Package: afni Version: 0.20141118~dfsg.1-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 37388 Depends: neurodebian-popularity-contest, afni-common (= 0.20141118~dfsg.1-1~nd+1), tcsh, gifsicle, libjpeg-progs, freeglut3, libc6 (>= 2.14), libf2c2, libgiftiio0, libgl1-mesa-glx | libgl1, libglib2.0-0 (>= 2.12.0), libglu1-mesa | libglu1, libglw1-mesa | libglw1, libgomp1 (>= 4.9), libgsl0ldbl (>= 1.9), libgts-0.7-5 (>= 0.7.6), libice6 (>= 1:1.0.0), libnetcdfc7, libnifti2, libsm6, libvolpack1 (>= 1.0b3), libx11-6, libxext6, libxm4 (>= 2.3.4), libxmhtml1.1 (>= 1.1.9), libxmu6, libxt6, zlib1g (>= 1:1.1.4) Recommends: nifti-bin, bzip2, ffmpeg, netpbm, qhull-bin Suggests: r-base Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni_0.20141118~dfsg.1-1~nd+1_amd64.deb Size: 10372712 SHA256: 66119b6bd402e07caf0f36fb7d4395621fd232b4a78ccc630340b9b19efff044 SHA1: 107f92778e7b6220ae32f212b56f25ec136fa3d6 MD5sum: a10c59c26093596268cb0f5e390745ed Description: toolkit for analyzing and visualizing functional MRI data AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . In addition to its own format, AFNI understands the NIfTI format and is therefore integrates easily with FSL and FreeSurfer. Package: afni-common Source: afni Version: 0.20141118~dfsg.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 12885 Depends: neurodebian-popularity-contest, python, tcsh Recommends: python-mdp, python-nibabel, afni-atlases Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-common_0.20141118~dfsg.1-1~nd+1_all.deb Size: 8285590 SHA256: 7d465d6d9f338ed95b305600ab9a136148ee8599d3edf4c142d9f8b14eb7cc55 SHA1: 87437bf19467de9320be0ffc57a1e114820a4e83 MD5sum: 350c550a129ac73c25ceefd0d4989c80 Description: miscellaneous scripts and data files for AFNI AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides the required architecture independent parts of AFNI. Package: afni-dbg Source: afni Version: 0.20141118~dfsg.1-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 63729 Depends: neurodebian-popularity-contest Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-dbg_0.20141118~dfsg.1-1~nd+1_amd64.deb Size: 12446358 SHA256: d464668bef1b92e07a2104ac6ac6bedc965162adf21394ff2af44286ea2eb2df SHA1: dcf0585fbd2620059784e1afcf3fefcb7eb40a7b MD5sum: 8689cea014cff57a574d4ae33a1a581c Description: debug symbols for AFNI AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides debug symbols which could be useful to troubleshoot and report problems with AFNI. Package: afni-dev Source: afni Version: 0.20141118~dfsg.1-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 18884 Depends: neurodebian-popularity-contest Homepage: http://afni.nimh.nih.gov Priority: extra Section: contrib/science Filename: pool/contrib/a/afni/afni-dev_0.20141118~dfsg.1-1~nd+1_amd64.deb Size: 3572998 SHA256: 7a8873960eb4310d734baad58b899a715de932de7240c6069f9efc35a621588a SHA1: 1d5aa98af8296a16a8939a5e3fd9fcd5ca01feb6 MD5sum: cac984aaa71d6ff06516cbac2fe63f35 Description: header and static libraries for AFNI plugin development AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including 3D cortical surface models, and mapping of volumetric data (SUMA). . This package provides the necessary libraries and header files for AFNI plugin development. Package: fsl-5.0-complete Source: fslmeta Version: 5.0.7-1~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 29 Depends: fsl-5.0-core (>= 5.0.7-1~nd+1~), fsl-atlases (>= 5.0~), fslview, fsl-possum-data (>= 5.0~), fsl-first-data (>= 5.0~) Recommends: fsl-5.0-wiki (>= 5.0.7-1~nd+1~), fsl-5.0-gpu (>= 5.0.7-1~nd+1~) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: contrib/science Filename: pool/contrib/f/fslmeta/fsl-5.0-complete_5.0.7-1~nd+1_all.deb Size: 4010 SHA256: 93605b3367cc40a49c84809034de7069f18c4217f97032d6f737e4f42d6cc636 SHA1: 152680b0768df44c3b73d5a1389d7a1d9c03e536 MD5sum: d6c7fa1b09816fbcc2505ba21dc4d30a Description: metapackage for the entire FSL suite (tools and data) FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Installing this meta package yields a complete FSL 5.0 installation, including all tools and data packages. Package: fsl-complete Source: fslmeta Version: 5.0.7-1~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 29 Depends: fsl-5.0-complete, fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: contrib/science Filename: pool/contrib/f/fslmeta/fsl-complete_5.0.7-1~nd+1_all.deb Size: 3956 SHA256: a9f6e0e0a687b02d92f0d50cec2fce28cb894db5cd93d84c8da22a5934574678 SHA1: 1160123d29da9f16d0172c8b06e2fbc9616c9c50 MD5sum: aaec989abf3ca55be4fcb31b92077b4d Description: metapackage for the entire FSL suite (tools and data) FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Installing this meta package yields a complete installation of the latest FSL version, including all tools and data packages. Package: jist Version: 2.0.20100907.dfsg1-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 40092 Depends: mipav, openjdk-6-jre | java6-runtime, libcommons-cli-java (>= 1.2), libdrmaa-java, libjgraph-java (>= 5.10.1.2), libxom-java (>= 1.2.1), libxpp3-java (>= 1.1.4c), libxstream-java (>= 1.3.1) Homepage: http://www.nitrc.org/projects/jist/ Priority: extra Section: contrib/science Filename: pool/contrib/j/jist/jist_2.0.20100907.dfsg1-1_all.deb Size: 9020652 SHA256: b4059b70c695e9caba46e8ea1cca6482819c740b2d91b56a569a11f6c7fc60ba SHA1: 1f898a03ea355a710e23cc79ff3b5d4c63295852 MD5sum: 800acee273ebe4a3bd78c49d32188556 Description: Java Image Science Toolkit Java Image Science Toolkit (JIST) provides a native Java-based imaging processing environment similar to the ITK/VTK paradigm. Initially developed as an extension to MIPAV (CIT, NIH, Bethesda, MD), the JIST processing infrastructure provides automated GUI generation for application plug-ins, graphical layout tools, and command line interfaces. Package: matlab-eeglab11 Source: eeglab11 Version: 11.0.0.0~b~dfsg.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 40738 Depends: neurodebian-popularity-contest, matlab-support Recommends: eeglab11-sampledata Priority: extra Section: contrib/science Filename: pool/contrib/e/eeglab11/matlab-eeglab11_11.0.0.0~b~dfsg.1-1~nd+1_all.deb Size: 14149348 SHA256: 455350d6a826a5abb2170ea489a354f94b384bb75512369be6c57b1329b35aea SHA1: 32131ade56b38f857b2dfa85860c626897ffc5b6 MD5sum: 2e9241791578ded3f4f447121c871aff Description: electrophysiological data analysis This is sofwware for processing continuous or event-related EEG or other physiological data. It is designed for use by both novice and expert users. In normal use, the EEGLAB graphic interface calls graphic functions via pop-up function windows. The EEGLAB history mechanism can save the resulting calls to disk for later incorporation into scripts. . This package provides EEGLAB to be used with Matlab. Note that this package depends on Matlab -- a commercial software that needs to be obtained and installed separately. Package: matlab-gdf Source: libgdf Version: 0.1.2-2~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 125 Depends: neurodebian-popularity-contest, libgdf-dev (>= 0.1.2-2~nd+1), matlab-support Homepage: http://sourceforge.net/projects/libgdf Priority: extra Section: contrib/science Filename: pool/contrib/libg/libgdf/matlab-gdf_0.1.2-2~nd+1_all.deb Size: 23790 SHA256: b34bc091b8f8bb24e8d81caf6a5b8aa81b21fc8e8ea5434581f16be1e855e957 SHA1: b994179e49c38f083c4146abed2a5db0da4149e7 MD5sum: f6ae0e84c4ed3a30669f78c256a3ba6b Description: IO library for the GDF -- Matlab interface GDF (General Dataformat for Biosignals) is intended to provide a generic storage for biosignals, such as EEG, ECG, MEG etc. . This package builds Matlab bindings for GDF at installation time. Note that this package depends on Matlab -- a commercial software that needs to be obtain and installed separately. Package: matlab-spm8 Source: spm8 Version: 8.5236~dfsg.1-1~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1251 Depends: neurodebian-popularity-contest, matlab-support, spm8-common (= 8.5236~dfsg.1-1~nd+1), make Provides: spm, spm8 Priority: extra Section: contrib/science Filename: pool/contrib/s/spm8/matlab-spm8_8.5236~dfsg.1-1~nd+1_all.deb Size: 237186 SHA256: f7dcd17bab4fc1885928bb0a40fbc09290e735b16d62f16b8ac78d01fce46d33 SHA1: f3d36f6ff78470980f15c566b180deb1e2b5ae9b MD5sum: 257e7ac8aa00035425ea9ea8bd3fc06a Description: analysis of brain imaging data sequences for Matlab Statistical Parametric Mapping (SPM) refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional brain imaging data. These ideas have been instantiated in software that is called SPM. It is designed for the analysis of fMRI, PET, SPECT, EEG and MEG data. . This package provides SPM to be used with Matlab. Note that this package depends on Matlab -- a commercial software that needs to be obtained and installed separately. Package: matlab-support Version: 0.0.19~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 60 Depends: neurodebian-popularity-contest, debconf (>= 1.3.22) | cdebconf (>= 0.43), debconf (>= 0.5) | debconf-2.0, libxp6, sudo Recommends: libstdc++6-4.4-dev | libstdc++-dev Conflicts: matlab (<= 0.0.14~) Replaces: matlab (<= 0.0.14~) Priority: optional Section: contrib/devel Filename: pool/contrib/m/matlab-support/matlab-support_0.0.19~nd+1_all.deb Size: 31806 SHA256: a0e29939f4799c0913ade2b77fd14a29b608d764f7067462f1ed3014275c8dff SHA1: efe8fd3e5a45c06c346a88c75c403c466b782603 MD5sum: 8a7d3fc078bf2eb65d21c0588393a0bd Description: distro integration for local MATLAB installations This package does not provide MATLAB. Instead, it configures an existing MATLAB installation to integrate more comfortably in a Debian installation. . Currently it provides /usr/bin/matlab through the alternatives system, offers to work around incompatibilities between the libraries bundled with MATLAB and system libraries, and provides a helper utility meant to be used by other packages to compile MEX extensions. . Install this if you would like your MATLAB installation to behave more like an ordinary Debian package. Other packages may depend on this one if they install MATLAB code, for example in order to compile MEX extensions.