Package: btrbk Version: 0.26.0-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 306 Depends: neurodebian-popularity-contest, perl, btrfs-progs (>= 3.18.2) | btrfs-tools (>= 3.18.2) Recommends: openssh-client, pv Homepage: http://digint.ch/btrbk/ Priority: optional Section: utils Filename: pool/main/b/btrbk/btrbk_0.26.0-1~nd16.04+1_all.deb Size: 85914 SHA256: 6b6405a88c6d3435f72248bd835614a7e087580868f255b291fd54ee33c1c1f9 SHA1: fa5140bc04c46578fa1aba3a20440df64f4525b0 MD5sum: 0baef24a5a91e68b27dbc093a194f2a3 Description: backup tool for btrfs subvolumes Backup tool for btrfs subvolumes, using a configuration file, allows creation of backups from multiple sources to multiple destinations, with ssh and flexible retention policy support (hourly, daily, weekly, monthly). Package: datalad Version: 0.9.1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 104 Depends: neurodebian-popularity-contest, python-argcomplete, python-datalad (= 0.9.1-1~nd16.04+1), python:any Homepage: http://datalad.org Priority: optional Section: science Filename: pool/main/d/datalad/datalad_0.9.1-1~nd16.04+1_all.deb Size: 72374 SHA256: eeac105644ac6d9c94f175326d3a72e22700d63bdd98f0300c290a02087f0893 SHA1: 6a38e56a97aff81ae1fc3e34e5cbbef2a78efd43 MD5sum: d0f66484621b2fd5f5835d3d4d0bfb65 Description: data files crawler and data distribution DataLad is a data distribution providing access to a wide range of data resources already available online (initially aiming at neuroscience domain). Using git-annex as its backend for data logistics it provides following facilities . - crawling of web sites to automatically prepare and update git-annex repositories with content from online websites, S3, etc - command line interface for manipulation of collections of datasets (install, uninstall, update, publish, save, etc.) and separate files/directories (add, get), as well as search within aggregated meta-data . This package provides the command line tool. Install without Recommends if you need only core functionality. Package: fail2ban Version: 0.9.7-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1274 Depends: neurodebian-popularity-contest, python3:any (>= 3.3.2-2~), init-system-helpers (>= 1.18~), lsb-base (>= 2.0-7) Recommends: python, iptables, whois, python3-pyinotify, python3-systemd Suggests: mailx, system-log-daemon, monit Homepage: http://www.fail2ban.org Priority: optional Section: net Filename: pool/main/f/fail2ban/fail2ban_0.9.7-1~nd16.04+1_all.deb Size: 263620 SHA256: b03d502cda5aa71922761c1df64c50cd71e07b59c6aca7556718d7ec6bc1cd80 SHA1: 8d69c55f37571cb94facc41de4d5d7385c5c6729 MD5sum: 8e61ce74c577ebf7d0af2a971ca61d7c Description: ban hosts that cause multiple authentication errors Fail2ban monitors log files (e.g. /var/log/auth.log, /var/log/apache/access.log) and temporarily or persistently bans failure-prone addresses by updating existing firewall rules. Fail2ban allows easy specification of different actions to be taken such as to ban an IP using iptables or hostsdeny rules, or simply to send a notification email. . By default, it comes with filter expressions for various services (sshd, apache, qmail, proftpd, sasl etc.) but configuration can be easily extended for monitoring any other text file. All filters and actions are given in the config files, thus fail2ban can be adopted to be used with a variety of files and firewalls. Following recommends are listed: . - iptables -- default installation uses iptables for banning. You most probably need it - whois -- used by a number of *mail-whois* actions to send notification emails with whois information about attacker hosts. Unless you will use those you don't need whois - python3-pyinotify -- unless you monitor services logs via systemd, you need pyinotify for efficient monitoring for log files changes Package: fsleyes Version: 0.15.1-2~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 239480 Depends: neurodebian-popularity-contest, python-fsl, python-fsleyes-props, python-fsleyes-widgets, python-wxgtk3.0, python-six (>= 1.0~), python-jinja2, python-scipy, python-matplotlib, python-numpy, python-opengl (>= 3.1~), python-nibabel, python-pil, python-pyparsing, python:any (<< 2.8), python:any (>= 2.7.5-5~) Priority: optional Section: science Filename: pool/main/f/fsleyes/fsleyes_0.15.1-2~nd16.04+1_all.deb Size: 33200182 SHA256: 4c3e8ca647dc8f0fc28b0e143861bccdef60709a3ecf0ce91c9582f5383d4c82 SHA1: 142d9154407af64cac2affddba814d89edda29af MD5sum: 5d1da84a2444088f1bca4ea784d9fc38 Description: FSL image viewer Feature-rich viewer for volumetric (medical) images. Package: git-annex-metadata-gui Version: 0.0.0~pre1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 60 Depends: neurodebian-popularity-contest, python3-git-annex-adapter, python3-pyqt5, python3:any (>= 3.3.2-2~) Homepage: https://github.com/alpernebbi/git-annex-metadata-gui Priority: optional Section: python Filename: pool/main/g/git-annex-metadata-gui/git-annex-metadata-gui_0.0.0~pre1-1~nd16.04+1_all.deb Size: 10326 SHA256: 84eae851a9a3219b0ed7e22c062b2c05f6fd614b11748324e085f8f96b0a76ef SHA1: 8aed7cf7c1092d4fe898927457e13bdc512a9176 MD5sum: 36389572dc0866a39d5897d8d1b275d3 Description: graphical interface to the metadata functionality of git-annex Flexible graphical user interface to view and manipulate metadata of git-annex repositories. Package: git-annex-remote-rclone Version: 0.5-1~ndall+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 23 Depends: neurodebian-popularity-contest, git-annex | git-annex-standalone, rclone Homepage: https://github.com/DanielDent/git-annex-remote-rclone Priority: optional Section: utils Filename: pool/main/g/git-annex-remote-rclone/git-annex-remote-rclone_0.5-1~ndall+1_all.deb Size: 7842 SHA256: 0b1d65c740ce1073ecdae6db121d304fe02c4bb95df552326894118a65b38319 SHA1: 34a2323c4387e61c4a69617150c463f9a7b772c5 MD5sum: 00c5a0407a998eba72d4f5eb0ad71189 Description: rclone-based git annex special remote This is a wrapper around rclone to make any destination supported by rclone usable with git-annex. . Cloud storage providers supported by rclone currently include: * Google Drive * Amazon S3 * Openstack Swift / Rackspace cloud files / Memset Memstore * Dropbox * Google Cloud Storage * Microsoft One Drive * Hubic * Backblaze B2 * Yandex Disk . Note: although Amazon Cloud Drive support is implemented, it is broken ATM see https://github.com/DanielDent/git-annex-remote-rclone/issues/22 . Package: golang-github-ncw-rclone-dev Source: rclone Version: 1.36-1~ndall0 Architecture: all Maintainer: Debian Go Packaging Team Installed-Size: 1198 Depends: golang-bazil-fuse-dev, golang-github-aws-aws-sdk-go-dev, golang-github-mreiferson-go-httpclient-dev, golang-github-ncw-go-acd-dev, golang-github-ncw-swift-dev, golang-github-pkg-errors-dev, golang-github-rfjakob-eme-dev, golang-github-skratchdot-open-golang-dev, golang-github-spf13-cobra-dev, golang-github-spf13-pflag-dev, golang-github-stacktic-dropbox-dev, golang-github-stretchr-testify-dev, golang-github-tsenart-tb-dev, golang-github-unknwon-goconfig-dev, golang-github-vividcortex-ewma-dev, golang-golang-x-crypto-dev, golang-golang-x-net-dev, golang-golang-x-oauth2-google-dev, golang-golang-x-sys-dev, golang-golang-x-text-dev, golang-google-api-dev Built-Using: go-md2man (= 1.0.6+ds-1), golang-1.7 (= 1.7.4-2), golang-bazil-fuse (= 0.0~git20160811.0.371fbbd-2), golang-blackfriday (= 1.4+git20161003.40.5f33e7b-1), golang-github-aws-aws-sdk-go (= 1.1.14+dfsg-2), golang-github-davecgh-go-spew (= 1.1.0-1), golang-github-go-ini-ini (= 1.8.6-2), golang-github-google-go-querystring (= 0.0~git20151028.0.2a60fc2-1), golang-github-jmespath-go-jmespath (= 0.2.2-2), golang-github-kr-fs (= 0.0~git20131111.0.2788f0d-2), golang-github-ncw-go-acd (= 