Package: fsl Version: 5.0.7-2~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 54 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.7-2~nd12.04+1_all.deb Size: 21378 SHA256: 191432b8197b1e1c370762d51ae069e9bd086510eee1412eaf87d5573e1212ff SHA1: 9bf22684ada4fbbf438e0e441f0dd3e0d4a6a6d4 MD5sum: 93f9f70833640a2089eb5fe2bb0e67d3 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.7-2~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 51 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.7-2~nd12.04+1_all.deb Size: 19986 SHA256: a720a348c05a7f814a47204a93da69f730c598d1666aca133543235adc34d721 SHA1: e2cd78b0d602ecfcc9dd84a6c62d20ee6934a39e MD5sum: abf374df6cf309566aaaa6aa5d63de64 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-doc Source: fsl Version: 5.0.6-2~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 5072 Recommends: fslview-doc Suggests: fsl-5.0-doc-wikiattachments Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.6-2~nd12.04+1_all.deb Size: 2376402 SHA256: 66c06840b9a01843123ee0af884947cd654d7618a8804ec73242a3f28867975f SHA1: 3c4369f69669fe3d1a88bd5dcca8f056893f125d MD5sum: 41d07214f7bbf2284d37f0ca00b9b57a Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-core Source: fsl Version: 5.0.7-2~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 69 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.7-2~nd12.04+1_all.deb Size: 21180 SHA256: d079b70a9f56469fae30f4de8498664a956008b9749d19b494ba408291b97d75 SHA1: 849387d5170b00e0429bf79b29c6ea88da785148 MD5sum: dca9df15be0faba474b6904f9c0b09d0 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-doc-4.1 Source: fsl Version: 4.1.9-6~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 17495 Recommends: fslview-doc Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-doc-4.1_4.1.9-6~nd12.04+1_all.deb Size: 11202278 SHA256: e6c1b8831beabc35ace88708b3ce183f6170f49c2488f5a4811630d732eb3a22 SHA1: aba43e80be1c70c679effa0fda5b7e6d0ee13be0 MD5sum: e7d508aa59beaa3f40c384c64483c662 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-doc-5.0 Source: fsl Version: 5.0.6-2~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 51 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.6-2~nd12.04+1_all.deb Size: 19560 SHA256: f9d60e5c5668f81fc22e817e42cfb5c83d15b651c2d3d787e27f791f2d62eec9 SHA1: dbb84ee7176966ef85aff7052b2fadb54bb8bcb9 MD5sum: 7f9aa6670d19eef0b2c1dc63745b49e7 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.11.20140705-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.11.20140705-1~nd+1), psychtoolbox-3-common (>= 3.0.11.20140705-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.11.20140705-1~nd+1_all.deb Size: 3940 SHA256: a7b5d456b00d013d5e206da647b010be0910ef1a48a1b2089474aeee9eb3e215 SHA1: f1d09429032ae30833bc003924ab872608a523b4 MD5sum: 36d668e7e167ec5a1f2d60f17f980c60 Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd12.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3063 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd12.04+1_all.deb Size: 2051876 SHA256: c6ddd49fdaa533afcb03f492ce010cc8e37273a791beed44ff4db4e7953d0ce3 SHA1: dcd7ee76a6604d8997b2cbc066997d15dca17d31 MD5sum: 31eda233bb479d3d21349372e66807b7 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.