Package: datalad Version: 0.9.1-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 123 Depends: neurodebian-popularity-contest, python-argcomplete, python-datalad (= 0.9.1-1~nd14.04+1), python Homepage: http://datalad.org Priority: optional Section: science Filename: pool/main/d/datalad/datalad_0.9.1-1~nd14.04+1_all.deb Size: 72358 SHA256: 173299920d4773c66a3bfbbbe72d54e1da8ca4662191fb2aefea5cc972bd40d1 SHA1: 0ed0ff84e0bc910ea5ca32aea25904424efd7e43 MD5sum: 0f4a8772da94d98d87a00bb88f38a61a Description: data files crawler and data distribution DataLad is a data distribution providing access to a wide range of data resources already available online (initially aiming at neuroscience domain). Using git-annex as its backend for data logistics it provides following facilities . - crawling of web sites to automatically prepare and update git-annex repositories with content from online websites, S3, etc - command line interface for manipulation of collections of datasets (install, uninstall, update, publish, save, etc.) and separate files/directories (add, get), as well as search within aggregated meta-data . This package provides the command line tool. Install without Recommends if you need only core functionality. Package: fail2ban Version: 0.9.7-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1253 Depends: neurodebian-popularity-contest, python:any (<< 2.8), python, python:any (>= 2.7.5-5~), lsb-base (>= 2.0-7) Recommends: iptables, whois, python-pyinotify Suggests: mailx, system-log-daemon, monit, python-systemd Homepage: http://www.fail2ban.org Priority: optional Section: net Filename: pool/main/f/fail2ban/fail2ban_0.9.7-1~nd14.04+1_all.deb Size: 263184 SHA256: 1845d2b63439b839dd22c15acae7ed222a540a69b7e51e770cdc2c20c5bc3c35 SHA1: d80487781cb7548b2ecf033cbc8f2bf76eee298e MD5sum: 9065582859bbeec8910489a8a66df202 Description: ban hosts that cause multiple authentication errors Fail2ban monitors log files (e.g. /var/log/auth.log, /var/log/apache/access.log) and temporarily or persistently bans failure-prone addresses by updating existing firewall rules. Fail2ban allows easy specification of different actions to be taken such as to ban an IP using iptables or hostsdeny rules, or simply to send a notification email. . By default, it comes with filter expressions for various services (sshd, apache, qmail, proftpd, sasl etc.) but configuration can be easily extended for monitoring any other text file. All filters and actions are given in the config files, thus fail2ban can be adopted to be used with a variety of files and firewalls. Following recommends are listed: . - iptables -- default installation uses iptables for banning. You most probably need it - whois -- used by a number of *mail-whois* actions to send notification emails with whois information about attacker hosts. Unless you will use those you don't need whois - python3-pyinotify -- unless you monitor services logs via systemd, you need pyinotify for efficient monitoring for log files changes Package: git-annex-metadata-gui Version: 0.0.0~pre1-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 87 Depends: neurodebian-popularity-contest, python3-git-annex-adapter, python3-pyqt5, python3:any (>= 3.3.2-2~), python3 Homepage: https://github.com/alpernebbi/git-annex-metadata-gui Priority: optional Section: python Filename: pool/main/g/git-annex-metadata-gui/git-annex-metadata-gui_0.0.0~pre1-1~nd14.04+1_all.deb Size: 10318 SHA256: 203ec15728c35e9495f6d0abc1a3d2e564ebb35a3b6ab6708f65af00b85f4a13 SHA1: c4ac625231e4edc2c62601ebad30aafaf6816276 MD5sum: 83cbc57483f8cee3cb9902f093a27fb0 Description: graphical interface to the metadata functionality of git-annex Flexible graphical user interface to view and manipulate metadata of git-annex repositories. Package: git-annex-remote-rclone Version: 0.5-1~ndall+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 23 Depends: neurodebian-popularity-contest, git-annex | git-annex-standalone, rclone Homepage: https://github.com/DanielDent/git-annex-remote-rclone Priority: optional Section: utils Filename: pool/main/g/git-annex-remote-rclone/git-annex-remote-rclone_0.5-1~ndall+1_all.deb Size: 7842 SHA256: 0b1d65c740ce1073ecdae6db121d304fe02c4bb95df552326894118a65b38319 SHA1: 34a2323c4387e61c4a69617150c463f9a7b772c5 MD5sum: 00c5a0407a998eba72d4f5eb0ad71189 Description: rclone-based git annex special remote This is a wrapper around rclone to make any destination supported by rclone usable with git-annex. . Cloud storage providers supported by rclone currently include: * Google Drive * Amazon S3 * Openstack Swift / Rackspace cloud files / Memset Memstore * Dropbox * Google Cloud Storage * Microsoft One Drive * Hubic * Backblaze B2 * Yandex Disk . Note: although Amazon Cloud Drive support is implemented, it is broken ATM see https://github.com/DanielDent/git-annex-remote-rclone/issues/22 . Package: golang-github-ncw-rclone-dev Source: rclone Version: 1.36-1~ndall0 Architecture: all Maintainer: Debian Go Packaging Team Installed-Size: 1198 Depends: