Package: fsl Version: 5.0.6-2~nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 54 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.6-2~nd13.10+1_all.deb Size: 21086 SHA256: 42c8e02acf3268af382cb5a07551bafb506dedf70d9c9872fc01b0f23480107c SHA1: d677a0ad81da393505cb63d0642bbfc23db25e9c MD5sum: 313c08b37040e7e3720067df7f699555 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.6-2~nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 51 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.6-2~nd13.10+1_all.deb Size: 19552 SHA256: df25d1452e02a87485c1c843797df5a609c56acc6a0d122ebb733fbf20876a78 SHA1: c73c5486d7a708a36cc16d42c6951f150d847535 MD5sum: ad4e4dcb92b26e97b6920f31149f9fe8 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-doc Source: fsl Version: 5.0.6-2~nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 5072 Recommends: fslview-doc Suggests: fsl-5.0-doc-wikiattachments Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.6-2~nd13.10+1_all.deb Size: 2376402 SHA256: 2d62dec6af650f654062a79bec72740bbd5defab5db10f43acb042baa1f0fe2d SHA1: 3d459cd100b23d39d286e699ea2b0db3846c7860 MD5sum: c85fa5228121d4cea29e62164aaad3dd Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-core Source: fsl Version: 5.0.6-2~nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 69 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.6-2~nd13.10+1_all.deb Size: 20752 SHA256: 207086af461b1c654cfe99529973ac43fecd68e0443ea25b4e1c5827d0516182 SHA1: 341ecf28487d73d8a3c477cff89829c7b0e9f1dc MD5sum: bd496e7eb3822215b28254bd74d1828e Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-doc-5.0 Source: fsl Version: 5.0.6-2~nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 51 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.6-2~nd13.10+1_all.deb Size: 19558 SHA256: 9e8a4e7da80e26aada1fc17e8835014c41f362e10016df2e7e09f4b22f82445a SHA1: e50f0abfb2a404d9b02d3ba154c493d9d38aa48b MD5sum: 0b3524909dda6ebddf7f6f5be7b33459 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.11.20140516-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.11.20140516-1~nd+1), psychtoolbox-3-common (>= 3.0.11.20140516-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.11.20140516-1~nd+1_all.deb Size: 3912 SHA256: fb7cb0faaac9de7103e859d7e21dadf54250fe7b332ad1a039781c886d19244f SHA1: 5b8871a87563d9d6a1d639786b5a4c6a5ac4bb06 MD5sum: d772f920ab4adac0236d4938a70b2d46 Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd12.10+1+nd13.04+1+nd13.10+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3020 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd12.10+1+nd13.04+1+nd13.10+1_all.deb Size: 2053202 SHA256: 7b12702ada33f632b12b57a5da90204fcac521b236fd3a774438d185234e07ef SHA1: 85ee77b328f7bc2956fed87654d031d97751b333 MD5sum: 237db5e7a5c0c3b71c846a606078b129 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.