Package: fsl Version: 5.0.8-3~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 31 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.8-3~nd+1_all.deb Size: 20718 SHA256: 75838eedb4b7b975fe0cf940f4f22e316555fd7ccd97a5d9c01a49ef1729d07d SHA1: 56a023d7885178d354f2ebe157067684c1a64854 MD5sum: dd957ae8be1109dd0835ffa79470f45c Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.8-3~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 28 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.8-3~nd+1_all.deb Size: 19444 SHA256: dcbd654c912ca86615defef8cc0e0f185d4afb74cf2ff98f3f01bdf7aae5bc24 SHA1: 1e25dcb42ffe0734519d8039acde404e4115fe5b MD5sum: c05f26084842b7d86b4c6a5f40afbedb Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-core Source: fsl Version: 5.0.8-3~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 30 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.8-3~nd+1_all.deb Size: 20730 SHA256: d0fe39a01e5db1ceba780db840f30421a3fc55ff74799410a1cb3909eca84204 SHA1: c08c50fb5c6b4308b2cbce63d9ccaaeae8454f69 MD5sum: 7cf2df84db18c5bdc807820454789a59 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.12.20150725-1~ndall Architecture: all Maintainer: NeuroDebian Team Installed-Size: 4 Depends: matlab-psychtoolbox-3-nonfree (= 3.0.12.20150725-1~ndall), psychtoolbox-3-common (>= 3.0.12.20150725-1~ndall.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.12.20150725-1~ndall_all.deb Size: 3924 SHA256: e022a574748dd4d677eacc26fbec3215706f7054536b1e0b9f31237a9da5ab62 SHA1: c5421bdb80172a5adff0eacb4a28916f02021f6b MD5sum: 39214d4585cc7a6c8c9d3709dd78e6ad Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3063 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd+1_all.deb Size: 2051858 SHA256: 0443217eab5c6bbbeabbdfa7636abcc0664a5930257c2c08c5307b0939b37a2b SHA1: 7f381aa56aa2560d6d89d40dd831b619e9c9165b MD5sum: 2d1600df56649fe3954e4afe16442100 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.