Package: fsl Version: 5.0.9-3~nd80+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 55 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.9-3~nd80+1_all.deb Size: 21600 SHA256: 4dd0f6a51fd8bf6963d3fb1bf7e4f598bcd026351bdbc460f158eaac44b46cf5 SHA1: 4e9c04d60d5276a81b983f074ba6b87aedb6911e MD5sum: ef8d802c2d80938f5edac7371252b4e6 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.9-3~nd80+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 52 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.9-3~nd80+1_all.deb Size: 20252 SHA256: f8c008b210052ea7a4fb48efca38d5faabf7a74aab2bf5f5e8a209b15e6f078a SHA1: 21a63b12859d4c2dc71c25c12733ae9c7e647f61 MD5sum: 69439bf6ce6a168b3c7766f126d5b0f2 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-core Source: fsl Version: 5.0.9-3~nd80+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 39667 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk, tcl, bc, dc, python, libjs-excanvas, libc6 (>= 2.11), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.1.1), libgd3 (>= 2.1.0~alpha~), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.9), zlib1g (>= 1:1.1.4) Recommends: fsl-atlases, fsl-5.0-eddy-nonfree, fslview Suggests: fsl-feeds, fsl-5.0-gpu, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.9-3~nd80+1_i386.deb Size: 8366950 SHA256: f11e9356335a63dbd93239088b3d17eeee96e82ad267531f8b6a523550f38804 SHA1: 8d6f21ca6a5ac16b585790e1ed708b862188fa4e MD5sum: bd8a245642ad8196b7cf3f01e189ff14 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-eddy-nonfree Source: fsl-eddy-nonfree Version: 5.0.9-1~nd80+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 841 Depends: neurodebian-popularity-contest, fsl-5.0-core (>= 5.0.9-1~), libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libnewmat10ldbl, libstdc++6 (>= 4.9) Conflicts: fsl-5.0-core (<< 5.0.9) Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl-eddy-nonfree/fsl-5.0-eddy-nonfree_5.0.9-1~nd80+1_i386.deb Size: 282682 SHA256: c0b0083ef40eac4f012edfeab0cfa65d7b0c5c6ad8184c922d3901de1bba55bb SHA1: e226ebf3b17a9fc9a3f26ace3bf69ac6088836ed MD5sum: 7012d18054de7937a567299f6b352fca Description: correcting eddy currents and movements in diffusion data This package provide the 'eddy' component of the FSL MRI data analysis suite. Since FSL 5.0.9 eddy is no longer included in the main fsl package, because its sources are no longer publicly available. Package: fsl-core Source: fsl Version: 5.0.9-3~nd80+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 70 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.9-3~nd80+1_all.deb Size: 21538 SHA256: efe6918236ff441b27c16f5652d123ed24c4ffbdebfc1f2dd22011ba6a644f3e SHA1: 3f9ac8b62877daeac20f3bbcb71b6eff87cfb008 MD5sum: 5bd3e7324731684e832960e5f1a52324 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.12.20160514-1~ndall Architecture: all Maintainer: NeuroDebian Team Installed-Size: 19 Depends: matlab-psychtoolbox-3-nonfree (= 3.0.12.20160514-1~ndall), psychtoolbox-3-common (>= 3.0.12.20160514-1~ndall.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.12.20160514-1~ndall_all.deb Size: 4096 SHA256: 8ac12c0b55df1a708df6469be7c0ea5931ee47cc35a0cce91f47faa928ae1427 SHA1: b4e7af4090587ab97656898474c0dec1a5c36e70 MD5sum: 833fe0815607ad13ef7cfa8a38eddcc7 Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.11.20140816-1~nd+1 Architecture: i386 Maintainer: NeuroDebian Maintainers Installed-Size: 4153 Depends: neurodebian-popularity-contest, psychtoolbox-3-lib (>= 3.0.11.20140816-1~nd+1.dfsg), psychtoolbox-3-common (>= 3.0.11.20140816-1~nd+1.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libglew1.9, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libgstreamer-plugins-base0.10-0, libgstreamer0.10-0, libopenal1, libpciaccess0, libusb-1.0-0 (>= 2:1.0.9~), libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.11.20140816-1~nd+1_i386.deb Size: 921102 SHA256: d699f0b39adcd1ef59e2b8595f1223acc2617dc393b3143ede0fee3f170f5a64 SHA1: 9d8b3c9fdade3c2bdb00fffdb3f5aecfc0dab568 MD5sum: 600581dc1e3bae7077161ae6a3e4eeab Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.12.20160514-1~ndall Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 1548 Depends: octave-psychtoolbox-3 (>= 3.0.12.20160514-1~ndall.dfsg), psychtoolbox-3-common (>= 3.0.12.20160514-1~ndall.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.12.20160514-1~ndall_i386.deb Size: 395308 SHA256: 13acf0db743154b8fc65f547e2192fbf14e3aa346fc4eaf727dcdcfca744b504 SHA1: 49782287a520eb8def909073aa03e78affaa5a32 MD5sum: ed739c7c1c07358853e8d9e533ad27e7 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3063 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd70+1_all.deb Size: 2051872 SHA256: c9772d066da29f69860ae42cbca9805917dbeb520fb1f7614c49531e47dc66d0 SHA1: 3533625c940936aec15a317cdaaa12adb9e00082 MD5sum: 9ffed1c52f0c7bba4c04bdb549847ed1 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.