Package: fsl Version: 5.0.9-3~nd80+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 55 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.9-3~nd80+1_all.deb Size: 21600 SHA256: 4dd0f6a51fd8bf6963d3fb1bf7e4f598bcd026351bdbc460f158eaac44b46cf5 SHA1: 4e9c04d60d5276a81b983f074ba6b87aedb6911e MD5sum: ef8d802c2d80938f5edac7371252b4e6 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.9-3~nd80+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 52 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.9-3~nd80+1_all.deb Size: 20252 SHA256: f8c008b210052ea7a4fb48efca38d5faabf7a74aab2bf5f5e8a209b15e6f078a SHA1: 21a63b12859d4c2dc71c25c12733ae9c7e647f61 MD5sum: 69439bf6ce6a168b3c7766f126d5b0f2 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-core Source: fsl Version: 5.0.9-3~nd80+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 70 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.9-3~nd80+1_all.deb Size: 21538 SHA256: efe6918236ff441b27c16f5652d123ed24c4ffbdebfc1f2dd22011ba6a644f3e SHA1: 3f9ac8b62877daeac20f3bbcb71b6eff87cfb008 MD5sum: 5bd3e7324731684e832960e5f1a52324 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.14.20170103+git6-g605ff5c-1~ndall Architecture: all Maintainer: NeuroDebian Team Installed-Size: 19 Depends: matlab-psychtoolbox-3-nonfree (= 3.0.14.20170103+git6-g605ff5c-1~ndall), psychtoolbox-3-common (>= 3.0.14.20170103+git6-g605ff5c-1~ndall.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.14.20170103+git6-g605ff5c-1~ndall_all.deb Size: 4152 SHA256: 4fcb1cc803ef77f25613cc8a055c3351083aa1d6423ce5607e0a78ef3f196206 SHA1: 8d5dfebbd499280d9c13334393f3f796001702c5 MD5sum: fa417a692ba93a7a2f6799d4800929b3 Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: python-fsl Source: fslpy Version: 0.10.0-1~nd80+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 474 Depends: neurodebian-popularity-contest, python-lxml, python-nibabel, cython, python, python-indexed-gzip, python-matplotlib, python-numpy, python-six, python-sphinx, python-sphinx-rtd-theme, python:any (<< 2.8), python:any (>= 2.7.5-5~) Recommends: python-wxgtk3.0 Conflicts: fsl-melview (<= 1.0.1+git9-ge661e05~dfsg.1-1) Provides: python2.7-fsl Priority: optional Section: non-free/python Filename: pool/non-free/f/fslpy/python-fsl_0.10.0-1~nd80+1_all.deb Size: 95040 SHA256: 7fc509cb38946b2932ef737582e47f4c69f00e19c41b10535d3008c45e5bb873 SHA1: 873dd270f53c5b20c94cf5ed9885a9d9408c1d2e MD5sum: fa8140ae0fe2bc45aa81d2877feaf394 Description: FSL Python library Support library for FSL. . This package provides the Python 2 module. Package: python-props Source: props Version: 0.9.14-1~nd80+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 665 Depends: neurodebian-popularity-contest, python-wxgtk3.0, python-matplotlib, python-numpy, python-six, python-sphinx, python-sphinx-rtd-theme, python:any (<< 2.8), python:any (>= 2.7.5-5~) Provides: python2.7-props Priority: optional Section: non-free/python Filename: pool/non-free/p/props/python-props_0.9.14-1~nd80+1_all.deb Size: 118480 SHA256: f42857048c22cf8d88a403581ef8a3f0c89de252e3d6ac44123cab3bd36022aa SHA1: 2f3bd65ea8880933ece91ea16e300e997c1bb5db MD5sum: 088232e5d02b0ff4c514337432a09cbd Description: Python descriptor framework Event programming framework with the ability for automatic CLI generation, and automatic GUI generation (with wxPython). . This package provides the Python 2 module. Package: python3-fsl Source: fslpy Version: 0.10.0-1~nd80+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 470 Depends: neurodebian-popularity-contest, python3-lxml, python3-nibabel, cython3, python3-indexed-gzip, python3-matplotlib, python3-numpy, python3-six, python3-sphinx, python3-sphinx-rtd-theme, python3:any (>= 3.3.2-2~) Priority: optional Section: non-free/python Filename: pool/non-free/f/fslpy/python3-fsl_0.10.0-1~nd80+1_all.deb Size: 94830 SHA256: 63e4251a6b109561081e8fc63f490d582a7ebdc853dd113eab75f385becd4f92 SHA1: e6a88dd8aecf0cc7c21d73c615f92d349d14c32b MD5sum: 69b01f45ada25c819a3d8238f1261939 Description: FSL Python library Support library for FSL. . This package provides the Python 3 module. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3063 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd70+1_all.deb Size: 2051872 SHA256: c9772d066da29f69860ae42cbca9805917dbeb520fb1f7614c49531e47dc66d0 SHA1: 3533625c940936aec15a317cdaaa12adb9e00082 MD5sum: 9ffed1c52f0c7bba4c04bdb549847ed1 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.