provides automated GUI generation for application plug-ins, graphical layout tools, and command line interfaces. Package: matlab-eeglab11 Source: eeglab11 Version: 11.0.0.0~b~dfsg.1-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 42416 Depends: neurodebian-popularity-contest, matlab-support Recommends: eeglab11-sampledata Priority: extra Section: contrib/science Filename: pool/contrib/e/eeglab11/matlab-eeglab11_11.0.0.0~b~dfsg.1-1~nd11.04+1_all.deb Size: 14149346 SHA256: 691f5c71a42680424be24adcbdbe4b0d9d3ee824f805e0ecee93819f9d003663 SHA1: d1fc9c80ab1bab6c969f559a5fbc9384a58e3798 MD5sum: e54f412a6efdc38c50cce22f4abc9b1a Description: electrophysiological data analysis This is sofwware for processing continuous or event-related EEG or other physiological data. It is designed for use by both novice and expert users. In normal use, the EEGLAB graphic interface calls graphic functions via pop-up function windows. The EEGLAB history mechanism can save the resulting calls to disk for later incorporation into scripts. . This package provides EEGLAB to be used with Matlab. Note that this package depends on Matlab -- a commercial software that needs to be obtained and installed separately. Package: matlab-gdf Source: libgdf Version: 0.1.2-2~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 160 Depends: neurodebian-popularity-contest, libgdf-dev (>= 0.1.2-2~nd11.04+1), matlab-support Homepage: http://sourceforge.net/projects/libgdf Priority: extra Section: contrib/science Filename: pool/contrib/libg/libgdf/matlab-gdf_0.1.2-2~nd11.04+1_all.deb Size: 23576 SHA256: 47e4dced735c3109506e5c39eb5f56226f6f81bab94d72fbabaaf4eb21f88ae4 SHA1: 267f3f11216cae3590033e90ae6cf001a93c410e MD5sum: 684749856b0945a6b7729e0d826a299b Description: IO library for the GDF -- Matlab interface GDF (General Dataformat for Biosignals) is intended to provide a generic storage for biosignals, such as EEG, ECG, MEG etc. . This package builds Matlab bindings for GDF at installation time. Note that this package depends on Matlab -- a commercial software that needs to be obtain and installed separately. Package: matlab-spm8 Source: spm8 Version: 8.5236~dfsg.1-1~nd11.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1464 Depends: neurodebian-popularity-contest, matlab-support, spm8-common (= 8.5236~dfsg.1-1~nd11.04+1), make Provides: spm, spm8 Priority: extra Section: contrib/science Filename: pool/contrib/s/spm8/matlab-spm8_8.5236~dfsg.1-1~nd11.04+1_all.deb Size: 234514 SHA256: 319ac1b9cfc8140cc638ea2f22594ce265998f339b1161a48ff5972bd40678e1 SHA1: 2d794eb442103bae752d2c9cadb7a4331806e5ac MD5sum: 368b56531046c58161f1b021f0f0f770 Description: analysis of brain imaging data sequences for Matlab Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provides SPM to be used with Matlab. Note that this package depends on Matlab -- a commercial software that needs to be obtained and installed separately. Package: matlab-support Version: 0.0.19~nd11.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 96 Depends: neurodebian-popularity-contest, debconf (>= 1.3.22) | cdebconf (>= 0.43), debconf (>= 0.5) | debconf-2.0, libxp6, sudo Recommends: libstdc++6-4.4-dev | libstdc++-dev Conflicts: matlab (<= 0.0.14~) Replaces: matlab (<= 0.0.14~) Priority: optional Section: contrib/devel Filename: pool/contrib/m/matlab-support/matlab-support_0.0.19~nd11.04+1_all.deb Size: 31816 SHA256: 34d3f49035e3ea16124764e970e427af706ede8efedadac8f26e2ffbae698890 SHA1: 7a9acfaffa7a815d593128d3835f59916e8a7885 MD5sum: 174f750ddeb3ba5d2140523cff74682e Description: distro integration for local MATLAB installations This package does not provide MATLAB. Instead, it configures an existing MATLAB installation to integrate more comfortably in a Debian installation. . Currently it provides /usr/bin/matlab through the alternatives system, offers to work around incompatibilities between the libraries bundled with MATLAB and system libraries, and provides a helper utility meant to be used by other packages to compile MEX extensions. . Install this if you would like your MATLAB installation to behave more like an ordinary Debian package. Other packages may depend on this one if they install MATLAB code, for example in order to compile MEX extensions.