0.0~git20161119.0.7954f1f-1), golang-github-ncw-swift (= 0.0~git20160617.0.b964f2c-2), golang-github-pkg-errors (= 0.8.0-1), golang-github-pkg-sftp (= 0.0~git20160930.0.4d0e916-1), golang-github-pmezard-go-difflib (= 1.0.0-1), golang-github-rfjakob-eme (= 1.0-2), golang-github-shurcool-sanitized-anchor-name (= 0.0~git20160918.0.1dba4b3-1), golang-github-skratchdot-open-golang (= 0.0~git20160302.0.75fb7ed-2), golang-github-spf13-cobra (= 0.0~git20161229.0.1dd5ff2-1), golang-github-spf13-pflag (= 0.0~git20161024.0.5ccb023-1), golang-github-stacktic-dropbox (= 0.0~git20160424.0.58f839b-2), golang-github-tsenart-tb (= 0.0~git20151208.0.19f4c3d-2), golang-github-unknwon-goconfig (= 0.0~git20160828.0.5aa4f8c-3), golang-github-vividcortex-ewma (= 0.0~git20160822.20.c595cd8-3), golang-go.crypto (= 1:0.0~git20170407.0.55a552f+REALLY.0.0~git20161012.0.5f31782-1), golang-golang-x-net-dev (= 1:0.0+git20161013.8b4af36+dfsg-3), golang-golang-x-oauth2 (= 0.0~git20161103.0.36bc617-4), golang-golang-x-sys (= 0.0~git20161122.0.30237cf-1), golang-google-api (= 0.0~git20161128.3cc2e59-2), golang-google-cloud (= 0.5.0-2), golang-testify (= 1.1.4+ds-1), golang-x-text (= 0.0~git20161013.0.c745997-2) Homepage: https://github.com/ncw/rclone Priority: extra Section: devel Filename: pool/main/r/rclone/golang-github-ncw-rclone-dev_1.36-1~ndall0_all.deb Size: 201776 SHA256: 88274c394a26a9f8f5f4766873acde54192537112e0f0e24ddfff1b9a5361f7c SHA1: fb44d37c3df4bdf641c85720b35bbfd835870a05 MD5sum: fdc9cfc7b0a9e18cdc83ed2fbce61433 Description: go source code of rclone Rclone is a program to sync files and directories between the local file system and a variety of commercial cloud storage providers. . This package contains rclone's source code. Package: heudiconv Version: 0.4-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 170 Depends: neurodebian-popularity-contest, python, python-dcmstack, python-dicom, python-nibabel, python-numpy, python-nipype Recommends: mricron, dcm2niix, python-pytest, python-datalad Homepage: https://github.com/nipy/heudiconv Priority: optional Section: science Filename: pool/main/h/heudiconv/heudiconv_0.4-1~nd16.04+1_all.deb Size: 41348 SHA256: d46ec55125b3f4fa253ca5924ca5028e2c2c94bb1bf04840bd7761f79e1f3ee4 SHA1: ee268166253c4b8958d455cc7e2a9f0280579ae5 MD5sum: 13ef02f3ff987631b99066b1d113126e Description: DICOM converter with support for structure heuristics This is a flexible dicom converter for organizing brain imaging data into structured directory layouts. It allows for flexible directory layouts and naming schemes through customizable heuristics implementations. It only converts the necessary dicoms, not everything in a directory. It tracks the provenance of the conversion from dicom to nifti in w3c prov format. Package: nuitka Version: 0.5.28.2+ds-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3551 Depends: neurodebian-popularity-contest, gcc (>= 5.0) | g++ (>= 4.4) | clang (>= 3.0), scons (>= 2.0.0), python-appdirs | base-files (<< 7.2), python3-appdirs | base-files (<< 7.2), python-dev (>= 2.6.6-2), python:any (>= 2.7.5-5~) Recommends: python-lxml (>= 2.3), python-pyqt5, strace, chrpath Suggests: ccache Homepage: http://nuitka.net Priority: optional Section: python Filename: pool/main/n/nuitka/nuitka_0.5.28.2+ds-1~nd16.04+1_all.deb Size: 708280 SHA256: d265dff64e2cc4568069c364314a936986ec838360b756b31cc65546b87cdb04 SHA1: a16574271d8ff0007ed0f6c69be6c096f06955cd MD5sum: 7d51cd7e68d356fca0ed500606023d07 Description: Python compiler with full language support and CPython compatibility This Python compiler achieves full language compatibility and compiles Python code into compiled objects that are not second class at all. Instead they can be used in the same way as pure Python objects. Package: psychopy Version: 1.85.3.dfsg-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 15994 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python-pyglet | python-pygame, python-opengl, python-numpy, python-scipy, python-matplotlib, python-lxml, python-configobj Recommends: python-wxgtk3.0, python-wxgtk2.8, python-pyglet, python-pygame, python-openpyxl, python-opencv, python-imaging, python-serial, python-pyo, python-psutil, python-requests, python-gevent, python-msgpack, python-yaml, python-xlib, python-pandas, libxxf86vm1, ipython, python-future Suggests: python-iolabs, python-pyxid, libavbin0 Conflicts: libavbin0 (= 7-4+b1) Homepage: http://www.psychopy.org Priority: optional Section: science Filename: pool/main/p/psychopy/psychopy_1.85.3.dfsg-1~nd16.04+1_all.deb Size: 6618940 SHA256: 27c6237091516aa46f7ff786230efdd638bcdb0007a16e4139bfbb69ce7b1b7e SHA1: bb3a846e10fafc823913898101b51e7badcbff64 MD5sum: f88081f84ee6557285239f39cfd17883 Description: environment for creating psychology stimuli in Python PsychoPy provides an environment for creating psychology stimuli using Python scripting language. It combines the graphical strengths of OpenGL with easy Python syntax to give psychophysics a free and simple stimulus presentation and control package. . The goal is to provide, for the busy scientist, tools to control timing and windowing and a simple set of pre-packaged stimuli and methods. PsychoPy features . - IDE GUI for coding in a powerful scripting language (Python) - Builder GUI for rapid development of stimulation sequences - Use of hardware-accelerated graphics (OpenGL) - Integration with Spectrascan PR650 for easy monitor calibration - Simple routines for staircase and constant stimuli experimental methods as well as curve-fitting and bootstrapping - Simple (or complex) GUIs via wxPython - Easy interfaces to joysticks, mice, sound cards etc. via PyGame - Video playback (MPG, DivX, AVI, QuickTime, etc.) as stimuli Python-Version: 2.7 Package: psychtoolbox-3-common Source: psychtoolbox-3 Version: 3.0.14.20171008.dfsg1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 254246 Depends: neurodebian-popularity-contest Recommends: alsa-utils Suggests: gnuplot Homepage: http://psychtoolbox.org Priority: extra Section: science Filename: pool/main/p/psychtoolbox-3/psychtoolbox-3-common_3.0.14.20171008.dfsg1-1~nd16.04+1_all.deb Size: 24431940 SHA256: a2c4bb681d6f6c7ffbc21d07b45372ba9ae4f939fd55f561151df13aef6ff264 SHA1: a3b9f2edd409afed6c55677f2898926238bf8c7c MD5sum: d8896184b685d962385cc7e998d76607 Description: toolbox for vision research -- arch/interpreter independent part Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains architecture independent files (such as .m scripts) Package: pypy-six Source: six Version: 1.10.0-3~bpo8+1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 50 Depends: neurodebian-popularity-contest, pypy Multi-Arch: foreign Homepage: https://pythonhosted.org/six/ Priority: optional Section: python Filename: pool/main/s/six/pypy-six_1.10.0-3~bpo8+1~nd16.04+1_all.deb Size: 11734 SHA256: c6109c0e56ee0185b0c2b2048d80d4dfca1e54794fed44cdea78cdbe50421e43 SHA1: 8474dde97e39637f12c220ea65ebe06ea9b2cdc3 MD5sum: 374add4c5e6975ab260bb266f76abaaf Description: Python 2 and 3 compatibility library (PyPy interface) Six is a Python 2 and 3 compatibility library. It provides utility functions for smoothing over the differences between the Python versions with the goal of writing Python code that is compatible on both Python versions. . This package provides Six on the PyPy module path. It is complemented by python-six and python3-six. Package: python-click Version: 6.6-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 258 Depends: neurodebian-popularity-contest, python:any (<< 2.8), python:any (>= 2.7.5-5~), python-colorama Homepage: https://github.com/mitsuhiko/click Priority: optional Section: python Filename: pool/main/p/python-click/python-click_6.6-1~nd16.04+1_all.deb Size: 56088 SHA256: 8dbc2f7d83fba1a437e4994369a3cdec2731e30b4de83b946abb57a5919aa8fe