Package: fsl Version: 5.0.6-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 53 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.6-1~nd70+1_all.deb Size: 20584 SHA256: 2a0dc73a9fdb6b0d27648f1e342fe2bcfd29e50b765cffea723cdbcc95213675 SHA1: b3b06a6e67f26bf124b7be93ab6a65bb36114387 MD5sum: 8f072933af4754e5403c920b6088e2ee Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-core' package which replaces 'fsl'. It can safely be removed. Package: fsl-5.0 Source: fsl Version: 5.0.6-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 50 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.6-1~nd70+1_all.deb Size: 19132 SHA256: 3b8c205ee50dceee3ef4a2f62c868bdc848c7a2b017591cbacc5ca5b68ec73cc SHA1: dc334711b6862f4221318b8e6d8cd2e688d43c62 MD5sum: dd687915a00f6ccdc14e45166c2a2511 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-core' package which replaces 'fsl-5.0'. It can safely be removed. Package: fsl-5.0-core Source: fsl Version: 5.0.6-1~nd70+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 37512 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk8.4 (>= 8.4.7), tcl8.4 (>= 8.4.7), bc, dc, python, fslview, libc6 (>= 2.11), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.1.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libgomp1 (>= 4.2.1), libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4) Recommends: fsl-5.0-doc (= 5.0.6-1~nd70+1), fsl-5.0-gpu (= 5.0.6-1~nd70+1), fsl-atlases Suggests: fsl-feeds, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.6-1~nd70+1_amd64.deb Size: 14324912 SHA256: e1f03f59583e7b166f6c34e472e386efd22244557bf76c001863c721bc0c7737 SHA1: 280d4fd5b3d3b3baf74e770dbf985311ebdd995a MD5sum: ae159f1144ed3d348e487272cd49d11e Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-doc Source: fsl Version: 5.0.6-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 5071 Recommends: fslview-doc Suggests: fsl-5.0-doc-wikiattachments Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.6-1~nd70+1_all.deb Size: 2374546 SHA256: 88354e95db62b5e14b210c3f3f1fe380eca8f3f3f1af7e32f86d15bdd01e6f65 SHA1: c8ac3bef9bdc6abbcd136c7187b58c05caaa8aa2 MD5sum: f01cbb7b355b6a22800cb88e733036a3 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-5.0-gpu Source: fsl Version: 5.0.6-1~nd70+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 4394 Depends: fsl-5.0-core (= 5.0.6-1~nd70+1), libc6 (>= 2.4), libcuda1 (>= 260), libcudart4 (>= 4.0), libcurand4 (>= 3.2), libgcc1 (>= 1:4.1.1), libnewmat10ldbl, libnifti2, libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-gpu_5.0.6-1~nd70+1_amd64.deb Size: 1019334 SHA256: 0e4ce7a105b08c11cc50cde856bd1c4a8b2f337c1b0b8a76311c48aff2c6cb52 SHA1: 7d6976eb916194206d568934cdc9117b0c3e768e MD5sum: a2426e5bd0303217c67cb70b30203579 Description: GPU-accelerated tools for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . This package provides accelerated versions of some FSL commands to utilize NVIDIA's CUDA toolkit. Package: fsl-core Source: fsl Version: 5.0.6-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 68 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.6-1~nd70+1_all.deb Size: 20366 SHA256: e2badcccfdf5c7155d620f975f672712002200807af34649665e69a0b9be59bf SHA1: b14af2122fb2af480d02f3e04b45cb696054e320 MD5sum: 7a1644b80a133c16c22cb70c6221933a Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. Package: fsl-doc-5.0 Source: fsl Version: 5.0.6-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 50 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.6-1~nd70+1_all.deb Size: 19136 SHA256: 41176547ca24ab44f4d8a472f052874177f2162cbfe77f1e443a9178384f140d SHA1: 9fd50bf632cab6063fe8180f26eccf684d12d00a MD5sum: 55d1b962c2dfcaa119d6253529b493d3 Description: transitional dummy package This is a transitional dummy package. Its only purpose is to install the 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. It can safely be removed. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.11.20131230-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.11.20131230-1~nd+1), psychtoolbox-3-common (>= 3.0.11.20131230-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.11.20131230-1~nd+1_all.deb Size: 3796 SHA256: aa003c7942ba35c111b61f036da5000e094bb231455ce572b11db2aad1ee23a8 SHA1: d97ee6aa0e5e92a598d3c989d8489ddaa6abb264 MD5sum: 4ab7b358373cac0bbfcc4334b30694ed Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20131230-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 4201 Depends: neurodebian-popularity-contest, psychtoolbox-3-lib (>= 3.0.11.20131230-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20131230-1~nd+1.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libglew1.9, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libgstreamer-plugins-base0.10-0, libgstreamer0.10-0, libopenal1, libpciaccess0, libusb-1.0-0 (>= 2:1.0.9~), libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.11.20131230-1~nd+1_amd64.deb Size: 914514 SHA256: 79cd14172023c1e6da0c9eb8c05b47282d0ddc6950cddd64589c8923c49c8ea1 SHA1: 075ecfa0b3ce4c3b71ffd7a5392b2e23491983ce MD5sum: 2f59b5e0c7cf0a527e507f94ca20dbc5 Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20131230-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 1307 Depends: neurodebian-popularity-contest, octave-psychtoolbox-3 (>= 3.0.11.20131230-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20131230-1~nd+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.11.20131230-1~nd+1_amd64.deb Size: 320184 SHA256: 13f8f3831c778258551381fe94da0960e809e0a40bce520a3811303a3b9ffa71 SHA1: c8c4ad32a11b854b99375c4fcb22e65a6387c4f7 MD5sum: d6a69eb6fbef62ed48b2d93f0466a618 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3063 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd70+1_all.deb Size: 2051872 SHA256: c9772d066da29f69860ae42cbca9805917dbeb520fb1f7614c49531e47dc66d0 SHA1: 3533625c940936aec15a317cdaaa12adb9e00082 MD5sum: 9ffed1c52f0c7bba4c04bdb549847ed1 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.