Package: fsl Version: 5.0.8-2~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 55 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.8-2~nd+1_all.deb Size: 20676 SHA256: e67ac787768fa7c860da4af89ba02071b5701727d1bc4329c84be37808e3a404 SHA1: a572d0e0eed6317f645c16fe02ad4cda25b1c114 MD5sum: e3eb3b8e717737831931b8c600637153 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.8-2~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 51 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.8-2~nd+1_all.deb Size: 19320 SHA256: e9142bef58aa285dbd255d1275865ba1a010fde8a80e316abfd8ee9985476571 SHA1: 14ec0fb450c6d63e5e1f2cd95bae68bbc2d5da05 MD5sum: f093b0c5bceb2390256fa70a066016ec Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-core Source: fsl Version: 5.0.8-2~nd+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 42552 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk (>= 8.4.7), tcl (>= 8.4.7), bc, dc, python, fslview, libc6 (>= 2.14), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.1.1), libgd3 (>= 2.1.0~alpha~), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libgomp1 (>= 4.9), libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.9), zlib1g (>= 1:1.1.4) Recommends: fsl-atlases Suggests: fsl-feeds, fsl-5.0-gpu, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.8-2~nd+1_amd64.deb Size: 8362430 SHA256: 36cba5220e35db350178b7fb93f4d407a73f165c5417750da504e0f673566373 SHA1: a96c83153b31008fb804116bc3db1010af7188c9 MD5sum: a43812fcc98150e071eaac05dc5f7223 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-doc Source: fsl Version: 5.0.6-2~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 5072 Recommends: fslview-doc Suggests: fsl-5.0-doc-wikiattachments Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.6-2~nd+1_all.deb Size: 2082902 SHA256: 9c2cb061fa45b87db0d8e8176151ae8eac93d96e3c18982dac996410cd0811d5 SHA1: 473b11d507c01d14afee61b2946db77cf53e9c0f MD5sum: 72013763629cbb27179c34cc2a0d244a Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-5.0-gpu Source: fsl Version: 5.0.6-2~nd+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 1787 Depends: fsl-5.0-core (= 5.0.6-2~nd+1), libc6 (>= 2.14), libcuda1 (>= 260), libcudart5.5 (>= 4.0), libcurand5.5 (>= 3.2), libgcc1 (>= 1:4.1.1), libnewmat10ldbl, libnifti2, libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-gpu_5.0.6-2~nd+1_amd64.deb Size: 858400 SHA256: 79261daf58c5567640142beaa78902ef3c9b3082fbecb87e09656a730b0cbc40 SHA1: c5607cdb07f1240cb17a16000d844983340f58c2 MD5sum: 6eab9f0f016950092bc87116110c7c51 Description: GPU-accelerated tools for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . This package provides accelerated versions of some FSL commands to utilize NVIDIA's CUDA toolkit. Package: fsl-core Source: fsl Version: 5.0.8-2~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 69 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.8-2~nd+1_all.deb Size: 20584 SHA256: 55f3a2589ec4df73ea0dd0cdb5ecdfc826b5c7ae4c5f9f6bf4354f36dd0fa926 SHA1: fb8a2955616845e3574ddb896a29673a9016ca13 MD5sum: 0aadff34c6711b3fc6a4bcd1e5a9825b Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-doc-5.0 Source: fsl Version: 5.0.6-2~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 51 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.6-2~nd+1_all.deb Size: 18360 SHA256: 3b1ed8d6b0b34f441c59b43527df165bbdb506f2f562076766feca30200c385c SHA1: 955ec6c97ac1085834e744ba54092f455b65fea8 MD5sum: 0ae2a3eda3e937b47333e3d8d34779bd Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.12.20141228-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.12.20141228-1~nd+1), psychtoolbox-3-common (>= 3.0.12.20141228-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.12.20141228-1~nd+1_all.deb Size: 4020 SHA256: 83f760f689ff60454a81003986d2856446f619892adcefb0770c30f1b2ceb9e5 SHA1: 2eebe49c66b88b1897c44b142e325db10269c8e0 MD5sum: a1b492e6e909e9ad312f8773489274e6 Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.12.20141228-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 4668 Depends: neurodebian-popularity-contest, psychtoolbox-3-lib (>= 3.0.12.20141228-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.12.20141228-1~nd+1.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libglew1.9, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libgstreamer-plugins-base0.10-0, libgstreamer0.10-0, libopenal1, libpciaccess0, libusb-1.0-0 (>= 2:1.0.9~), libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.12.20141228-1~nd+1_amd64.deb Size: 1002568 SHA256: 863bfe3d1e3ddaddbcf55eee62743ab6300c4d1d3af04048c06873557c65c71b SHA1: 3106360a37cf9998243df918d6d3c48bae6625dd MD5sum: 0451cca53ff0cc720263c9c36f46d7ce Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: mipav Version: 5.0.0.20100907-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 116 Pre-Depends: debconf (>= 0.5) | debconf-2.0 Depends: openjdk-6-jre | java6-runtime, libjogl-java, libjava3d-java, wget Homepage: http://mipav.cit.nih.gov/ Priority: extra Section: non-free/science Filename: pool/non-free/m/mipav/mipav_5.0.0.20100907-2_all.deb Size: 15272 SHA256: e5979bf557f27455dfe58a2244dbc066f0d5c276ab85cad013fbacc5ab303d60 SHA1: 61e581b87f680c0dbcce05e45ef290c4133fac55 MD5sum: 44ab2224b485d68657f13ac87d35c605 Description: quantitative analysis and visualization of medical images The MIPAV (Medical Image Processing, Analysis, and Visualization) application enables quantitative analysis and visualization of medical images of numerous modalities such as PET, MRI, CT, or microscopy. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites can easily share research data and analyses, thereby enhancing their ability to research, diagnose, monitor, and treat medical disorders. MIPAV provides an interface for plug-ins and serves as the foundation for other projects (e.g. JIST). . This package provides downloader/installer for non-redistributable closed-source version of MIPAV and a convenience startup wrapper. You will have a choice of reviewing the license and accepting or declining it upon installation. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.12.20141228-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 1762 Depends: neurodebian-popularity-contest, octave-psychtoolbox-3 (>= 3.0.12.20141228-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.12.20141228-1~nd+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.12.20141228-1~nd+1_amd64.deb Size: 407114 SHA256: 193af5545cc0180e7625b8dcb734e374d5f792a4684effbe8cc25b54ae361d86 SHA1: 1cd767839bf713cf979b49b18eafad4b2fdf0fbb MD5sum: 01d85292766bb40f4920bf4c2c6c1bc1 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3063 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd+1_all.deb Size: 2051858 SHA256: 0443217eab5c6bbbeabbdfa7636abcc0664a5930257c2c08c5307b0939b37a2b SHA1: 7f381aa56aa2560d6d89d40dd831b619e9c9165b MD5sum: 2d1600df56649fe3954e4afe16442100 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.