SHA1: f57be90c0bd4e0725b96ad25cb2c86e437b2b156 MD5sum: 9d9ea017b2cf4674ee2df5dfe4617743 Description: Simple wrapper around optparse for powerful command line utilities - Python 2.7 Click is a Python package for creating beautiful command line interfaces in a composable way with as little code as necessary. It's the "Command Line Interface Creation Kit". It's highly configurable but comes with sensible defaults out of the box. . It aims to make the process of writing command line tools quick and fun while also preventing any frustration caused by the inability to implement an intended CLI API. . This is the Python 2 compatible package. Package: python-datalad Source: datalad Version: 0.9.1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3821 Depends: neurodebian-popularity-contest, git-annex (>= 6.20170525~) | git-annex-standalone (>= 6.20170525~), patool, python-appdirs, python-git (>= 2.1.6~), python-github, python-humanize, python-iso8601, python-keyrings.alt | python-keyring (<= 8), python-secretstorage | python-keyring (<< 9.2), python-keyring, python-mock, python-msgpack, python-pyld, python-requests, python-tqdm, python-simplejson, python-six (>= 1.8.0), python-wrapt, python-boto, python-jsmin, python-pygithub, python:any (<< 2.8), python:any (>= 2.7.5-5~) Recommends: python-html5lib, python-httpretty, python-nose, python-numpy, python-requests-ftp, python-scrapy, python-vcr, python-yaml Suggests: python-bs4 Provides: python2.7-datalad Homepage: http://datalad.org Priority: optional Section: python Filename: pool/main/d/datalad/python-datalad_0.9.1-1~nd16.04+1_all.deb Size: 743314 SHA256: a0e0b6c0b0345f118c17404c630648e8d4d045cb7fc4bcd5955ef12a2d0a058e SHA1: d3cbd6a3e5426560b4758073c2bfc474285cc875 MD5sum: ca9871a04610527be51b08c53e576527 Description: data files crawler and data distribution (Python 2) DataLad is a data distribution providing access to a wide range of data resources already available online (initially aiming at neuroscience domain). Using git-annex as its backend for data logistics it provides following facilities . - crawling of web sites to automatically prepare and update git-annex repositories with content from online websites, S3, etc - command line interface for manipulation of collections of datasets (install, uninstall, update, publish, save, etc.) and separate files/directories (add, get), as well as search within aggregated meta-data . This package installs the module for Python 2, and Recommends install all dependencies necessary for crawling, publishing, and testing. If you need base functionality, install without Recommends. Package: python-dcmstack Source: dcmstack Version: 0.6.2+git36-gc12d27d-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 506 Depends: neurodebian-popularity-contest, python-dicom (>= 0.9.7~), python-nibabel (>= 2.0~), python-numpy, python:any (<< 2.8), python:any (>= 2.7.5-5~), libjs-sphinxdoc (>= 1.0) Provides: python2.7-dcmstack Homepage: https://github.com/moloney/dcmstack Priority: optional Section: python Filename: pool/main/d/dcmstack/python-dcmstack_0.6.2+git36-gc12d27d-1~nd16.04+1_all.deb Size: 77856 SHA256: 07a61ada854ad5ef078507495b40bcf1ae6cd0b4eec6c54847865b8554f70453 SHA1: 8f37174739a525bdf76e0cafd2495a192c4e0b22 MD5sum: ab1d692626dddc8aa59cffb17dfcfc47 Description: DICOM to NIfTI conversion DICOM to NIfTI conversion with the added ability to extract and summarize meta data from the source DICOMs. The meta data can be injected into a NIfTI header extension or written out as a JSON formatted text file. . This package provides the Python package, and command line tools (dcmstack, and nitool), as well as the documentation in HTML format. Package: python-deprecation Version: 1.0.1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 34 Depends: neurodebian-popularity-contest, python:any (<< 2.8), python:any (>= 2.7.5-5~) Homepage: https://github.com/briancurtin/deprecation Priority: optional Section: python Filename: pool/main/p/python-deprecation/python-deprecation_1.0.1-1~nd16.04+1_all.deb Size: 8514 SHA256: 533809c12c01b5986512d84309b9dcfeec32aab1050c6881b7d1ee5c7c42b390 SHA1: eb558ba35152aae8a02d39eab361a38921fa1bf4 MD5sum: 9f0a1abc412cc817bfc33cfabf8b644b Description: Library to handle automated deprecations - Python 2.x Deprecation is a library that enables automated deprecations. . It offers the deprecated() decorator to wrap functions, providing proper warnings both in documentation and via Python’s warnings system, as well as the deprecation.fail_if_not_removed() decorator for test methods to ensure that deprecated code is eventually removed. . This package contains the Python 2.x module. Package: python-dipy Source: dipy Version: 0.13.0-2~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 6960 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python-numpy (>= 1:1.7.1~), python-scipy, python-h5py, python-dipy-lib (>= 0.13.0-2~nd16.04+1) Recommends: python-matplotlib, python-vtk, python-nose, python-nibabel Suggests: ipython Provides: python2.7-dipy Homepage: http://dipy.org Priority: extra Section: python Filename: pool/main/d/dipy/python-dipy_0.13.0-2~nd16.04+1_all.deb Size: 3026674 SHA256: 581761c4dc8520357d14dcb5b9998ccaec65ab786d211ab4789d1e517607b6e2 SHA1: 77526f6160b7f96b64284d6f7da07d093d4faaed MD5sum: 23f1af8841c3c996f854db8ec591a1cf Description: Python library for the analysis of diffusion MRI datasets DIPY is a software project for computational neuroanatomy. It focuses on diffusion magnetic resonance imaging (dMRI) analysis and tractography but also contains implementations of other computational imaging methods such as denoising and registration that are applicable to the greater medical imaging and image processing communities. Additionally, DIPY is an international project which brings together scientists across labs and countries to share their state-of-the-art code and expertise in the same codebase, accelerating scientific research in medical imaging. . Here are some of the highlights: - Reconstruction algorithms: CSD, DSI, GQI, DTI, DKI, QBI, SHORE and MAPMRI - Fiber tracking algorithms: deterministic and probabilistic - Native linear and nonlinear registration of images - Fast operations on streamlines (selection, resampling, registration) - Tractography segmentation and clustering - Many image operations, e.g., reslicing or denoising with NLMEANS - Estimation of distances/correspondences between streamlines and connectivity matrices - Interactive visualization of streamlines in the space of images Python-Version: 2.7 Package: python-dipy-doc Source: dipy Version: 0.13.0-2~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 14448 Depends: neurodebian-popularity-contest, libjs-jquery Suggests: python-dipy Homepage: http://dipy.org Priority: extra Section: doc Filename: pool/main/d/dipy/python-dipy-doc_0.13.0-2~nd16.04+1_all.deb Size: 10726704 SHA256: af8800e49c861eba92c6f60744040bfbb8b1d9e1c58c089cd3d04f3bcbb00b99 SHA1: ea1dee56965da6b2de9ac8378680da94a77b09e7 MD5sum: 4e9a10bda564996dc53dfde79491b7f7 Description: Python library for the analysis of diffusion MRI datasets -- documentation DIPY is a library for the analysis of diffusion magnetic resonance imaging data. . This package provides the documentation in HTML format. Package: python-fsl Source: fslpy Version: 1.2.2-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 404 Depends: neurodebian-popularity-contest, python-lxml, python-nibabel, python-six (>= 1.0~), python-indexed-gzip, python-numpy, python:any (<< 2.8), python:any (>= 2.7.5-5~) Recommends: python-wxgtk3.0 Conflicts: fsl-melview (<= 1.0.1+git9-ge661e05~dfsg.1-1) Provides: python2.7-fsl Priority: optional Section: python Filename: pool/main/f/fslpy/python-fsl_1.2.2-1~nd16.04+1_all.deb