Package: fsl Version: 5.0.9-1~nd15.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 55 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.9-1~nd15.04+1_all.deb Size: 21382 SHA256: 7f242ef653774e009a7ef99a5f550cc0139405de3d5bcbb7d16f95011ecd7481 SHA1: 5a36e1b972516019d6ec3072928f9fbec522f15d MD5sum: 4f5e622e93b6b3e9e4c899da86230c88 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.9-1~nd15.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 52 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.9-1~nd15.04+1_all.deb Size: 20106 SHA256: 0ef06c01a24d143de1928ca5be7c8c7ff171817159e1f9f19bbffe7c47c87b83 SHA1: 13ea98ac7574145151cafa19aa00a9ec66650e44 MD5sum: 1f47afecf0650c3160a875f656856111 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-core Source: fsl Version: 5.0.9-1~nd15.04+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 39646 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk, tcl, bc, dc, python, fslview, libjs-excanvas, libc6 (>= 2.11), libgcc1 (>= 1:4.1.1), libgd3 (>= 2.1.0~alpha~), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.9), zlib1g (>= 1:1.1.4) Recommends: fsl-atlases, fsl-5.0-eddy-nonfree Suggests: fsl-feeds, fsl-5.0-gpu, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.9-1~nd15.04+1_i386.deb Size: 8359118 SHA256: a0fc539cc4eb9dad1c56424c95c847ba8d7c3a1a841e7b8598897252d9e963f5 SHA1: d395f0d6ad1a86609adb30d23c451e913110fd1f MD5sum: 7176e98b01ff9e84ec9abd1127f31926 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-eddy-nonfree Source: fsl-eddy-nonfree Version: 5.0.9-1~nd15.04+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 845 Depends: neurodebian-popularity-contest, fsl-5.0-core (>= 5.0.9-1~), libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libnewmat10ldbl, libstdc++6 (>= 4.9) Conflicts: fsl-5.0-core (<< 5.0.9) Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl-eddy-nonfree/fsl-5.0-eddy-nonfree_5.0.9-1~nd15.04+1_i386.deb Size: 283728 SHA256: 6c26cbd41dc4728d0ba02bf5288a9a6c53ee9241f0bd7311a847193b3d671a76 SHA1: 2f51826836987d9ab4624e80ec0b384bdf03ec30 MD5sum: 8d4b6f5e2ed615e0b6ff79bde8f046b1 Description: correcting eddy currents and movements in diffusion data This package provide the 'eddy' component of the FSL MRI data analysis suite. Since FSL 5.0.9 eddy is no longer included in the main fsl package, because its sources are no longer publicly available. Package: fsl-core Source: fsl Version: 5.0.9-1~nd15.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 70 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.9-1~nd15.04+1_all.deb Size: 21368 SHA256: 887a7ecd57a1b8346eb12cf8f2ed776d83e552d9b52b99adddf19e4eee07ddb9 SHA1: 8c8b2c29a7fb4eb857ff5ccaf77841a15b7398e7 MD5sum: 1c169d7898e2f3e98c594d1d35c04ae5 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.12.20150725-1~ndall Architecture: all Maintainer: NeuroDebian Team Installed-Size: 4 Depends: matlab-psychtoolbox-3-nonfree (= 3.0.12.20150725-1~ndall), psychtoolbox-3-common (>= 3.0.12.20150725-1~ndall.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.12.20150725-1~ndall_all.deb Size: 3924 SHA256: e022a574748dd4d677eacc26fbec3215706f7054536b1e0b9f31237a9da5ab62 SHA1: c5421bdb80172a5adff0eacb4a28916f02021f6b MD5sum: 39214d4585cc7a6c8c9d3709dd78e6ad Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.12.20150725-1~ndall Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 1528 Depends: octave-psychtoolbox-3 (>= 3.0.12.20150725-1~ndall.dfsg), psychtoolbox-3-common (>= 3.0.12.20150725-1~ndall.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.12.20150725-1~ndall_i386.deb Size: 394486 SHA256: b126341d41c6c961fceebf565aed7d9dc91c9c27a0adc95eabf0c6781feb0dd7 SHA1: 4270c29c5f01a0043b8c04983cdc358cbf1922bf MD5sum: bc16e1db6de164c65df715db57be6218 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd12.10+1+nd13.04+1+nd13.10+1+nd14.04+1+nd14.10+1+nd15.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3020 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd12.10+1+nd13.04+1+nd13.10+1+nd14.04+1+nd14.10+1+nd15.04+1_all.deb Size: 1771872 SHA256: 25ef8a271e4d26a7fc980188a7c563eb8f5d337e9fc6953eb5c767d1f6c5a735 SHA1: 7bb157995f81edb056fe5ede7e25f482bb056782 MD5sum: d14dbdfe0568f1e6b637bfb8609405a9 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.