Package: fsl Version: 5.0.8-3~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 31 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.8-3~nd+1_all.deb Size: 20718 SHA256: 75838eedb4b7b975fe0cf940f4f22e316555fd7ccd97a5d9c01a49ef1729d07d SHA1: 56a023d7885178d354f2ebe157067684c1a64854 MD5sum: dd957ae8be1109dd0835ffa79470f45c Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.8-3~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 28 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.8-3~nd+1_all.deb Size: 19444 SHA256: dcbd654c912ca86615defef8cc0e0f185d4afb74cf2ff98f3f01bdf7aae5bc24 SHA1: 1e25dcb42ffe0734519d8039acde404e4115fe5b MD5sum: c05f26084842b7d86b4c6a5f40afbedb Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-core Source: fsl Version: 5.0.8-3~nd+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 40045 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk (>= 8.4.7), tcl (>= 8.4.7), bc, dc, python, fslview, libc6 (>= 2.11), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.1.1), libgd3 (>= 2.1.0~alpha~), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libgomp1 (>= 4.9), libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.9), zlib1g (>= 1:1.1.4) Recommends: fsl-atlases Suggests: fsl-feeds, fsl-5.0-gpu, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.8-3~nd+1_i386.deb Size: 8333590 SHA256: 280440439810e02bbff08de7bc8d6435b8c2b26f284f26f1132229887bd5c9b9 SHA1: 1b9d43143bd295094272f7a49b8d90a4a63be885 MD5sum: c1188b3a712df0c83fe5cefcbb96dd62 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-doc Source: fsl Version: 5.0.6-2~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 5072 Recommends: fslview-doc Suggests: fsl-5.0-doc-wikiattachments Breaks: fsl-doc-5.0 (<< 5.0.3) Replaces: fsl-doc-5.0 (<< 5.0.3) Provides: fsl-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/doc Filename: pool/non-free/f/fsl/fsl-5.0-doc_5.0.6-2~nd+1_all.deb Size: 2082902 SHA256: 9c2cb061fa45b87db0d8e8176151ae8eac93d96e3c18982dac996410cd0811d5 SHA1: 473b11d507c01d14afee61b2946db77cf53e9c0f MD5sum: 72013763629cbb27179c34cc2a0d244a Description: documentation for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the FSL documentation in HTML format. Package: fsl-5.0-gpu Source: fsl Version: 5.0.6-2~nd+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 1740 Depends: fsl-5.0-core (= 5.0.6-2~nd+1), libc6 (>= 2.4), libcuda1 (>= 260), libcudart5.5 (>= 4.0), libcurand5.5 (>= 3.2), libgcc1 (>= 1:4.1.1), libnewmat10ldbl, libnifti2, libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-gpu_5.0.6-2~nd+1_i386.deb Size: 843084 SHA256: 662ae46947aa923df102c19bb052b375a2feefb600814e6ed39f13e3d20cc926 SHA1: b7f8fe9716db2a1426c5fad6936d5b2749b6f3d3 MD5sum: 9be0b32868ec0199537c3f01287fb6bc Description: GPU-accelerated tools for FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . This package provides accelerated versions of some FSL commands to utilize NVIDIA's CUDA toolkit. Package: fsl-core Source: fsl Version: 5.0.8-3~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 30 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.8-3~nd+1_all.deb Size: 20730 SHA256: d0fe39a01e5db1ceba780db840f30421a3fc55ff74799410a1cb3909eca84204 SHA1: c08c50fb5c6b4308b2cbce63d9ccaaeae8454f69 MD5sum: 7cf2df84db18c5bdc807820454789a59 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-doc-5.0 Source: fsl Version: 5.0.6-2~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 51 Depends: fsl-5.0-doc Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-doc-5.0_5.0.6-2~nd+1_all.deb Size: 18360 SHA256: 3b1ed8d6b0b34f441c59b43527df165bbdb506f2f562076766feca30200c385c SHA1: 955ec6c97ac1085834e744ba54092f455b65fea8 MD5sum: 0ae2a3eda3e937b47333e3d8d34779bd Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-doc' package which replaces 'fsl-doc-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.12.20141228-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.12.20141228-1~nd+1), psychtoolbox-3-common (>= 3.0.12.20141228-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.12.20141228-1~nd+1_all.deb Size: 4020 SHA256: 83f760f689ff60454a81003986d2856446f619892adcefb0770c30f1b2ceb9e5 SHA1: 2eebe49c66b88b1897c44b142e325db10269c8e0 MD5sum: a1b492e6e909e9ad312f8773489274e6 Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20140816-1~nd+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 4153 Depends: neurodebian-popularity-contest, psychtoolbox-3-lib (>= 3.0.11.20140816-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20140816-1~nd+1.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libglew1.9, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libgstreamer-plugins-base0.10-0, libgstreamer0.10-0, libopenal1, libpciaccess0, libusb-1.0-0 (>= 2:1.0.9~), libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.11.20140816-1~nd+1_i386.deb Size: 921102 SHA256: d699f0b39adcd1ef59e2b8595f1223acc2617dc393b3143ede0fee3f170f5a64 SHA1: 9d8b3c9fdade3c2bdb00fffdb3f5aecfc0dab568 MD5sum: 600581dc1e3bae7077161ae6a3e4eeab Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: mipav Version: 5.0.0.20100907-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 116 Pre-Depends: debconf (>= 0.5) | debconf-2.0 Depends: openjdk-6-jre | java6-runtime, libjogl-java, libjava3d-java, wget Homepage: http://mipav.cit.nih.gov/ Priority: extra Section: non-free/science Filename: pool/non-free/m/mipav/mipav_5.0.0.20100907-2_all.deb Size: 15272 SHA256: e5979bf557f27455dfe58a2244dbc066f0d5c276ab85cad013fbacc5ab303d60 SHA1: 61e581b87f680c0dbcce05e45ef290c4133fac55 MD5sum: 44ab2224b485d68657f13ac87d35c605 Description: quantitative analysis and visualization of medical images The MIPAV (Medical Image Processing, Analysis, and Visualization) application enables quantitative analysis and visualization of medical images of numerous modalities such as PET, MRI, CT, or microscopy. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites can easily share research data and analyses, thereby enhancing their ability to research, diagnose, monitor, and treat medical disorders. MIPAV provides an interface for plug-ins and serves as the foundation for other projects (e.g. JIST). . This package provides downloader/installer for non-redistributable closed-source version of MIPAV and a convenience startup wrapper. You will have a choice of reviewing the license and accepting or declining it upon installation. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.12.20141228-1~nd+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 1528 Depends: neurodebian-popularity-contest, octave-psychtoolbox-3 (>= 3.0.12.20141228-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.12.20141228-1~nd+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.12.20141228-1~nd+1_i386.deb Size: 394092 SHA256: 0c75c4c23c36304a56ad74d07ffe04ab0fbd9cd768709e43c66e55d87b0ff64a SHA1: 38d74eccd8bfe517ca7c0864a15ecf3433d4bc29 MD5sum: 2faff4b81cbd39044c00f93d575fd812 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3063 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd+1_all.deb Size: 2051858 SHA256: 0443217eab5c6bbbeabbdfa7636abcc0664a5930257c2c08c5307b0939b37a2b SHA1: 7f381aa56aa2560d6d89d40dd831b619e9c9165b MD5sum: 2d1600df56649fe3954e4afe16442100 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.