golang-bazil-fuse-dev, golang-github-aws-aws-sdk-go-dev, golang-github-mreiferson-go-httpclient-dev, golang-github-ncw-go-acd-dev, golang-github-ncw-swift-dev, golang-github-pkg-errors-dev, golang-github-rfjakob-eme-dev, golang-github-skratchdot-open-golang-dev, golang-github-spf13-cobra-dev, golang-github-spf13-pflag-dev, golang-github-stacktic-dropbox-dev, golang-github-stretchr-testify-dev, golang-github-tsenart-tb-dev, golang-github-unknwon-goconfig-dev, golang-github-vividcortex-ewma-dev, golang-golang-x-crypto-dev, golang-golang-x-net-dev, golang-golang-x-oauth2-google-dev, golang-golang-x-sys-dev, golang-golang-x-text-dev, golang-google-api-dev Built-Using: go-md2man (= 1.0.6+ds-1), golang-1.7 (= 1.7.4-2), golang-bazil-fuse (= 0.0~git20160811.0.371fbbd-2), golang-blackfriday (= 1.4+git20161003.40.5f33e7b-1), golang-github-aws-aws-sdk-go (= 1.1.14+dfsg-2), golang-github-davecgh-go-spew (= 1.1.0-1), golang-github-go-ini-ini (= 1.8.6-2), golang-github-google-go-querystring (= 0.0~git20151028.0.2a60fc2-1), golang-github-jmespath-go-jmespath (= 0.2.2-2), golang-github-kr-fs (= 0.0~git20131111.0.2788f0d-2), golang-github-ncw-go-acd (= 0.0~git20161119.0.7954f1f-1), golang-github-ncw-swift (= 0.0~git20160617.0.b964f2c-2), golang-github-pkg-errors (= 0.8.0-1), golang-github-pkg-sftp (= 0.0~git20160930.0.4d0e916-1), golang-github-pmezard-go-difflib (= 1.0.0-1), golang-github-rfjakob-eme (= 1.0-2), golang-github-shurcool-sanitized-anchor-name (= 0.0~git20160918.0.1dba4b3-1), golang-github-skratchdot-open-golang (= 0.0~git20160302.0.75fb7ed-2), golang-github-spf13-cobra (= 0.0~git20161229.0.1dd5ff2-1), golang-github-spf13-pflag (= 0.0~git20161024.0.5ccb023-1), golang-github-stacktic-dropbox (= 0.0~git20160424.0.58f839b-2), golang-github-tsenart-tb (= 0.0~git20151208.0.19f4c3d-2), golang-github-unknwon-goconfig (= 0.0~git20160828.0.5aa4f8c-3), golang-github-vividcortex-ewma (= 0.0~git20160822.20.c595cd8-3), golang-go.crypto (= 1:0.0~git20170407.0.55a552f+REALLY.0.0~git20161012.0.5f31782-1), golang-golang-x-net-dev (= 1:0.0+git20161013.8b4af36+dfsg-3), golang-golang-x-oauth2 (= 0.0~git20161103.0.36bc617-4), golang-golang-x-sys (= 0.0~git20161122.0.30237cf-1), golang-google-api (= 0.0~git20161128.3cc2e59-2), golang-google-cloud (= 0.5.0-2), golang-testify (= 1.1.4+ds-1), golang-x-text (= 0.0~git20161013.0.c745997-2) Homepage: https://github.com/ncw/rclone Priority: extra Section: devel Filename: pool/main/r/rclone/golang-github-ncw-rclone-dev_1.36-1~ndall0_all.deb Size: 201776 SHA256: 88274c394a26a9f8f5f4766873acde54192537112e0f0e24ddfff1b9a5361f7c SHA1: fb44d37c3df4bdf641c85720b35bbfd835870a05 MD5sum: fdc9cfc7b0a9e18cdc83ed2fbce61433 Description: go source code of rclone Rclone is a program to sync files and directories between the local file system and a variety of commercial cloud storage providers. . This package contains rclone's source code. Package: heudiconv Version: 0.1+git94-g85a2afb-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 128 Depends: neurodebian-popularity-contest, python, python-dcmstack, python-dicom, python-nibabel, python-numpy, python-nipype Recommends: mricron, dcm2niix Homepage: https://github.com/nipy/heudiconv Priority: optional Section: science Filename: pool/main/h/heudiconv/heudiconv_0.1+git94-g85a2afb-1~nd14.04+1_all.deb Size: 19564 SHA256: 94332ef1669da38c6f1f1e4d476b90274003985d8458b80a82ad8a8957fbf341 SHA1: 15a3d7abf9daf2c575f93b58039fc186d899d779 MD5sum: 0f513364573256843bd79dc3d31fc22a Description: DICOM converter with support for structure heuristics This is a flexible dicom converter for organizing brain imaging data into structured directory layouts. It allows for flexible directory layouts and naming schemes through customizable heuristics implementations. It only converts the necessary dicoms, not everything in a directory. It tracks the provenance of the conversion from dicom to nifti in w3c prov format. Package: nuitka Version: 0.5.27+ds-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3572 Depends: neurodebian-popularity-contest, gcc (>= 5.0) | g++ (>= 4.4) | clang (>= 3.0), scons (>= 2.0.0), python-appdirs | base-files (<< 7.2), python3-appdirs | base-files (<< 7.2), python-dev (>= 2.6.6-2), python:any (>= 2.7.5-5~) Recommends: python-lxml (>= 2.3), python-pyqt5, strace, chrpath Suggests: ccache Homepage: http://nuitka.net Priority: optional Section: python Filename: pool/main/n/nuitka/nuitka_0.5.27+ds-1~nd14.04+1_all.deb Size: 702296 SHA256: b3ec60b0a74b899e87b61381c325c5fe37f299183f77a96f1f9d742c2099a041 SHA1: 9833790dd7b3696397cd1b704162e1716082e2ef MD5sum: f5fb5741f0236eaad6f324e62b8f6541 Description: Python compiler with full language support and CPython compatibility This Python compiler achieves full language compatibility and compiles Python code into compiled objects that are not second class at all. Instead they can be used in the same way as pure Python objects. Package: psychopy Version: 1.85.3.dfsg-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 16171 