Size: 84224 SHA256: 45c2f3d1b27d91c7fc12d03723245a41ed8567d4d01db0a3db8b7f6c7b4f5823 SHA1: c736409302a26fc28b99390b9405fcfce1f2c858 MD5sum: 47dbdba99774bc867cbcb95fc8bf02e8 Description: FSL Python library Support library for FSL. . This package provides the Python 2 module. Package: python-fsleyes-props Source: fsleyes-props Version: 1.2.1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 404 Depends: neurodebian-popularity-contest, python-wxgtk3.0, python-six (>= 1.0~), python-deprecation, python-matplotlib, python-numpy, python:any (<< 2.8), python:any (>= 2.7.5-5~) Conflicts: python-props (<= 1.0~) Replaces: python-props Provides: python-props, python2.7-fsleyes-props Priority: optional Section: python Filename: pool/main/f/fsleyes-props/python-fsleyes-props_1.2.1-1~nd16.04+1_all.deb Size: 75340 SHA256: 60c61d9272cbda606fc91d8e9dbe7cc62ed407d39975530fe3d9cdbf8cbdd9d0 SHA1: 6189e0ec6f26202e21d7c95b886c39cf67990e04 MD5sum: ddef6f23fe9eed13067a8c12901651ee Description: Python descriptor framework Event programming framework with the ability for automatic CLI generation, and automatic GUI generation (with wxPython). . This package provides the Python 2 module. Package: python-fsleyes-widgets Source: fsleyes-widgets Version: 0.2.0-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 374 Depends: neurodebian-popularity-contest, python-wxgtk3.0, python-six (>= 1.0~), python-matplotlib, python-numpy, python:any (<< 2.8), python:any (>= 2.7.5-5~) Provides: python2.7-fsleyes-widgets Priority: optional Section: python Filename: pool/main/f/fsleyes-widgets/python-fsleyes-widgets_0.2.0-1~nd16.04+1_all.deb Size: 68708 SHA256: b6861141dbd7c4f57c7af1705d2b1951e8448afa4bc25da10eb21aaac09611d2 SHA1: 912f155f2ed0253fd4aa90f0b1fa23ee31826a43 MD5sum: 54856cec0a34860356e3d72d082d206f Description: Python descriptor framework A collection of GUI widgets and utilities, based on wxPython. . This package provides the Python 2 module. Package: python-git Version: 2.1.7-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1645 Depends: neurodebian-popularity-contest, git (>= 1:1.7) | git-core (>= 1:1.5.3.7), python-gitdb (>= 2), python:any (<< 2.8), python:any (>= 2.7.5-5~) Suggests: python-smmap, python-git-doc Homepage: https://github.com/gitpython-developers/GitPython Priority: optional Section: python Filename: pool/main/p/python-git/python-git_2.1.7-1~nd16.04+1_all.deb Size: 303338 SHA256: ac270ba339179c71e24455092b726f79bfecb56df7f54758c5c743749bd271be SHA1: ff4a1352521bd642a2ff7b0477167ca0bdde6263 MD5sum: 2af151ffbcfeaee29d20713f9ecdc731 Description: Python library to interact with Git repositories - Python 2.7 python-git provides object model access to a Git repository, so Python can be used to manipulate it. Repository objects can be opened or created, which can then be traversed to find parent commit(s), trees, blobs, etc. . This package provides the Python 2.7 module. Python-Version: 2.7 Package: python-git-doc Source: python-git Version: 2.1.7-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 981 Depends: neurodebian-popularity-contest, libjs-sphinxdoc (>= 1.0) Homepage: https://github.com/gitpython-developers/GitPython Priority: optional Section: doc Filename: pool/main/p/python-git/python-git-doc_2.1.7-1~nd16.04+1_all.deb Size: 126580 SHA256: 62171b3880bb0104b26d9f72e522e28d6dcf1cfa3e74146c91d6830151d4ec4b SHA1: 21592a97b6e808fe762f78ee29eb357dabffdd66 MD5sum: bc7d1b724a30ee76a59d769838e1931a Description: Python library to interact with Git repositories - docs python-git provides object model access to a Git repository, so Python can be used to manipulate it. Repository objects can be opened or created, which can then be traversed to find parent commit(s), trees, blobs, etc. . This package provides the documentation. Package: python-joblib Source: joblib Version: 0.11-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 505 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8) Recommends: python-numpy, python-pytest, python-simplejson Homepage: http://packages.python.org/joblib/ Priority: optional Section: python Filename: pool/main/j/joblib/python-joblib_0.11-1~nd16.04+1_all.deb Size: 120838 SHA256: 66601984ce39127a542baafecdaa1448914a7b1c680291ad8d4e6a98f89bb5b2 SHA1: a58abd1d74d664e7bfb83bed3e3cb55f126e51a1 MD5sum: b37dc275927ab25d22fbee938101dc1f Description: tools to provide lightweight pipelining in Python Joblib is a set of tools to provide lightweight pipelining in Python. In particular, joblib offers: . - transparent disk-caching of the output values and lazy re-evaluation (memoize pattern) - easy simple parallel computing - logging and tracing of the execution . Joblib is optimized to be fast and robust in particular on large, long-running functions and has specific optimizations for numpy arrays. . This package contains the Python 2 version. Package: python-mvpa2 Source: pymvpa2 Version: 2.6.3-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 8572 Depends: neurodebian-popularity-contest, python-numpy, python:any (<< 2.8), python:any (>= 2.7.5-5~), python-mvpa2-lib (>= 2.6.3-1~nd16.04+1) Recommends: python-h5py, python-lxml, python-matplotlib, python-mdp, python-nibabel, python-nipy, python-psutil, python-psyco, python-pywt, python-reportlab, python-scipy, python-sklearn, python-shogun, liblapack-dev, python-pprocess, python-statsmodels, python-joblib, python-duecredit, python-mock Suggests: fslview, fsl, python-mvpa2-doc, python-nose, python-openopt, python-rpy2 Provides: python2.7-mvpa2 Homepage: http://www.pymvpa.org Priority: optional Section: python Filename: pool/main/p/pymvpa2/python-mvpa2_2.6.3-1~nd16.04+1_all.deb Size: 5103282 SHA256: 1003fbb61aa119b0ccb807daa52a260230543834f0df8ad3ba60f0e179dc16ce SHA1: 69fbc69a510d3c7c462a5c38b3565583f25e5f79 MD5sum: 243f1b92633d2419bf30d6ac67884d12 Description: multivariate pattern analysis with Python v. 2 PyMVPA eases pattern classification analyses of large datasets, with an accent on neuroimaging. It provides high-level abstraction of typical processing steps (e.g. data preparation, classification, feature selection, generalization testing), a number of implementations of some popular algorithms (e.g. kNN, Ridge Regressions, Sparse Multinomial Logistic Regression), and bindings to external machine learning libraries (libsvm, shogun). . While it is not limited to neuroimaging data (e.g. fMRI, or EEG) it is eminently suited for such datasets. . This is a package of PyMVPA v.2. Previously released stable version is provided by the python-mvpa package. Python-Version: 2.7 Package: python-mvpa2-doc Source: pymvpa2 Version: 2.6.3-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 36292 Depends: neurodebian-popularity-contest, libjs-jquery, libjs-underscore Suggests: python-mvpa2, python-mvpa2-tutorialdata, ipython-notebook Homepage: http://www.pymvpa.org Priority: optional Section: doc Filename: pool/main/p/pymvpa2/python-mvpa2-doc_2.6.3-1~nd16.04+1_all.deb Size: 4649982 SHA256: 4795e334dc372a8cd5eb1966e34ee5b885e7fb546ef44077b20189d2e7d2aac7 SHA1: 1fbf3fd4722ee2e319203d4f32ab24ad6ee67220 MD5sum: 122e4ae4c0f4ed9fccb1f141b4b06567 Description: documentation and examples for PyMVPA v. 2 This is an add-on package for the PyMVPA framework. It provides a HTML documentation (tutorial, FAQ etc.), and example scripts. In addition the PyMVPA tutorial is also provided as IPython notebooks. Package: python-nibabel Source: nibabel Version: 2.2.1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 64681 Depends: neurodebian-popularity-contest, python (>= 2.7), python (<< 2.8), python-numpy, python-scipy Recommends: python-dicom, python-fuse, python-mock Suggests: python-nibabel-doc Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: python Filename: pool/main/n/nibabel/python-nibabel_2.2.1-1~nd16.04+1_all.deb Size: 2201690 SHA256: a1608d67ee19775f067ebf5a9fdcf7a216ba40d0d9a3eb95a2f3d2f898ea3301 SHA1: 2eb2cbebce71bd53ef698d8ddf11e5296804cea0 MD5sum: bb9289bbafeda77ddc8bfdb06ec95741 Description: Python bindings to various neuroimaging data formats NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. . This package also provides a commandline tools: . - dicomfs - FUSE filesystem on top of a directory with DICOMs - nib-ls - 'ls' for neuroimaging files - parrec2nii - for conversion of PAR/REC to NIfTI images Package: python-nibabel-doc Source: nibabel Version: 2.2.1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 20684 Depends: neurodebian-popularity-contest, libjs-jquery, libjs-mathjax Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: doc Filename: pool/main/n/nibabel/python-nibabel-doc_2.2.1-1~nd16.04+1_all.deb Size: 3075316 SHA256: 286c8e25dff3ae8418ce014b332939e9a89a61a8b3aae8cbec9f933986a72182 SHA1: f4afec050302973233ae2bcad3fe99d7e66fd19f MD5sum: eb94d5b43d1148fc27809c7e4ac43b27 Description: documentation for NiBabel NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. . This package provides the documentation in HTML format. Package: python-nipy Source: nipy Version: 0.4.1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3545 Depends: neurodebian-popularity-contest, python-numpy (>= 1:1.2), python (>= 2.7), python (<< 2.8), python-scipy, python-nibabel, python-nipy-lib (>= 0.4.1-1~nd16.04+1) Recommends: python-matplotlib, mayavi2, python-sympy Suggests: python-mvpa Provides: python2.7-nipy Homepage: http://neuroimaging.scipy.org Priority: extra Section: python Filename: pool/main/n/nipy/python-nipy_0.4.1-1~nd16.04+1_all.deb Size: 781470 SHA256: 33d2482335b24f2d7011e778dcd02d55fdae909063434d5ffe8083e11a70743a SHA1: 49ddb079f28d33163d83b84f438e1b6d71f59ea8 MD5sum: bc7ceb7f5fc4d49c39910264c8f217c0 Description: Analysis of structural and functional neuroimaging data NiPy is a Python-based framework for the analysis of structural and functional neuroimaging data. It provides functionality for - General linear model (GLM) statistical analysis - Combined slice time correction and motion correction - General image registration routines with flexible cost functions, optimizers and re-sampling schemes - Image segmentation - Basic visualization of results in 2D and 3D - Basic time series diagnostics - Clustering and activation pattern analysis across subjects - Reproducibility analysis for group studies Python-Version: 2.7 Package: python-nipy-doc Source: nipy Version: 0.4.1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 10732 Depends: neurodebian-popularity-contest, libjs-jquery, libjs-underscore Recommends: python-nipy Homepage: http://neuroimaging.scipy.org Priority: extra Section: doc Filename: pool/main/n/nipy/python-nipy-doc_0.4.1-1~nd16.04+1_all.deb Size: 2629682 SHA256: 3a0f0cc4036630a705f075663548767f72e30366e01df9d00525ccbe6bcbdaa2 SHA1: 59ea62c2b3928698e65bc0ba3549f235c3c8d1d7 MD5sum: 748e2f23df7737789c6552468c6c40c7 Description: documentation and examples for NiPy This package contains NiPy documentation in various formats (HTML, TXT) including * User manual * Developer guidelines * API documentation Package: python-opengl Source: pyopengl Version: 3.1.0+dfsg-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 5289 Depends: neurodebian-popularity-contest, python:any (<< 2.8), python:any (>= 2.7.5-5~), python-ctypes, libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, freeglut3 Suggests: python-tk, python-numpy, libgle3 Homepage: http://pyopengl.sourceforge.net Priority: optional Section: python Filename: pool/main/p/pyopengl/python-opengl_3.1.0+dfsg-1~nd16.04+1_all.deb Size: 502206 SHA256: c6f1c589672c7853ad0315795a69f847ff136d7f62bf0d193fd5a15700fa613c SHA1: fdb313a3f7f8856deb626df2e2a8138a19616ca2 MD5sum: 6d3d2268519ba7f557ba1fa1584dd9a0 Description: Python bindings to OpenGL (Python 2) PyOpenGL is a cross-platform open source Python binding to the standard OpenGL API providing 2D and 3D graphic drawing. PyOpenGL supports the GL, GLU, GLE, and GLUT libraries. The library can be used with the Tkinter, wxPython, FxPy, and Win32GUI windowing libraries (or almost any Python windowing library which can provide an OpenGL context). . This is the Python 2 version of the package. Package: python-pprocess Source: pprocess Version: 0.5-2~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 762 Depends: neurodebian-popularity-contest, python:any (<< 2.8), python:any (>= 2.7.5-5~) Provides: python2.7-pprocess Homepage: http://www.boddie.org.uk/python/pprocess.html Priority: optional Section: python Filename: pool/main/p/pprocess/python-pprocess_0.5-2~nd16.04+1_all.deb Size: 83788 SHA256: 259c9557b6779afe5e30bf55c78aec59c98f3ef76f69ddede48dc801ac23fb43 SHA1: 472a65ca2314d807efdb93a31efba53b32e1d01b MD5sum: 70a87e18f8de21a567685badd18d2b2d Description: elementary parallel programming for Python The pprocess module provides elementary support for parallel programming in Python using a fork-based process creation model in conjunction with a channel-based communications model implemented using socketpair and poll. On systems with multiple CPUs or multicore CPUs, processes should take advantage of as many CPUs or cores as the operating system permits. Package: python-props Source: props Version: 0.10.1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 651 Depends: neurodebian-popularity-contest, python-wxgtk3.0, python-matplotlib, python-numpy, python-six, python:any (<< 2.8), python:any (>= 2.7.5-5~) Provides: python2.7-props Priority: optional Section: python Filename: pool/main/p/props/python-props_0.10.1-1~nd16.04+1_all.deb Size: 117640 SHA256: cb58c06763b1e763bfbdd1b04229f28b1e95757eb762ba26fd58c5b32805592e SHA1: 635cd8386e5cc0ab283ae447bedfe816ee30e0ad MD5sum: 0496927a902b3f920142edcd38033201 Description: Python descriptor framework Event programming framework with the ability for automatic CLI generation, and automatic GUI generation (with wxPython). . This package provides the Python 2 module. Package: python-pydotplus Version: 2.0.2-2~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 104 Depends: neurodebian-popularity-contest, graphviz, python-pyparsing (>= 2.0.1), python:any (<< 2.8), python:any (>= 2.7.5-5~) Suggests: python-pydotplus-doc Homepage: http://pydotplus.readthedocs.org/ Priority: optional Section: python Filename: pool/main/p/python-pydotplus/python-pydotplus_2.0.2-2~nd16.04+1_all.deb Size: 20380 SHA256: 39b27d471418f9c81855a45f723d39844052c83c40a1ff1806f2f54989a74216 SHA1: 6067dfa2d60382ae0aeeb5f41423cef6de4b4e18 MD5sum: e1ff9119f7ae7fba92f3bea83f89dca1 Description: interface to Graphviz's Dot language - Python 2.7 PyDotPlus is an improved version of the old pydot project that provides a Python Interface to Graphviz's Dot language. . Differences with pydot: * Compatible with PyParsing 2.0+. * Python 2.7 - Python 3 compatible. * Well documented. * CI Tested. . This package contains the Python 2.7 module. Package: python-pydotplus-doc Source: python-pydotplus Version: 2.0.2-2~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 525 Depends: neurodebian-popularity-contest, libjs-sphinxdoc (>= 1.0), sphinx-rtd-theme-common Homepage: http://pydotplus.readthedocs.org/ Priority: optional Section: doc Filename: pool/main/p/python-pydotplus/python-pydotplus-doc_2.0.2-2~nd16.04+1_all.deb Size: 46822 SHA256: 80ee04b3206e1e638271ad5b870381128b38b12aa995c7d9237e4b38f672877b SHA1: 1680d00bc567d8e115bb693994cbad1f516aa426 MD5sum: 31848087f24154136a4c430e3106e491 Description: interface to Graphviz's Dot language - doc PyDotPlus is an improved version of the old pydot project that provides a Python Interface to Graphviz's Dot language. . Differences