Package: fsl Version: 5.0.8-1~nd80+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 54 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.8-1~nd80+1_all.deb Size: 20654 SHA256: 5018ecc89b715b497774fbed8ba358328e4e2743ddbcf3e695f089072527f95d SHA1: e37a6047ca6bd9fbce61b668c542211777a18e9e MD5sum: 98954cd606aa4014d2764aca69742039 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.8-1~nd80+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 51 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.8-1~nd80+1_all.deb Size: 19300 SHA256: 17bac6d67c305453e8c6b724d556416963d2d666f8d13907d2287998e6b5eb83 SHA1: aceadd29ee7d2a857299936a7eb31bbdd3419124 MD5sum: 3507ca64d11da112e8c9ed4448435153 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-doc Source: fsl Version: 5.0.6-2~nd80+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 5072 Recommends: fslview-doc Suggests: fsl-5.0-doc-wikiattachments Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.6-2~nd80+1_all.deb Size: 2082926 SHA256: f2a9dde983212a4d8e2a8d8c4c200c789fbfae56802fddaafb57418e40d1086b SHA1: 1f49989c1a36c19d60d6abfdc9ac65ec140f78c7 MD5sum: a1c6ec22ae7d1e4ddfa58d2b833cbac1 Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-core Source: fsl Version: 5.0.8-1~nd80+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 69 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.8-1~nd80+1_all.deb Size: 20558 SHA256: 3dc5c4c6f83129fff52358dc1fc243b372b162ec34de54a10982f3b7935dde07 SHA1: 3cface5555fd5ff0c95b46df8fdf03b9e1442e49 MD5sum: 8bd8e8ce9070d12ef8df933223e0f598 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-doc-5.0 Source: fsl Version: 5.0.6-2~nd80+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 51 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.6-2~nd80+1_all.deb Size: 18382 SHA256: 6b04248b2ff073562fa48c5ec78db0e7559f4a4403ebdcf40b750410aa287a88 SHA1: 34fa9db051acd361284d84dbd656a579c985b6ac MD5sum: 8f6e50ef882f14a3f36e33ba93f196e9 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.11.20140816-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.11.20140816-1~nd+1), psychtoolbox-3-common (>= 3.0.11.20140816-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.11.20140816-1~nd+1_all.deb Size: 3968 SHA256: ef438d9c3f2969aac7abb75ff181a2ddb8195a4d8f6890f2d0166d0ac2c9b8c9 SHA1: 1da9edf5eef6102c3ec21ea156f9b8bce808654f MD5sum: bd31111c87f63ecfcca67d269ed173a1 Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3063 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd70+1_all.deb Size: 2051872 SHA256: c9772d066da29f69860ae42cbca9805917dbeb520fb1f7614c49531e47dc66d0 SHA1: 3533625c940936aec15a317cdaaa12adb9e00082 MD5sum: 9ffed1c52f0c7bba4c04bdb549847ed1 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.