Package: fsl Version: 5.0.9-1~nd+1+nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 39 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.9-1~nd+1+nd16.04+1_all.deb Size: 21456 SHA256: e9dd05908fd344cf8595f6de1785f1d14189be8bddecb03a41e8b1a809b244b7 SHA1: d02c19cc1955dac1a44f8146cbc51f775b936484 MD5sum: 2d6779b4569da0d7b248f57c8c7fb4a3 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.9-1~nd+1+nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 35 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.9-1~nd+1+nd16.04+1_all.deb Size: 20118 SHA256: 1f46c9d3f7f66ca4e9a32cb95adaa48244e16e8836b57267b112d88a45ab8978 SHA1: 39d59d55a020b04de8a3305ca930cccfad2d44ea MD5sum: 28799fa6a67349837fb35b8460fc3ecf Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-core Source: fsl Version: 5.0.9-1~nd+1+nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 43 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.9-1~nd+1+nd16.04+1_all.deb Size: 21310 SHA256: cf5175cd8793e2cb5c0e14aa94d773d2df88009006b275e51c291b0ca957856f SHA1: e59016ce68b1cf9b31019fa91954bab86fba64b7 MD5sum: 4af4f2443b16b70a49e59739a299d3e9 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.12.20160514-1~ndall Architecture: all Maintainer: NeuroDebian Team Installed-Size: 19 Depends: matlab-psychtoolbox-3-nonfree (= 3.0.12.20160514-1~ndall), psychtoolbox-3-common (>= 3.0.12.20160514-1~ndall.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.12.20160514-1~ndall_all.deb Size: 4096 SHA256: 8ac12c0b55df1a708df6469be7c0ea5931ee47cc35a0cce91f47faa928ae1427 SHA1: b4e7af4090587ab97656898474c0dec1a5c36e70 MD5sum: 833fe0815607ad13ef7cfa8a38eddcc7 Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd+1+nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3036 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd+1+nd16.04+1_all.deb Size: 1771398 SHA256: 42ce1ae866a5e9b4d0564629b0c07cfe4ab85ecd7dbde7dd2e4d6779383d1541 SHA1: 2966fb73e4b00f10da6e23e344c5eadc3bd875d6 MD5sum: 93f47649bd0924f87b17227a8f8edf60 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.