with pydot: * Compatible with PyParsing 2.0+. * Python 2.7 - Python 3 compatible. * Well documented. * CI Tested. . This package contains the documentation. Package: python-pyglet Source: pyglet Version: 1.3.0~rc1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 5414 Depends: neurodebian-popularity-contest, python:any (<< 2.8), python:any (>= 2.7.5-5~), python-ctypes | python (>= 2.5), libgtk2.0-0, libgl1 | libgl1-mesa-swx11, libglu1 | libglu1-mesa Recommends: libasound2 | libopenal1 Provides: python2.7-pyglet Homepage: http://www.pyglet.org Priority: optional Section: python Filename: pool/main/p/pyglet/python-pyglet_1.3.0~rc1-1~nd16.04+1_all.deb Size: 1124270 SHA256: 8255c905daf70d3107acab04cd8a7f54cec31888cedbef2e851863412908285d SHA1: b60a711b5846c46d3c0ef37a976850adafad4ac3 MD5sum: 39a0f8c4f6f30757e9192c960d5352d5 Description: cross-platform windowing and multimedia library This library provides an object-oriented programming interface for developing games and other visually-rich applications with Python. pyglet has virtually no external dependencies. For most applications and game requirements, pyglet needs nothing else besides Python, simplifying distribution and installation. It also handles multiple windows and fully aware of multi-monitor setups. . pyglet might be seen as an alternative to PyGame. Package: python-pytest-runner Source: pytest-runner Version: 2.7.1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 31 Depends: neurodebian-popularity-contest, python:any (<< 2.8), python:any (>= 2.7.5-5~) Homepage: https://github.com/pytest-dev/pytest-runner Priority: optional Section: python Filename: pool/main/p/pytest-runner/python-pytest-runner_2.7.1-1~nd16.04+1_all.deb Size: 6122 SHA256: e32cbbf3bfb304bbc9c6a901571198457ff968fe74650c9d97a25b9b969dc6a7 SHA1: 60c152dafcd3f7e359e2e038625702c9a6d370c4 MD5sum: 1e5ed45580cfbf12d31130fb71e84b67 Description: Invoke py.test as distutils command with dependency resolution Setup scripts can use pytest-runner to add setup.py test support for pytest runner. . This package contains the Python 2 module. Package: python-scikits-learn Source: scikit-learn Version: 0.19.1-2~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 94 Depends: neurodebian-popularity-contest, python-sklearn Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: oldlibs Filename: pool/main/s/scikit-learn/python-scikits-learn_0.19.1-2~nd16.04+1_all.deb Size: 85416 SHA256: 8702a485d84ed58edda5a5f4c7d6a88ea5db4cfa7d247c12e26412189bb7e56e SHA1: 2c2a1339a42b56ef7e55fad6b4bd46239925f23d MD5sum: 8a488be3948e9893ca9971b9027bcc52 Description: transitional compatibility package for scikits.learn -> sklearn migration Provides old namespace (scikits.learn) and could be removed if dependent code migrated to use sklearn for clarity of the namespace. Package: python-six Source: six Version: 1.10.0-3~bpo8+1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 53 Depends: neurodebian-popularity-contest, python:any (<< 2.8), python:any (>= 2.7.5-5~) Multi-Arch: foreign Homepage: https://pythonhosted.org/six/ Priority: optional Section: python Filename: pool/main/s/six/python-six_1.10.0-3~bpo8+1~nd16.04+1_all.deb Size: 11738 SHA256: a16ef0744fa9490e2476f1744dcf0cba5a143f14f68cb4cdb64e7749bb0bb2aa SHA1: bfe91fb94d1d1bf0e3375ec11613cac158c49b13 MD5sum: 468a2063df5cea55065b488ba520cbca Description: Python 2 and 3 compatibility library (Python 2 interface) Six is a Python 2 and 3 compatibility library. It provides utility functions for smoothing over the differences between the Python versions with the goal of writing Python code that is compatible on both Python versions. . This package provides Six on the Python 2 module path. It is complemented by python3-six and pypy-six. Package: python-sklearn Source: scikit-learn Version: 0.19.1-2~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 7020 Depends: neurodebian-popularity-contest, python:any (<< 2.8), python:any (>= 2.7.5-5~), python-numpy, python-scipy, python-sklearn-lib (>= 0.19.1-2~nd16.04+1), python-joblib (>= 0.9.2) Recommends: python-nose, python-pytest, python-matplotlib Suggests: python-dap, python-scikits-optimization, python-sklearn-doc, ipython Enhances: python-mdp, python-mvpa2 Breaks: python-scikits-learn (<< 0.9~) Replaces: python-scikits-learn (<< 0.9~) Provides: python2.7-sklearn Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: python Filename: pool/main/s/scikit-learn/python-sklearn_0.19.1-2~nd16.04+1_all.deb Size: 1456032 SHA256: dc40c5a3c168e0f9af6b4f95dc5811fa4287ce7947dd611f4efa14a94bb8c78e SHA1: d8c57356f78c3dbe09625822666c0f65128e171b MD5sum: 00e1ffe94535f53548ddef151b0136a4 Description: Python modules for machine learning and data mining scikit-learn is a collection of Python modules relevant to machine/statistical learning and data mining. Non-exhaustive list of included functionality: - Gaussian Mixture Models - Manifold learning - kNN - SVM (via LIBSVM) Package: python-sklearn-doc Source: scikit-learn Version: 0.19.1-2~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 32914 Depends: neurodebian-popularity-contest, libjs-jquery, libjs-underscore Suggests: python-sklearn Conflicts: python-scikits-learn-doc Replaces: python-scikits-learn-doc Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: doc Filename: pool/main/s/scikit-learn/python-sklearn-doc_0.19.1-2~nd16.04+1_all.deb Size: 5268546 SHA256: 3dbd67d2e12abe9d24f2c5f94c10936dec5b582cf414b64beeb29e9db1c8cf4b SHA1: 73744aeb11803ecc8819e11c5149782557ea3a68 MD5sum: bab26675c17e5ffa0e039eb649c9dd2c Description: documentation and examples for scikit-learn This package contains documentation and example scripts for python-sklearn. Package: python-sparqlwrapper Source: sparql-wrapper-python Version: 1.7.6-3~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 94 Depends: neurodebian-popularity-contest, python-rdflib, python:any (<< 2.8), python:any (>= 2.7.5-5~) Homepage: http://rdflib.github.io/sparqlwrapper/ Priority: optional Section: python Filename: pool/main/s/sparql-wrapper-python/python-sparqlwrapper_1.7.6-3~nd16.04+1_all.deb Size: 22216 SHA256: ad338cb0ae4f323328124cc0ca75e8822622784570375fe07a2fa7686a26b2b6 SHA1: ca5fdf127bd16ad4a221f1e1bcdd9b772900d65b MD5sum: d074d7f980f64501cf433356823d0482 Description: SPARQL endpoint interface to Python This is a wrapper around a SPARQL service. It helps in creating the query URI and, possibly, convert the result into a more manageable format. . This is the Python 2 version of the package. Package: python-whoosh Version: 2.7.4+git6-g9134ad92-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1745 Depends: neurodebian-popularity-contest, python:any (<< 2.8), python:any (>= 2.7.5-5~) Suggests: python-whoosh-doc Homepage: http://bitbucket.org/mchaput/whoosh/ Priority: optional Section: python Filename: pool/main/p/python-whoosh/python-whoosh_2.7.4+git6-g9134ad92-1~nd16.04+1_all.deb Size: 290732 SHA256: 92a0eff9fdbfe4291844dee3e6df991f8cadf8d7f68390e6a786313f5a3c8989 SHA1: 88ad692740ab3d4e9b9aad304fb0cd2f88e11535 MD5sum: 170a5563e901639348a65d7259b85b66 Description: pure-Python full-text indexing, search, and spell checking library (Python 2) Whoosh is a fast, pure-Python indexing and search library. Programmers can use it to easily add search functionality to their applications and websites. As Whoosh is pure Python, you don't have to compile or install a binary support library and/or make Python work with a JVM, yet indexing and searching is still very fast. Whoosh is designed to be modular, so every part can be extended or replaced to meet your needs exactly. . This package contains the python2 library Package: python-whoosh-doc Source: python-whoosh Version: 2.7.4+git6-g9134ad92-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2191 