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), python-pyglet | python-pygame, python-opengl, python-numpy, python-scipy, python-matplotlib, python-lxml, python-configobj Recommends: python-wxgtk3.0, python-wxgtk2.8, python-pyglet, python-pygame, python-openpyxl, python-opencv, python-imaging, python-serial, python-pyo, python-psutil, python-requests, python-gevent, python-msgpack, python-yaml, python-xlib, python-pandas, libxxf86vm1, ipython, python-future Suggests: python-iolabs, python-pyxid, libavbin0 Conflicts: libavbin0 (= 7-4+b1) Homepage: http://www.psychopy.org Priority: optional Section: science Filename: pool/main/p/psychopy/psychopy_1.85.3.dfsg-1~nd14.04+1_all.deb Size: 6624312 SHA256: 0c107f7cac1066ba8d587d98afcd9436f8d006f67075a9f479120b9d1d42a35b SHA1: 1964f6bbc5e35808be0a2b42aa19b70e26c18967 MD5sum: 877f8cf0e4f323e42b7da96dd0c12e17 Description: environment for creating psychology stimuli in Python PsychoPy provides an environment for creating psychology stimuli using Python scripting language. It combines the graphical strengths of OpenGL with easy Python syntax to give psychophysics a free and simple stimulus presentation and control package. . The goal is to provide, for the busy scientist, tools to control timing and windowing and a simple set of pre-packaged stimuli and methods. PsychoPy features . - IDE GUI for coding in a powerful scripting language (Python) - Builder GUI for rapid development of stimulation sequences - Use of hardware-accelerated graphics (OpenGL) - Integration with Spectrascan PR650 for easy monitor calibration - Simple routines for staircase and constant stimuli experimental methods as well as curve-fitting and bootstrapping - Simple (or complex) GUIs via wxPython - Easy interfaces to joysticks, mice, sound cards etc. via PyGame - Video playback (MPG, DivX, AVI, QuickTime, etc.) as stimuli Python-Version: 2.7 Package: psychtoolbox-3-common Source: psychtoolbox-3 Version: 3.0.14.20170611.dfsg1-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 221247 Depends: neurodebian-popularity-contest Recommends: alsa-utils Suggests: gnuplot Homepage: http://psychtoolbox.org Priority: extra Section: science Filename: pool/main/p/psychtoolbox-3/psychtoolbox-3-common_3.0.14.20170611.dfsg1-1~nd14.04+1_all.deb Size: 24438458 SHA256: 0634cbd85707a1dcf822c38c864799466e218b265c8df3c04c480b57d6c8a35e SHA1: 67c7815dd4d0d656a16489e48df4f9fe5b6564af MD5sum: 11d2ddf6be5b538d32fa45838b7d6749 Description: toolbox for vision research -- arch/interpreter independent part Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains architecture independent files (such as .m scripts) Package: python-click Version: 6.6-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 278 Depends: neurodebian-popularity-contest, python:any (>= 2.7.5-5~), python:any (<< 2.8), python-colorama Homepage: https://github.com/mitsuhiko/click Priority: optional Section: python Filename: pool/main/p/python-click/python-click_6.6-1~nd14.04+1_all.deb Size: 56098 SHA256: adcaa21cc21f1669088c365e4785f139090c2a9b07ca486bc606883e26999b5e SHA1: 970bdc07b050871f4e08dfc01056ead038e35b46 MD5sum: 84b4bbc574f864f57fd71ce71bbfcaeb Description: Simple wrapper around optparse for powerful command line utilities - Python 2.7 Click is a Python package for creating beautiful command line interfaces in a composable way with as little code as necessary. It's the "Command Line Interface Creation Kit". It's highly configurable but comes with sensible defaults out of the box. . It aims to make the process of writing command line tools quick and fun while also preventing any frustration caused by the inability to implement an intended CLI API. . This is the Python 2 compatible package. Package: python-datalad Source: datalad Version: 0.9.1-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3827 Depends: neurodebian-popularity-contest, git-annex (>= 6.20170525~) | git-annex-standalone (>= 6.20170525~), patool, python-appdirs, python-git (>= 2.1.6~), python-github, python-humanize, python-iso8601, python-keyrings.alt | python-keyring (<= 8), python-secretstorage | python-keyring (<< 9.2), python-keyring, python-mock, python-msgpack, python-pyld, python-requests, python-tqdm, python-simplejson, python-six (>= 1.8.0~), python-wrapt, python:any (<< 2.8), python:any (>= 2.7.5-5~), python-jsmin, python-boto Recommends: python-html5lib, python-httpretty, python-nose, python-numpy, python-requests-ftp, python-scrapy, python-vcr, python-yaml Suggests: python-bs4 Provides: python2.7-datalad Homepage: http://datalad.org Priority: optional Section: python Filename: pool/main/d/datalad/python-datalad_0.9.1-1~nd14.04+1_all.deb Size: 743346 SHA256: fbf4fbf18d6b3fda4c184284865b76583c04a7be8e6f018d42edd8a9922717af SHA1: 019641a8e7bcd7f6aec8932f6502792e89277fd8 MD5sum: fa7705a5c2669c832aaea8edb2607ab8 Description: data files crawler and data distribution (Python 2) DataLad is a data distribution providing access to a wide range of data resources already available online (initially aiming