Package: fsl Version: 5.0.9-1~nd+1+nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 39 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.9-1~nd+1+nd16.04+1_all.deb Size: 21456 SHA256: e9dd05908fd344cf8595f6de1785f1d14189be8bddecb03a41e8b1a809b244b7 SHA1: d02c19cc1955dac1a44f8146cbc51f775b936484 MD5sum: 2d6779b4569da0d7b248f57c8c7fb4a3 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.9-1~nd+1+nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 35 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.9-1~nd+1+nd16.04+1_all.deb Size: 20118 SHA256: 1f46c9d3f7f66ca4e9a32cb95adaa48244e16e8836b57267b112d88a45ab8978 SHA1: 39d59d55a020b04de8a3305ca930cccfad2d44ea MD5sum: 28799fa6a67349837fb35b8460fc3ecf Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-core Source: fsl Version: 5.0.9-1~nd+1+nd16.04+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 38938 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk, tcl, bc, dc, python, fslview, libjs-excanvas, libc6 (>= 2.11), libgcc1 (>= 1:4.2), libgd3 (>= 2.1.0~alpha~), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Recommends: fsl-atlases, fsl-5.0-eddy-nonfree Suggests: fsl-feeds, fsl-5.0-gpu, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.9-1~nd+1+nd16.04+1_i386.deb Size: 7777950 SHA256: acf278f0e6e0378a7eefb651ddaeabb94dc10e4717e74a844f7c67e5d94b67d4 SHA1: e774e048a6777eae54dc624c79245413ec7bbf90 MD5sum: 30a0d55b55131fdf04cc486a694837c1 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-eddy-nonfree Source: fsl-eddy-nonfree Version: 5.0.9-1~nd16.04+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 803 Depends: neurodebian-popularity-contest, fsl-5.0-core (>= 5.0.9-1~), libc6 (>= 2.4), libgcc1 (>= 1:3.0), libnewmat10ldbl, libstdc++6 (>= 5.2) Conflicts: fsl-5.0-core (<< 5.0.9) Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl-eddy-nonfree/fsl-5.0-eddy-nonfree_5.0.9-1~nd16.04+1_i386.deb Size: 281546 SHA256: 5224d228a9c5f5541a8dde2e6444f52ced9df3adc8025e3e54937ba7d1026db3 SHA1: 55e18e8355c42b3c89f12b10b584263646072423 MD5sum: cdb914ff7871c274b1b930732b1c7bd1 Description: correcting eddy currents and movements in diffusion data This package provide the 'eddy' component of the FSL MRI data analysis suite. Since FSL 5.0.9 eddy is no longer included in the main fsl package, because its sources are no longer publicly available. Package: fsl-core Source: fsl Version: 5.0.9-1~nd+1+nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 43 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.9-1~nd+1+nd16.04+1_all.deb Size: 21310 SHA256: cf5175cd8793e2cb5c0e14aa94d773d2df88009006b275e51c291b0ca957856f SHA1: e59016ce68b1cf9b31019fa91954bab86fba64b7 MD5sum: 4af4f2443b16b70a49e59739a299d3e9 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.14.20170103+git6-g605ff5c-1~ndall Architecture: all Maintainer: NeuroDebian Team Installed-Size: 19 Depends: matlab-psychtoolbox-3-nonfree (= 3.0.14.20170103+git6-g605ff5c-1~ndall), psychtoolbox-3-common (>= 3.0.14.20170103+git6-g605ff5c-1~ndall.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.14.20170103+git6-g605ff5c-1~ndall_all.deb Size: 4152 SHA256: 4fcb1cc803ef77f25613cc8a055c3351083aa1d6423ce5607e0a78ef3f196206 SHA1: 8d5dfebbd499280d9c13334393f3f796001702c5 MD5sum: fa417a692ba93a7a2f6799d4800929b3 Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.14.20170103+git6-g605ff5c-1~ndall Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 1548 Depends: octave-psychtoolbox-3 (>= 3.0.14.20170103+git6-g605ff5c-1~ndall.dfsg), psychtoolbox-3-common (>= 3.0.14.20170103+git6-g605ff5c-1~ndall.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.14.20170103+git6-g605ff5c-1~ndall_i386.deb Size: 395098 SHA256: 9b2ba0730ec05b8cfb359acb6961919034b7331a41fa892d0b38fe0def5db28b SHA1: a19f7b6d5efa197fa6ee65ef619586b3fc3ed834 MD5sum: 96b73a6eaa9676665eccf6eb66a9fd0b Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd+1+nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3036 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd+1+nd16.04+1_all.deb Size: 1771398 SHA256: 42ce1ae866a5e9b4d0564629b0c07cfe4ab85ecd7dbde7dd2e4d6779383d1541 SHA1: 2966fb73e4b00f10da6e23e344c5eadc3bd875d6 MD5sum: 93f47649bd0924f87b17227a8f8edf60 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.