Pre-Depends: dpkg (>= 1.17.14) Depends: neurodebian-popularity-contest, libjs-sphinxdoc (>= 1.0) Replaces: python-whoosh (<< 2.1.0) Homepage: http://bitbucket.org/mchaput/whoosh/ Priority: extra Section: doc Filename: pool/main/p/python-whoosh/python-whoosh-doc_2.7.4+git6-g9134ad92-1~nd16.04+1_all.deb Size: 241712 SHA256: 12cb58145bf1ba52365ea308a7b0bb46a8af3daec44854cd63d9b711a33fbe7b SHA1: 59ddf9d1da701463188f7758ae1fd38ffcad4181 MD5sum: 885d8520f29c0118144c74e090dfd792 Description: full-text indexing, search, and spell checking library (doc) Whoosh is a fast, pure-Python indexing and search library. Programmers can use it to easily add search functionality to their applications and websites. As Whoosh is pure Python, you don't have to compile or install a binary support library and/or make Python work with a JVM, yet indexing and searching is still very fast. Whoosh is designed to be modular, so every part can be extended or replaced to meet your needs exactly. . This package contains the library documentation for python-whoosh. Package: python-wrapt-doc Source: python-wrapt Version: 1.9.0-4~nd0~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 439 Depends: neurodebian-popularity-contest, libjs-sphinxdoc (>= 1.0), sphinx-rtd-theme-common Homepage: https://github.com/GrahamDumpleton/wrapt Priority: optional Section: doc Filename: pool/main/p/python-wrapt/python-wrapt-doc_1.9.0-4~nd0~nd16.04+1_all.deb Size: 51402 SHA256: e707a7be420ef988e9faecf26c18534cf3d9e7a38ac0aea5a4553e47868045aa SHA1: ff328304d41bd1a2e74ca45a5ff9ff8c0f5a3d20 MD5sum: 6db6b288710374dc0d4ed655d4d3ff11 Description: decorators, wrappers and monkey patching. - doc The aim of the wrapt module is to provide a transparent object proxy for Python, which can be used as the basis for the construction of function wrappers and decorator functions. . The wrapt module focuses very much on correctness. It therefore goes way beyond existing mechanisms such as functools.wraps() to ensure that decorators preserve introspectability, signatures, type checking abilities etc. The decorators that can be constructed using this module will work in far more scenarios than typical decorators and provide more predictable and consistent behaviour. . To ensure that the overhead is as minimal as possible, a C extension module is used for performance critical components. An automatic fallback to a pure Python implementation is also provided where a target system does not have a compiler to allow the C extension to be compiled. . This package contains the documentation. Package: python3-click Source: python-click Version: 6.6-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 258 Depends: neurodebian-popularity-contest, python3:any (>= 3.3.2-2~), python3-colorama Homepage: https://github.com/mitsuhiko/click Priority: optional Section: python Filename: pool/main/p/python-click/python3-click_6.6-1~nd16.04+1_all.deb Size: 56188 SHA256: cab0774b5e1413895b98a43ddb9aae5501b7d16cdbd4920e32364e920e6ce317 SHA1: 6ce3f2b88b4cdaeb7215da4bc6bdf6a6c44310c4 MD5sum: b10ccf20cad45fd576a95f98d438079f Description: Simple wrapper around optparse for powerful command line utilities - Python 3.x Click is a Python package for creating beautiful command line interfaces in a composable way with as little code as necessary. It's the "Command Line Interface Creation Kit". It's highly configurable but comes with sensible defaults out of the box. . It aims to make the process of writing command line tools quick and fun while also preventing any frustration caused by the inability to implement an intended CLI API. . This is the Python 3 compatible package. Package: python3-deprecation Source: python-deprecation Version: 1.0.1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 34 Depends: neurodebian-popularity-contest, python3:any (>= 3.4~) Homepage: https://github.com/briancurtin/deprecation Priority: optional Section: python Filename: pool/main/p/python-deprecation/python3-deprecation_1.0.1-1~nd16.04+1_all.deb Size: 8596 SHA256: 7c4ce0e2a898f02430b72da190b1a1f2e974ee85d02e47e0d623dffb2c4a957e SHA1: aac1d0abc0b0d6efec934783cf40a591ab5a3678 MD5sum: 9ce1d906c604b7f6969d2faa5f47f07e Description: Library to handle automated deprecations - Python 3.x Deprecation is a library that enables automated deprecations. . It offers the deprecated() decorator to wrap functions, providing proper warnings both in documentation and via Python’s warnings system, as well as the deprecation.fail_if_not_removed() decorator for test methods to ensure that deprecated code is eventually removed. . This package contains the Python 3.x module. Package: python3-fsl Source: fslpy Version: 1.2.2-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 404 Depends: neurodebian-popularity-contest, python3-lxml, python3-nibabel, python3-six (>= 1.0~), python3-indexed-gzip, python3-numpy, python3:any (>= 3.3.2-2~) Priority: optional Section: python Filename: pool/main/f/fslpy/python3-fsl_1.2.2-1~nd16.04+1_all.deb Size: 84240 SHA256: a7167205a5ca6eb8874f5e6ed7bcb713825e2d06beabf56708a89b4d61a6f9b4 SHA1: 271459c9da5ee1eb42e54bce3b7cc7d8289dd60f MD5sum: 0a70d9bdde20e949509218a421c56118 Description: FSL Python library Support library for FSL. . This package provides the Python 3 module. Package: python3-git Source: python-git Version: 2.1.7-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1642 Depends: neurodebian-popularity-contest, git (>= 1:1.7) | git-core (>= 1:1.5.3.7), python3-gitdb (>= 2), python3:any (>= 3.3.2-2~) Suggests: python-git-doc Homepage: https://github.com/gitpython-developers/GitPython Priority: optional Section: python Filename: pool/main/p/python-git/python3-git_2.1.7-1~nd16.04+1_all.deb Size: 303072 SHA256: fb7761499165aa43b55da1419033ffec100357a6dce08fa11b9c94f80b7c9b55 SHA1: 74781c39676dc55cb7580c6c0a15edb7f57a4aea MD5sum: b4913331c8f941321fab931bb395ea5e Description: Python library to interact with Git repositories - Python 3.x python-git provides object model access to a Git repository, so Python can be used to manipulate it. Repository objects can be opened or created, which can then be traversed to find parent commit(s), trees, blobs, etc. . This package provides the Python 3.x module. Package: python3-git-annex-adapter Source: git-annex-adapter Version: 0.0.0~pre1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 33 Depends: neurodebian-popularity-contest, git-annex (>= 6.20160726~) | git-annex-standalone (>= 6.20160726~), python3:any (>= 3.3.2-2~) Homepage: https://github.com/alpernebbi/git-annex-adapter Priority: optional Section: python Filename: pool/main/g/git-annex-adapter/python3-git-annex-adapter_0.0.0~pre1-1~nd16.04+1_all.deb Size: 6812 SHA256: 1e263dca528e4bc3acc21ff5dbc30e5a42e8dad2c24cd6367c6005a02ff2f51f SHA1: cdb7531fe99462f3ee622889e496f7ef3088f98f MD5sum: 00c952ca16a9f427762477c0fde1eab4 Description: call git-annex commands from within Python This is a minimalistic interface to git-annex. Commands are executed using subprocess and use their batch versions whenever possible. Package: python3-joblib Source: joblib Version: 0.11-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 500 Depends: neurodebian-popularity-contest, python3:any (>= 3.3.2-2~) Recommends: python3-numpy, python3-pytest, python3-simplejson Homepage: http://packages.python.org/joblib/ Priority: optional Section: python Filename: pool/main/j/joblib/python3-joblib_0.11-1~nd16.04+1_all.deb Size: 118060 SHA256: 708bd9a67011bc7470067ad8bdfe542e461b0a46ddaaeb4f97a964639b30caa7 SHA1: 3cd91b8694c39edf2909400bc801d35a0fa4c146 MD5sum: fab71d0c35313fdb3d5743ba7c1782d2 Description: tools to provide lightweight pipelining in Python Joblib is a set of tools to provide lightweight pipelining in Python. In particular, joblib offers: . - transparent disk-caching of the output values and lazy re-evaluation (memoize pattern) - easy simple parallel computing - logging and tracing of the execution . Joblib is optimized to be fast and robust in particular on large, long-running functions and has specific optimizations for numpy arrays. . This package contains the Python 3 version. Package: python3-nibabel Source: nibabel Version: 2.2.1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 64653 Depends: neurodebian-popularity-contest, python3-numpy, python3-scipy Suggests: python-nibabel-doc, python3-dicom, python3-fuse, python3-mock Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: python Filename: pool/main/n/nibabel/python3-nibabel_2.2.1-1~nd16.04+1_all.deb Size: 2194138 SHA256: d8c7c766239ec689b914d3acf2806fbddde125e00c2ec8eb0c62f6881bcfd660 SHA1: 76ce01d5087216534918754e719187668631a3f7 MD5sum: 2e03377eced7389885c7198080236764 Description: Python3 bindings to various neuroimaging data formats NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. Package: python3-opengl Source: pyopengl Version: 3.1.0+dfsg-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 5289 Depends: neurodebian-popularity-contest, python3:any (>= 3.3.2-2~), libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, freeglut3 Suggests: python3-tk, python3-numpy, libgle3 Homepage: http://pyopengl.sourceforge.net Priority: optional Section: python Filename: pool/main/p/pyopengl/python3-opengl_3.1.0+dfsg-1~nd16.04+1_all.deb Size: 502442 SHA256: 70d36f1d4930e6b529dc5e338a93b80c397b5c2e18702b7aaeb652473865c9c3 SHA1: 04fcb1dfc2af7e36e299d3367512cea231f9ab32 MD5sum: 152c0535f97dee9f6fac13ab6ff1487d Description: Python bindings to OpenGL (Python 3) PyOpenGL is a cross-platform open source Python binding to the standard OpenGL API providing 2D and 3D graphic drawing. PyOpenGL supports the GL, GLU, GLE, and GLUT libraries. The library can be used with the Tkinter, wxPython, FxPy, and Win32GUI windowing libraries (or almost any Python windowing library which can provide an OpenGL context). . This is the Python 3 version of the package. Package: python3-pydotplus Source: python-pydotplus Version: 2.0.2-2~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 104 Depends: neurodebian-popularity-contest, graphviz, python3-pyparsing (>= 2.0.1), python3:any (>= 3.3.2-2~) Suggests: python-pydotplus-doc Homepage: http://pydotplus.readthedocs.org/ Priority: optional Section: python Filename: pool/main/p/python-pydotplus/python3-pydotplus_2.0.2-2~nd16.04+1_all.deb Size: 20456 SHA256: 42d5c7c970226e81b0f17ae4652ff648d7383cf9e8808de91edf38e7cf2757fb SHA1: ab2277f582dc53d8671d48f1a223e9c5b5e58912 MD5sum: 641530aaadacf9937216ef63e4f45625 Description: interface to Graphviz's Dot language - Python 3.x PyDotPlus is an improved version of the old pydot project that provides a Python Interface to Graphviz's Dot language. . Differences with pydot: * Compatible with PyParsing 2.0+. * Python 2.7 - Python 3 compatible. * Well documented. * CI Tested. . This package contains the Python 3.x module. Package: python3-pytest-runner Source: pytest-runner Version: 2.7.1-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 28 Depends: neurodebian-popularity-contest, python3:any (>= 3.3.2-2~) Homepage: https://github.com/pytest-dev/pytest-runner Priority: optional Section: python Filename: pool/main/p/pytest-runner/python3-pytest-runner_2.7.1-1~nd16.04+1_all.deb Size: 6138 SHA256: c0d765fdbc263503b35ddaf7b5542aa5d96478d9454452d5562da8153342fc98 SHA1: f336e89023459de8693b4a12cfb7203559adc7c0 MD5sum: 761f7237281476ff3a8c53174cec36dd Description: Invoke py.test as distutils command with dependency resolution Setup scripts can use pytest-runner to add setup.py test support for pytest runner. . This package contains the Python 3 module. Package: python3-six Source: six Version: 1.10.0-3~bpo8+1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 53 Depends: neurodebian-popularity-contest, python3:any (>= 3.4~) Multi-Arch: foreign Homepage: https://pythonhosted.org/six/ Priority: optional Section: python Filename: pool/main/s/six/python3-six_1.10.0-3~bpo8+1~nd16.04+1_all.deb Size: 11806 SHA256: da2c97c0ec6c668ab58dca583dc734673a2080d8ab71f6332b39bb4158ea31bd SHA1: e37946ce2c3203629370872514a485b92009df80 MD5sum: 1eecca62d1b45557f19e4e7ca8ceb295 Description: Python 2 and 3 compatibility library (Python 3 interface) Six is a Python 2 and 3 compatibility library. It provides utility functions for smoothing over the differences between the Python versions with the goal of writing Python code that is compatible on both Python versions. . This package provides Six on the Python 3 module path. It is complemented by python-six and pypy-six. Package: python3-sklearn Source: scikit-learn Version: 0.19.1-2~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 7019 Depends: neurodebian-popularity-contest, python3:any (>= 3.3.2-2~), python3-numpy, python3-scipy, python3-sklearn-lib (>= 0.19.1-2~nd16.04+1), python3-joblib (>= 0.9.2) Recommends: python3-nose, python-pytest, python3-matplotlib Suggests: python3-dap, python-sklearn-doc, ipython3 Enhances: python3-mdp, python3-mvpa2 Homepage: http://scikit-learn.sourceforge.net Priority: optional Section: python Filename: pool/main/s/scikit-learn/python3-sklearn_0.19.1-2~nd16.04+1_all.deb Size: 1455744 SHA256: f3dcd0cfa3712cea9b542dae5cc0d95abb88cc57bd7ec67e0843c84c826082b5 SHA1: 645f0565c9ffdfb615043f3b0b3f5679861a69ef MD5sum: b3a96c3a704086ecf9d1618784901db1 Description: Python modules for machine learning and data mining scikit-learn is a collection of Python modules relevant to machine/statistical learning and data mining. Non-exhaustive list of included functionality: - Gaussian Mixture Models - Manifold learning - kNN - SVM (via LIBSVM) . This package contains the Python 3 version. Package: python3-sparqlwrapper Source: sparql-wrapper-python Version: 1.7.6-3~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 86 Depends: neurodebian-popularity-contest, python3-rdflib, python3:any (>= 3.3.2-2~) Homepage: http://rdflib.github.io/sparqlwrapper/ Priority: optional Section: python Filename: pool/main/s/sparql-wrapper-python/python3-sparqlwrapper_1.7.6-3~nd16.04+1_all.deb Size: 20736 SHA256: 00f1f4dccddb10c7dc20864c2c1f3d1dd5d28e4f8a6688d64d0369c660546a81 SHA1: 7cee8efdc2c8913ab01e21b747340d64bc510998 MD5sum: 7fccb9cc5ce739fda709fe4a13a62dbb Description: SPARQL endpoint interface to Python3 This is a wrapper around a SPARQL service. It helps in creating the query URI and, possibly, convert the result into a more manageable format. . This is the Python 3 version of the package. Package: python3-whoosh Source: python-whoosh Version: 2.7.4+git6-g9134ad92-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1745 Depends: neurodebian-popularity-contest, python3:any (>= 3.3.2-2~) Suggests: python-whoosh-doc Homepage: http://bitbucket.org/mchaput/whoosh/ Priority: optional Section: python Filename: pool/main/p/python-whoosh/python3-whoosh_2.7.4+git6-g9134ad92-1~nd16.04+1_all.deb Size: 290836 SHA256: cc05e669b1140db18ec728f1d3660733d90e5169fe036d0a383b7b2e9dfbb844 SHA1: 64faab26c358bac01ecf9851b4106ec0b8fbf220 MD5sum: 3656d0b3d443816dd647213af474dd04 Description: pure-Python full-text indexing, search, and spell checking library (Python 3) Whoosh is a fast, pure-Python indexing and search library. Programmers can use it to easily add search functionality to their applications and websites. As Whoosh is pure Python, you don't have to compile or install a binary support library and/or make Python work with a JVM, yet indexing and searching is still very fast. Whoosh is designed to be modular, so every part can be extended or replaced to meet your needs exactly. . This package contains the python3 library