at neuroscience domain). Using git-annex as its backend for data logistics it provides following facilities . - crawling of web sites to automatically prepare and update git-annex repositories with content from online websites, S3, etc - command line interface for manipulation of collections of datasets (install, uninstall, update, publish, save, etc.) and separate files/directories (add, get), as well as search within aggregated meta-data . This package installs the module for Python 2, and Recommends install all dependencies necessary for crawling, publishing, and testing. If you need base functionality, install without Recommends. Package: python-dipy Source: dipy Version: 0.12.0-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 6890 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), python-numpy (>= 1:1.7.1~), python-scipy, python-dipy-lib (>= 0.12.0-1~nd14.04+1) Recommends: python-matplotlib, python-vtk, python-nose, python-nibabel, python-tables Suggests: ipython Provides: python2.7-dipy Homepage: http://dipy.org Priority: extra Section: python Filename: pool/main/d/dipy/python-dipy_0.12.0-1~nd14.04+1_all.deb Size: 3019816 SHA256: 5f9ca94b1a4dbf06b085c888d6aa8ffd3f10b74d33cefe9c6e1ba97399542ca2 SHA1: 9832d9481262e70ab242c336198debe05388464a MD5sum: 57f4b98658f0b9a609cd0bc527e77308 Description: Python library for the analysis of diffusion MRI datasets DIPY is a software project for computational neuroanatomy. It focuses on diffusion magnetic resonance imaging (dMRI) analysis and tractography but also contains implementations of other computational imaging methods such as denoising and registration that are applicable to the greater medical imaging and image processing communities. Additionally, DIPY is an international project which brings together scientists across labs and countries to share their state-of-the-art code and expertise in the same codebase, accelerating scientific research in medical imaging. . Here are some of the highlights: - Reconstruction algorithms: CSD, DSI, GQI, DTI, DKI, QBI, SHORE and MAPMRI - Fiber tracking algorithms: deterministic and probabilistic - Native linear and nonlinear registration of images - Fast operations on streamlines (selection, resampling, registration) - Tractography segmentation and clustering - Many image operations, e.g., reslicing or denoising with NLMEANS - Estimation of distances/correspondences between streamlines and connectivity matrices - Interactive visualization of streamlines in the space of images Python-Version: 2.7 Package: python-dipy-doc Source: dipy Version: 0.12.0-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 13946 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-dipy Homepage: http://dipy.org Priority: extra Section: doc Filename: pool/main/d/dipy/python-dipy-doc_0.12.0-1~nd14.04+1_all.deb Size: 10511706 SHA256: 329db668133c9c300074474792a39a258073fae091a102cd6d25ec0f7f1629c9 SHA1: 3293a7831cf0dd033d24b4aabd2b6683bf34f5b6 MD5sum: 93f2f28dfadf0335ed8d6dd29a57444b Description: Python library for the analysis of diffusion MRI datasets -- documentation DIPY is a library for the analysis of diffusion magnetic resonance imaging data. . This package provides the documentation in HTML format. Package: python-git Version: 2.1.6-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1618 Depends: neurodebian-popularity-contest, git (>= 1:1.7) | git-core (>= 1:1.5.3.7), python-gitdb (>= 2), python:any (>= 2.7.5-5~), python:any (<< 2.8) Suggests: python-smmap, python-git-doc Homepage: https://github.com/gitpython-developers/GitPython Priority: optional Section: python Filename: pool/main/p/python-git/python-git_2.1.6-1~nd14.04+1_all.deb Size: 301298 SHA256: eb1ffac1f7a0bb53e77c6995f84e60bdaa26504baa2bc7c539309502c56a4d63 SHA1: 9d6b8e235efd2ef3515cd00c1e1185a198a2a4d9 MD5sum: 3df5eb5a525049f27684ac16e4defd2b Description: Python library to interact with Git repositories - Python 2.7 python-git provides object model access to a Git repository, so Python can be used to manipulate it. Repository objects can be opened or created, which can then be traversed to find parent commit(s), trees, blobs, etc. . This package provides the Python 2.7 module. Python-Version: 2.7 Package: python-git-doc Source: python-git Version: 2.1.6-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 965 Depends: neurodebian-popularity-contest, libjs-sphinxdoc (>= 1.0) Homepage: https://github.com/gitpython-developers/GitPython Priority: optional Section: doc Filename: pool/main/p/python-git/python-git-doc_2.1.6-1~nd14.04+1_all.deb Size: 128664 SHA256: dba86d4117f0442c03339f58c15fb542c8c689243bad3f3b9e215ad318980d02 SHA1: d5e0c0459c6b9d5d1bbc3ab8c7d34283e6e03eb9 MD5sum: da67cc6e62cc170577daf804aa6c261c Description: Python library to interact with Git repositories - docs python-git provides object model access to a Git repository, so Python can be used to manipulate it. Repository objects can be opened or created, which can then be traversed to find parent commit(s), trees, blobs, etc. . This