Package: fsl Version: 5.0.9-4~nd14.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 55 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.9-4~nd14.04+1_all.deb Size: 21572 SHA256: 2c4f1c1da48251d9ba4a842e16eef58532b0ce8db06d2c9ff1d43b085933c208 SHA1: d7a7de5fc66e2f3612610e42db5a7156a024056c MD5sum: 3e5d8c4fa8e56bd6f1dadaa8cb48e29d Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.9-4~nd14.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 52 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.9-4~nd14.04+1_all.deb Size: 20226 SHA256: 36703420de9c9f2c463a45c0f7c0ea0698dbbd2daa2a04c16056272bd8cc4e61 SHA1: 04608e8d48e984ce01e40141e88b77129804e920 MD5sum: 32dee5750fc021df6273cde56d69fe2a Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-core Source: fsl Version: 5.0.9-4~nd14.04+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 37512 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk, tcl, bc, dc, python, libjs-excanvas, libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libgd3 (>= 2.1.0~alpha~), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4) Recommends: fsl-atlases, fsl-5.0-eddy-nonfree, fslview Suggests: fsl-feeds, fsl-5.0-gpu, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.9-4~nd14.04+1_amd64.deb Size: 7645012 SHA256: 8579b6ba8268c389a1b866999f50b2c4f95f7a75b6e7f5b72f983867ab18872a SHA1: 8868dce23073c4723bf40d861fb5aa0cc07e2ef0 MD5sum: d664a805a9aee8a36a78a9934af9afcb Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-eddy-nonfree Source: fsl-eddy-nonfree Version: 5.0.9-1~nd14.04+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 794 Depends: neurodebian-popularity-contest, fsl-5.0-core (>= 5.0.9-1~), libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libnewmat10ldbl, libstdc++6 (>= 4.4.0) Conflicts: fsl-5.0-core (<< 5.0.9) Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl-eddy-nonfree/fsl-5.0-eddy-nonfree_5.0.9-1~nd14.04+1_amd64.deb Size: 254868 SHA256: ac52be6b5b4c93e80b1ab146bbace64c68ee548560e15e5ded985158cc9ce485 SHA1: afff1f2a41bdd694123ee2c28705b757308b1187 MD5sum: 6fe2532f41145ffdeae6d481491ba9cd Description: correcting eddy currents and movements in diffusion data This package provide the 'eddy' component of the FSL MRI data analysis suite. Since FSL 5.0.9 eddy is no longer included in the main fsl package, because its sources are no longer publicly available. Package: fsl-core Source: fsl Version: 5.0.9-4~nd14.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 70 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.9-4~nd14.04+1_all.deb Size: 21426 SHA256: d064296aedf5a65a674fa7ca9e96b0fdbe50f3b089fb45fd6c676b242bb23dce SHA1: d2bbac35a0236a4b83040e6c769a8c260202c216 MD5sum: 04d6f78e2c957fd21e00b45d253ae115 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.14.20170611-1~ndall Architecture: all Maintainer: NeuroDebian Team Installed-Size: 19 Depends: matlab-psychtoolbox-3-nonfree (= 3.0.14.20170611-1~ndall), psychtoolbox-3-common (>= 3.0.14.20170611-1~ndall.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.14.20170611-1~ndall_all.deb Size: 4160 SHA256: 272cea9125ef32e5ce4ebab7aad2daa579662171a5e1d7f69a8540eedc7a5595 SHA1: 2db5ffdfac2e4aafb90e45b834ed0bd60de76646 MD5sum: 40e8dfce1ee7a617c5eb4c66cdca3394 Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.14.20170611-1~ndall Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 5046 Depends: psychtoolbox-3-lib (>= 3.0.14.20170611-1~ndall.dfsg), psychtoolbox-3-common (>= 3.0.14.20170611-1~ndall.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libopenal1, libpciaccess0, libusb-1.0-0 (>= 2:1.0.9~), libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.14.20170611-1~ndall_amd64.deb Size: 1062638 SHA256: 8d51b312fd19684eeb0d6bd8e88d994ff1b0a040b6d192d800651df67768771a SHA1: 76ab6c9186f312d30e59e27afb3224108f268c6f MD5sum: df3a6b71bbd4d6f1f8f27a2c70d9274b Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.14.20170611-1~ndall Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 1783 Depends: octave-psychtoolbox-3 (>= 3.0.14.20170611-1~ndall.dfsg), psychtoolbox-3-common (>= 3.0.14.20170611-1~ndall.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.14.20170611-1~ndall_amd64.deb Size: 407948 SHA256: 98a5f9317f9ae1f5f06f9a9d2bc729cb9dadde057b431bce3cf83ff6c6dd5fae SHA1: f09460926a13afa6e76434a675b3704b0ac101e4 MD5sum: a9d567f5d922ace2d504ccc1b0077fe2 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: python-props Source: props Version: 0.9.14-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 665 Depends: neurodebian-popularity-contest, python-wxgtk3.0, python:any (>= 2.7.5-5~), python-six, python-numpy, python-matplotlib, python-sphinx, python:any (<< 2.8), python-sphinx-rtd-theme Provides: python2.7-props Priority: optional Section: non-free/python Filename: pool/non-free/p/props/python-props_0.9.14-1~nd14.04+1_all.deb Size: 118350 SHA256: c9ff495d2e9c0ca6fb79c4fc4f887af8240b8c855f4b6c9b43878a6d4c5ad66a SHA1: e447e994d1f2ac4625a760ef2f4a64802d780370 MD5sum: db80cb4e0132b79686df6acd3d2de56b Description: Python descriptor framework Event programming framework with the ability for automatic CLI generation, and automatic GUI generation (with wxPython). . This package provides the Python 2 module. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd12.10+1+nd13.04+1+nd13.10+1+nd14.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3020 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd12.10+1+nd13.04+1+nd13.10+1+nd14.04+1_all.deb Size: 1771702 SHA256: 2bf1087b73a5ae7c163ee7d37e5cbb911f3b5d22350b21f3703202cfe53362b4 SHA1: 20fc295238e534c298d4fbe04e9514189749866b MD5sum: 2df66e108c5e49eff77c0b0adb7ad92e Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.