User Guide

Release:0.11.0 Date:September 18, 2015, 23:54 PDT

• Download and install
  • Download
  • Install
  • Testing the install
  • Dependencies
• Running Nipype in a VM
• Tutorial : Interfaces
  • Specifying options
  • Getting Help
  • FSL interface example
  • SPM interface example
• Interface caching
  • Interface caching: why and how
  • A big picture view: using the Memory object
  • Usage patterns: working efficiently with caching
  • API reference

• Tutorial : Workflows
• Using Nipype Plugins
• Configuration File
• Debugging Nipype Workflows

• DataGrabber and DataSink explained
• The SelectFiles Interfaces
• The Function Interface
• MapNode, iterfield, and iterables explained
• JoinNode, synchronize and itersource
• Model Specification for First Level fMRI Analysis
• Saving Workflows and Nodes to a file (experimental)
• Using SPM with MATLAB Common Runtime
• Using MIPAV, JIST, and CBS Tools
• Running Nipype Interfaces from the command line (nipype_cmd)