package provides the documentation. Package: python-mvpa2 Source: pymvpa2 Version: 2.6.1-2~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 8480 Depends: neurodebian-popularity-contest, python, python-numpy, python:any (<< 2.8), python:any (>= 2.7.5-5~), python-mvpa2-lib (>= 2.6.1-2~nd14.04+1) Recommends: python-h5py, python-lxml, python-matplotlib, python-mdp, python-nibabel, python-nipy, python-psutil, python-psyco, python-pywt, python-reportlab, python-scipy, python-sklearn, python-shogun, liblapack-dev, python-pprocess, python-statsmodels, python-joblib, python-duecredit, python-mock Suggests: fslview, fsl, python-mvpa2-doc, python-nose, python-openopt, python-rpy2 Provides: python2.7-mvpa2 Homepage: http://www.pymvpa.org Priority: optional Section: python Filename: pool/main/p/pymvpa2/python-mvpa2_2.6.1-2~nd14.04+1_all.deb Size: 5101062 SHA256: e86711692defecbf63140e93e2eb12573c3ec69036f396b1ecd5d220ad238efc SHA1: f9e32a387fb9c3e9e37315da8082986d2678681f MD5sum: f429e100296258feb1a15318dacfc0c9 Description: multivariate pattern analysis with Python v. 2 PyMVPA eases pattern classification analyses of large datasets, with an accent on neuroimaging. It provides high-level abstraction of typical processing steps (e.g. data preparation, classification, feature selection, generalization testing), a number of implementations of some popular algorithms (e.g. kNN, Ridge Regressions, Sparse Multinomial Logistic Regression), and bindings to external machine learning libraries (libsvm, shogun). . While it is not limited to neuroimaging data (e.g. fMRI, or EEG) it is eminently suited for such datasets. . This is a package of PyMVPA v.2. Previously released stable version is provided by the python-mvpa package. Python-Version: 2.7 Package: python-mvpa2-doc Source: pymvpa2 Version: 2.6.1-2~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 31547 Depends: neurodebian-popularity-contest, libjs-jquery, libjs-underscore Suggests: python-mvpa2, python-mvpa2-tutorialdata, ipython-notebook Homepage: http://www.pymvpa.org Priority: optional Section: doc Filename: pool/main/p/pymvpa2/python-mvpa2-doc_2.6.1-2~nd14.04+1_all.deb Size: 4731668 SHA256: 2d156cffb50684f250e925c020e6babc0bd85f35db84a545b4c9ae5ab9a0a5b4 SHA1: 724643cba27a1fae109a1ea1ee91e064b0440169 MD5sum: 04bdc89a108f6b72452b9ffc5646206a Description: documentation and examples for PyMVPA v. 2 This is an add-on package for the PyMVPA framework. It provides a HTML documentation (tutorial, FAQ etc.), and example scripts. In addition the PyMVPA tutorial is also provided as IPython notebooks. Package: python-nibabel Source: nibabel Version: 2.2.0-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 64622 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), python-numpy, python-scipy Recommends: python-dicom, python-fuse, python-mock Suggests: python-nibabel-doc Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: python Filename: pool/main/n/nibabel/python-nibabel_2.2.0-1~nd14.04+1_all.deb Size: 2201650 SHA256: 8f9170eaec90a09f9561e5944ca24ecc37ed0e6bbbf22aed79d0067c064b5d83 SHA1: 8e04aacd2749a8d2c48e94f8a340bbcf98748f6e MD5sum: b949d62175e637727f55521cc582a290 Description: Python bindings to various neuroimaging data formats NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. . This package also provides a commandline tools: . - dicomfs - FUSE filesystem on top of a directory with DICOMs - nib-ls - 'ls' for neuroimaging files - parrec2nii - for conversion of PAR/REC to NIfTI images Package: python-nibabel-doc Source: nibabel Version: 2.2.0-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 22374 Depends: neurodebian-popularity-contest, libjs-jquery, libjs-mathjax Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: doc Filename: pool/main/n/nibabel/python-nibabel-doc_2.2.0-1~nd14.04+1_all.deb Size: 2693210 SHA256: 0a6456383e6a8a272a7315b99e7b01285dd1b46be4d0c4f2d8139db178bfabf5 SHA1: 8c1e5d2d866b1c111d6bc8a29a124c8570664950 MD5sum: 5825d01bf42b9309355f026028d34600 Description: documentation for NiBabel NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. . This package provides the documentation in HTML format. Package: python-nipy Source: nipy Version: 0.4.1-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3603 Depends: neurodebian-popularity-contest, python-numpy (>= 1:1.2), python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), python-scipy, python-nibabel, python-nipy-lib (>= 0.4.1-1~nd14.04+1) Recommends: python-matplotlib, mayavi2, python-sympy Suggests: python-mvpa Provides: python2.7-nipy Homepage: http://neuroimaging.scipy.org Priority: extra Section: python Filename: pool/main/n/nipy/python-nipy_0.4.1-1~nd14.04+1_all.deb Size: 781074 SHA256: 550f9a49a0e1b8b896f5912459691841b04dcb207a2b5de5880773234925066c SHA1: 1dec193f3e2fd362bbc927e358bb9b76569e4407 MD5sum: 63f1d987a6207661679b27fb6c6e9597 Description: Analysis of structural and functional neuroimaging data NiPy is a Python-based framework for the analysis of structural and functional