Package: fsl Version: 5.0.8-3~nd80+1+nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 38 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.8-3~nd80+1+nd90+1_all.deb Size: 20690 SHA256: 8b00ff3b063d47deb6e5ee317ce424870be678a6af4a19dbb52e7c222deedc7d SHA1: d3b9d7593b1bfc4ff99ed3b5af9d2c6b83792f1e MD5sum: 2828bf50d4571592b7b916997623375a Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.8-3~nd80+1+nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 34 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.8-3~nd80+1+nd90+1_all.deb Size: 19412 SHA256: 140a25470193e477b3994df788bdd8cc22637d3c646f5b32db90da6e6a347227 SHA1: 6951175eca8e99333702534302f40cccae3bf3d5 MD5sum: 54dfc72b324a63065c2503d338024cc3 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-core Source: fsl Version: 5.0.8-3~nd80+1+nd90+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 41278 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk (>= 8.4.7), tcl (>= 8.4.7), bc, dc, python, fslview, libc6 (>= 2.14), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.1.1), libgd3 (>= 2.1.0~alpha~), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libgomp1 (>= 4.9), libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.9), zlib1g (>= 1:1.1.4) Recommends: fsl-atlases Suggests: fsl-feeds, fsl-5.0-gpu, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.8-3~nd80+1+nd90+1_amd64.deb Size: 8453518 SHA256: e247a024eb099b3a1ada4b4602f723d96a9d995ba0c3e4d18df33ea7cc66d0d1 SHA1: 81e88bfb0414c3e0b8f1a7267c98f6bc03dddf6f MD5sum: ac6d94f603f35b4ef30051e61ebe1bd0 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-core Source: fsl Version: 5.0.8-3~nd80+1+nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 42 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.8-3~nd80+1+nd90+1_all.deb Size: 20610 SHA256: 647febb7b86ffd8dcef0d06faaf4054dcf0bbe046435ef0b6269ec1ccc12b938 SHA1: 346eac7d1519bd51b287771ca0615642ebc2cd94 MD5sum: 0528a9063a0896a32c0bad3aba849850 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.12.20150419-1~nd+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 19 Depends: neurodebian-popularity-contest, matlab-psychtoolbox-3-nonfree (= 3.0.12.20150419-1~nd+1), psychtoolbox-3-common (>= 3.0.12.20150419-1~nd+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.12.20150419-1~nd+1_all.deb Size: 4056 SHA256: 518009f27c0de8417771ac30790c4dd34d1c63d723b125ee82980b4e8e84365f SHA1: 65860b7fb89e4cc08be7fda24281a15a7261b6f6 MD5sum: e3320c30bb0807c71fcd2ffab1b73dde Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.12.20150419-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 4711 Depends: neurodebian-popularity-contest, psychtoolbox-3-lib (>= 3.0.12.20150419-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.12.20150419-1~nd+1.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libglew1.9, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libgstreamer-plugins-base0.10-0, libgstreamer0.10-0, libopenal1, libpciaccess0, libusb-1.0-0 (>= 2:1.0.9~), libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.12.20150419-1~nd+1_amd64.deb Size: 1003882 SHA256: 20bee18e4d9ef8ba7186941bd5cf7cac923b79b57f3934f0d178eeb08ce637ba SHA1: 207ecef4b5e24fb6c024c400a8d1f92c1c73f832 MD5sum: 4de01643c5666ec93e84eb7d31038a37 Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.12.20150419-1~nd+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 1782 Depends: neurodebian-popularity-contest, octave-psychtoolbox-3 (>= 3.0.12.20150419-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.12.20150419-1~nd+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.12.20150419-1~nd+1_amd64.deb Size: 408148 SHA256: d7ef1292674399881ca1b6094ce4b72da82b71ad3d623819b0fc9c6f7172ea99 SHA1: 381d6b00e5f653e7bfc80b18329dc28da88ec1e6 MD5sum: df953ab0e862f2ed108f525244f40e59 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd70+1+nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3036 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd70+1+nd90+1_all.deb Size: 1771694 SHA256: 651f753605211b134717b49f292f96ad99739203a00bd496d8fb57b0641d3c08 SHA1: a803a50e31872d88aa7b592b8b3ac74073c5cd39 MD5sum: 801ba2e094ef196dc82cad2d02a214eb Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.