neuroimaging data. It provides functionality for - General linear model (GLM) statistical analysis - Combined slice time correction and motion correction - General image registration routines with flexible cost functions, optimizers and re-sampling schemes - Image segmentation - Basic visualization of results in 2D and 3D - Basic time series diagnostics - Clustering and activation pattern analysis across subjects - Reproducibility analysis for group studies Python-Version: 2.7 Package: python-nipy-doc Source: nipy Version: 0.4.1-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 8257 Depends: neurodebian-popularity-contest, libjs-jquery, libjs-underscore Recommends: python-nipy Homepage: http://neuroimaging.scipy.org Priority: extra Section: doc Filename: pool/main/n/nipy/python-nipy-doc_0.4.1-1~nd14.04+1_all.deb Size: 1158458 SHA256: fe8e548e1a2ac9f5fa9b5ac9fe659181ed7e8006f006574b539c26c3d00e0b72 SHA1: 0273b447f5180e32e6e1c839f23ef30f99d489e0 MD5sum: 578c3f9a8e0a1ddaf2df6386a5bd7dea Description: documentation and examples for NiPy This package contains NiPy documentation in various formats (HTML, TXT) including * User manual * Developer guidelines * API documentation Package: python-pprocess Source: pprocess Version: 0.5-2~nd14.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 763 Depends: neurodebian-popularity-contest, python:any (>= 2.7.5-5~), python:any (<< 2.8) Provides: python2.7-pprocess Homepage: http://www.boddie.org.uk/python/pprocess.html Priority: optional Section: python Filename: pool/main/p/pprocess/python-pprocess_0.5-2~nd14.04+1_all.deb Size: 83314 SHA256: 24cc56298d142c8ff7575606cef8758104705119637eca9dfe92874a71079672 SHA1: f1b710aa5f49313d9c9c378e393b50030ff32f8d MD5sum: 9f10d675c169cde7a0ba275283e77f55 Description: elementary parallel programming for Python The pprocess module provides elementary support for parallel programming in Python using a fork-based process creation model in conjunction with a channel-based communications model implemented using socketpair and poll. On systems with multiple CPUs or multicore CPUs, processes should take advantage of as many CPUs or cores as the operating system permits. Package: python-pydotplus Version: 2.0.2-2~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 130 Depends: neurodebian-popularity-contest, graphviz, python-pyparsing (>= 2.0.1), python:any (<< 2.8), python:any (>= 2.7.5-5~) Suggests: python-pydotplus-doc Homepage: http://pydotplus.readthedocs.org/ Priority: optional Section: python Filename: pool/main/p/python-pydotplus/python-pydotplus_2.0.2-2~nd14.04+1_all.deb Size: 20388 SHA256: 5f88819d07201421714fcab105d3a6b51ad225054df0b13106c87365bdeab728 SHA1: 865976a4379048ce069808ad030eb95bac49c25b MD5sum: fd875b3f9f2ebf748766f0041697709c Description: interface to Graphviz's Dot language - Python 2.7 PyDotPlus is an improved version of the old pydot project that provides a Python Interface to Graphviz's Dot language. . Differences with pydot: * Compatible with PyParsing 2.0+. * Python 2.7 - Python 3 compatible. * Well documented. * CI Tested. . This package contains the Python 2.7 module. Package: python-pydotplus-doc Source: python-pydotplus Version: 2.0.2-2~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 755 Depends: neurodebian-popularity-contest, libjs-sphinxdoc (>= 1.0) Homepage: http://pydotplus.readthedocs.org/ Priority: optional Section: doc Filename: pool/main/p/python-pydotplus/python-pydotplus-doc_2.0.2-2~nd14.04+1_all.deb Size: 178594 SHA256: d41e0215066c4186949c7d75481e9679cc1b7776d784447b012e4f18b8b9a7b5 SHA1: 0b9e64843059d34f8a55edbfe71baeb50818cc9f MD5sum: 0ac2d05c292d25fe59cb5a9574efe10a Description: interface to Graphviz's Dot language - doc PyDotPlus is an improved version of the old pydot project that provides a Python Interface to Graphviz's Dot language. . Differences with pydot: * Compatible with PyParsing 2.0+. * Python 2.7 - Python 3 compatible. * Well documented. * CI Tested. . This package contains the documentation. Package: python-sparqlwrapper Source: sparql-wrapper-python Version: 1.7.6-3~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 120 Depends: neurodebian-popularity-contest, python:any (>= 2.7.5-5~), python-rdflib, python:any (<< 2.8) Homepage: http://rdflib.github.io/sparqlwrapper/ Priority: optional Section: python Filename: pool/main/s/sparql-wrapper-python/python-sparqlwrapper_1.7.6-3~nd14.04+1_all.deb Size: 22226 SHA256: 6365bf27cdddeb0dc5a835b486e3f95f6aeeef02411a1f1ed21fae48e8d90988 SHA1: c422fe5f0dff84d91d4d9675861590804335009e MD5sum: d806c9c5c61ccbf16dba02aeecf150f6 Description: SPARQL endpoint interface to Python This is a wrapper around a SPARQL service. It helps in creating the query URI and, possibly, convert the result into a more manageable format. . This is the Python 2 version of the package. Package: python-whoosh Version: 2.7.4+git6-g9134ad92-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1745 Depends: neurodebian-popularity-contest, python:any (<< 2.8), python:any (>= 2.7.5-5~) Suggests: python-whoosh-doc Homepage: http://bitbucket.org/mchaput/whoosh/ Priority: optional Section: python Filename: pool/main/p/python-whoosh/python-whoosh_2.7.4+git6-g9134ad92-1~nd14.04+1_all.deb Size: 290646 SHA256: f67951203ea32c81471f37234f9f62739b4722cee40b1328190847ce8e42df74 SHA1: 1d989e722177646f980b2516973f7ae4631fa0f9 MD5sum: 3d4d1c2b8ab7eb661fed920dafb8005a Description: pure-Python full-text indexing, search, and spell checking library (Python 2) Whoosh is a fast, pure-Python indexing and search library. Programmers can use it to easily add search functionality to their applications and websites. As Whoosh is pure Python, you don't have to compile or install a binary support library and/or make Python work with a JVM, yet indexing and searching is still very fast. Whoosh is designed to be modular, so every part can be extended or replaced to meet your needs exactly. . This package contains the python2 library Package: python-whoosh-doc Source: python-whoosh Version: 2.7.4+git6-g9134ad92-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2122 Pre-Depends: dpkg (>= 1.17.5) Depends: neurodebian-popularity-contest, libjs-sphinxdoc (>= 1.0) Replaces: python-whoosh (<< 2.1.0) Homepage: http://bitbucket.org/mchaput/whoosh/ Priority: extra Section: doc Filename: pool/main/p/python-whoosh/python-whoosh-doc_2.7.4+git6-g9134ad92-1~nd14.04+1_all.deb Size: 245598 SHA256: 34ae69c6b4cea3b8b61556142d73c52e7220c316951991be9d81a4c9957598c0 SHA1: 9e1a029509b1dc021e79fbda098a939d86e4e531 MD5sum: 351e8d2a632f7587bd8bd3392de9da1f Description: full-text indexing, search, and spell checking library (doc) Whoosh is a fast, pure-Python indexing and search library. Programmers can use it to easily add search functionality to their applications and websites. As Whoosh is pure Python, you don't have to compile or install a binary support library and/or make Python work with a JVM, yet indexing and searching is still very fast. Whoosh is designed to be modular, so every part can be extended or replaced to meet your needs exactly. . This package contains the library documentation for python-whoosh. Package: python-wrapt-doc Source: python-wrapt Version: 1.9.0-4~nd0~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 717 Depends: neurodebian-popularity-contest, libjs-sphinxdoc (>= 1.0) Homepage: https://github.com/GrahamDumpleton/wrapt Priority: optional Section: doc Filename: pool/main/p/python-wrapt/python-wrapt-doc_1.9.0-4~nd0~nd14.04+1_all.deb Size: 183972 SHA256: dd9c994d5c2c706e730e241108d6ab592ac71a8b607eb7837d2828ba1e16e37a SHA1: 3f6f33e42d896f303d568efb364881ce925306c6 MD5sum: 49632b4163fae5b4921ba2f7a5968a04 Description: decorators, wrappers and monkey patching. - doc The aim of the wrapt module is to provide a transparent object proxy for Python, which can be used as the basis for the construction of function wrappers and decorator functions. . The wrapt module focuses very much on correctness. It therefore goes way beyond existing mechanisms such as functools.wraps() to ensure that decorators preserve introspectability, signatures, type checking abilities etc. The decorators that can be constructed using this module will work in far more scenarios than typical decorators and provide more predictable and consistent behaviour. . To ensure that the overhead is as minimal as possible, a C extension module is used for performance critical components. An automatic fallback to a pure Python implementation is also provided where a target system does not have a compiler to allow the C extension to be compiled. . This package contains the documentation. Package: python3-click Source: python-click Version: 6.6-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 278 Depends: neurodebian-popularity-contest, python3:any (>= 3.3.2-2~), python3-colorama Homepage: https://github.com/mitsuhiko/click Priority: optional Section: python Filename: pool/main/p/python-click/python3-click_6.6-1~nd14.04+1_all.deb Size: 56188 SHA256: d05d135eb817cf33d2ccb3db9d41d481409848fe1c68d7e66eceb3b7a6525762 SHA1: 10fa4456113bfe8fb91fad9c45705f9145226b3f MD5sum: 2ca90cebb8a23c7374d69a7914107cd0 Description: Simple wrapper around optparse for powerful command line utilities - Python 3.x Click is a Python package for creating beautiful command line interfaces in a composable way with as little code as necessary. It's the "Command Line Interface Creation Kit". It's highly configurable but comes with sensible defaults out of the box. . It aims to make the process of writing command line tools quick and fun while also preventing any frustration caused by the inability to implement an intended CLI API. . This is the Python 3 compatible package. Package: python3-git Source: python-git Version: 2.1.6-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1614 Depends: neurodebian-popularity-contest, git (>= 1:1.7) | git-core (>= 1:1.5.3.7), python3-gitdb (>= 2), python3:any (>= 3.3.2-2~) Suggests: python-git-doc Homepage: https://github.com/gitpython-developers/GitPython Priority: optional Section: python Filename: pool/main/p/python-git/python3-git_2.1.6-1~nd14.04+1_all.deb Size: 300940 SHA256: a4dfe896bc145bdbf4d6dbe85af76714d61604bf8d1f71daa582d7d394d28e2a SHA1: 981326f8ad30e17ec471c7e875d619072200a7d9 MD5sum: 29899fc4ab6c4af6c30b44ca130ee5bb Description: Python library to interact with Git repositories - Python 3.x python-git provides object model access to a Git repository, so Python can be used to manipulate it. Repository objects can be opened or created, which can then be traversed to find parent commit(s), trees, blobs, etc. . This package provides the Python 3.x module. Package: python3-git-annex-adapter Source: git-annex-adapter Version: 0.0.0~pre1-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 58 Depends: neurodebian-popularity-contest, git-annex (>= 6.20160726~) | git-annex-standalone (>= 6.20160726~), python3:any (>= 3.3.2-2~) Homepage: https://github.com/alpernebbi/git-annex-adapter Priority: optional Section: python Filename: pool/main/g/git-annex-adapter/python3-git-annex-adapter_0.0.0~pre1-1~nd14.04+1_all.deb Size: 6812 SHA256: 873fa20a8eb97911cdeb8370e14ee2c873c48b12bd050f5bcdc210b358e7b431 SHA1: 92507e496b6bb639fcf72998104d9ce5e594840b MD5sum: 0f451ba440628e74f2c2289e04a97742 Description: call git-annex commands from within Python This is a minimalistic interface to git-annex. Commands are executed using subprocess and use their batch versions whenever possible. Package: python3-nibabel Source: nibabel Version: 2.2.0-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 64590 Depends: neurodebian-popularity-contest, python3-numpy, python3-scipy Suggests: python-nibabel-doc, python3-dicom, python3-fuse, python3-mock Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: python Filename: pool/main/n/nibabel/python3-nibabel_2.2.0-1~nd14.04+1_all.deb Size: 2194514 SHA256: 49fac48d35d81d3f210c2122a333eabac43cf0ef68dca8a56c07678bd5e339bb SHA1: 9d76ab83e78aad4b833e897a6d41e38e018c9f16 MD5sum: f5b30f9b476a162a5d1b3b92becfb8ef Description: Python3 bindings to various neuroimaging data formats NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. Package: python3-pydotplus Source: python-pydotplus Version: 2.0.2-2~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 130 Depends: neurodebian-popularity-contest, graphviz, python3-pyparsing (>= 2.0.1), python3:any (>= 3.3.2-2~) Suggests: python-pydotplus-doc Homepage: http://pydotplus.readthedocs.org/ Priority: optional Section: python Filename: pool/main/p/python-pydotplus/python3-pydotplus_2.0.2-2~nd14.04+1_all.deb Size: 20474 SHA256: 557b0e8db1ac1df57386c22b1351d758a700ed8f783aa27e786e4a2419401715 SHA1: f6b548427b39a7dce36c0401e9cfe8dec184459b MD5sum: a4ecd6b7ce3510c2da1d83c6a2296efe Description: interface to Graphviz's Dot language - Python 3.x PyDotPlus is an improved version of the old pydot project that provides a Python Interface to Graphviz's Dot language. . Differences with pydot: * Compatible with PyParsing 2.0+. * Python 2.7 - Python 3 compatible. * Well documented. * CI Tested. . This package contains the Python 3.x module. Package: python3-sparqlwrapper Source: sparql-wrapper-python Version: 1.7.6-3~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 111 Depends: neurodebian-popularity-contest, python3:any (>= 3.3.2-2~), python3-rdflib Homepage: http://rdflib.github.io/sparqlwrapper/ Priority: optional Section: python Filename: pool/main/s/sparql-wrapper-python/python3-sparqlwrapper_1.7.6-3~nd14.04+1_all.deb Size: 20756 SHA256: eb86395372282db3feb488093bf428a5a3b41e4f9891ef12e34ec3cda710fb4c SHA1: be589fcf0f0f2831fdd6efbcad11ba38d2775c78 MD5sum: a5919efd227c3c93cd2bf552861ec768 Description: SPARQL endpoint interface to Python3 This is a wrapper around a SPARQL service. It helps in creating the query URI and, possibly, convert the result into a more manageable format. . This is the Python 3 version of the package. Package: python3-whoosh Source: python-whoosh Version: 2.7.4+git6-g9134ad92-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1745 Depends: neurodebian-popularity-contest, python3:any (>= 3.3.2-2~) Suggests: python-whoosh-doc Homepage: http://bitbucket.org/mchaput/whoosh/ Priority: optional Section: python Filename: pool/main/p/python-whoosh/python3-whoosh_2.7.4+git6-g9134ad92-1~nd14.04+1_all.deb Size: 290776 SHA256: cb0b3e3bfcee000cd2c7494a14c0e08af883accac44d2ec8c225017e1fba1ef0 SHA1: 3651d0392cd4fb4fc181db80b2ef54c0bda0c6be MD5sum: c759e01d992a1b55a77d6a0c4f6cd658 Description: pure-Python full-text indexing, search, and spell checking library (Python 3) Whoosh is a fast, pure-Python indexing and search library. Programmers can use it to easily add search functionality to their applications and websites. As Whoosh is pure Python, you don't have to compile or install a binary support library and/or make Python work with a JVM, yet indexing and searching is still very fast. Whoosh is designed to be modular, so every part can be extended or replaced to meet your needs exactly. . This package contains the python3 library