Package: fsl Version: 5.0.9-4~nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 39 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.9-4~nd90+1_all.deb Size: 21602 SHA256: 45df8404896ea9fbdfca86d21559b7b7a023af57d6d880ebd69b54954d8173a7 SHA1: faee3ec6515e393d07a433cb033d125889a349fc MD5sum: 0635cca54b4ce970f0656f4e2683c8de Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.9-4~nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 35 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.9-4~nd90+1_all.deb Size: 20192 SHA256: ac5c208238a641d9e9aeadcfad1996a63671b762214e8edb339f15d481ee0b1e SHA1: b46651732710d26cbc47ed9c719d4cf261fe2e20 MD5sum: d3334a9221dd33ab89ed33441a6f46ab Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-core Source: fsl Version: 5.0.9-4~nd90+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 38793 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk, tcl, bc, dc, python, libjs-excanvas, libc6 (>= 2.14), libexpat1 (>= 2.0.1), libgcc1 (>= 1:3.0), libgd3 (>= 2.1.0~alpha~), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libnewmat10ldbl, libnifti2, libpng16-16 (>= 1.6.2-1), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Recommends: fsl-atlases, fsl-5.0-eddy-nonfree, fslview Suggests: fsl-feeds, fsl-5.0-gpu, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.9-4~nd90+1_amd64.deb Size: 8177230 SHA256: 519de1a8537d039ef581b6690f9431b4e03934eaa8d8daac0c46a729f6c9b017 SHA1: c3ca03b57ee4a214a333e052480e7d5c052296ee MD5sum: 0739e238dd1e69eb0d517cc13e34655d Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. 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fcdda92712a9c023e32446848a8dc3f00c4e0775 fed43d7d06d517007c2d9ad5c4dcbd11d8523c22 Package: fsl-5.0-eddy-nonfree Source: fsl-eddy-nonfree Version: 5.0.9-1~nd90+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 813 Depends: neurodebian-popularity-contest, fsl-5.0-core (>= 5.0.9-1~), libc6 (>= 2.14), libgcc1 (>= 1:3.0), libnewmat10ldbl, libstdc++6 (>= 5.2) Conflicts: fsl-5.0-core (<< 5.0.9) Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl-eddy-nonfree/fsl-5.0-eddy-nonfree_5.0.9-1~nd90+1_amd64.deb Size: 272104 SHA256: 24c9e31084c0fa99f1e53c623afc5de383f049c1b01319763153c7bf9252aed8 SHA1: 04dd9a3600b2817b071ecf9e33f5223cb4e9cbe5 MD5sum: 8939f399b2cdac666fe0464bbb0a765a Description: correcting eddy currents and movements in diffusion data This package provide the 'eddy' component of the FSL MRI data analysis suite. Since FSL 5.0.9 eddy is no longer included in the main fsl package, because its sources are no longer publicly available. Package: fsl-5.0-eddy-nonfree-dbgsym Source: fsl-eddy-nonfree Version: 5.0.9-1~nd90+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 3172 Depends: fsl-5.0-eddy-nonfree (= 5.0.9-1~nd90+1) Priority: extra Section: non-free/debug Filename: pool/non-free/f/fsl-eddy-nonfree/fsl-5.0-eddy-nonfree-dbgsym_5.0.9-1~nd90+1_amd64.deb Size: 3076500 SHA256: 3046ba673aa6cfa6c74767fae98d3bdf2687f14b210cef9f4921f09452f8fb55 SHA1: 2cfd77a1e552ae12fd92f01b7ddd769bca837c7b MD5sum: 9a9c4614854535c701a1e9c91a1998fe Description: Debug symbols for fsl-5.0-eddy-nonfree Auto-Built-Package: debug-symbols Build-Ids: ddc212d4e6ac8a34c617e666f16ecd3fb532135d Package: fsl-core Source: fsl Version: 5.0.9-4~nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 43 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.9-4~nd90+1_all.deb Size: 21384 SHA256: 95f5d2a2e1de6e33c39798b80f7bf7d706e896c71132df987c0b070f9df5f1ba SHA1: bc7a5bbcca7314cd464f6fedb3032ed12d4724b0 MD5sum: 1c7527198eacd847077548d16be99fd6 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.14.20180526-1~ndall+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 19 Depends: matlab-psychtoolbox-3-nonfree (= 3.0.14.20180526-1~ndall+1), psychtoolbox-3-common (>= 3.0.14.20180526-1~ndall+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.14.20180526-1~ndall+1_all.deb Size: 4378 SHA256: cf22d70931c54a0de0cdece069ba16cec0fcbe36c679c33e59fc62c05b5c455b SHA1: d7f8188436280d038ffb0d0127ad6d9b6602b1e7 MD5sum: 195a48414c4f537b10b983cad7c962be Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.14.20180526-1~ndall+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 5173 Depends: psychtoolbox-3-lib (>= 3.0.14.20180526-1~ndall+1.dfsg), psychtoolbox-3-common (>= 3.0.14.20180526-1~ndall+1.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libopenal1, libpciaccess0, libusb-1.0-0 (>= 2:1.0.9~), libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.14.20180526-1~ndall+1_amd64.deb Size: 1668418 SHA256: 4157c8080afae28df65fa816248f74b88ddf14a8f5d6af59bf481dc984fd1947 SHA1: bf1cc293ecbf02a9d6c0a38ee257c4610c040963 MD5sum: cce6be301f0e894b1541d1ea65d80f4d Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. 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Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.14.20180526-1~ndall+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 1783 Depends: octave-psychtoolbox-3 (>= 3.0.14.20180526-1~ndall+1.dfsg), psychtoolbox-3-common (>= 3.0.14.20180526-1~ndall+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.14.20180526-1~ndall+1_amd64.deb Size: 587394 SHA256: 4fb195ed534cbfe1187d199edc64c7dcff40854f9049d63911d835de57a68439 SHA1: 7f0b01b8c2296ebdc724a70e30cc9ae89e126e3f MD5sum: 5a6f1b04e3679375e8e34bcbb03c2ee0 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: python-fsl Source: fslpy Version: 0.10.0-1~nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 457 Depends: neurodebian-popularity-contest, python-lxml, python-nibabel, cython, python-indexed-gzip, python-matplotlib, python-numpy, python-six (>= 1.10.0), python-sphinx, python-sphinx-rtd-theme, python:any (<< 2.8), python:any (>= 2.7.5-5~) Recommends: python-wxgtk3.0 Conflicts: fsl-melview (<= 1.0.1+git9-ge661e05~dfsg.1-1) Provides: python2.7-fsl Priority: optional Section: non-free/python Filename: pool/non-free/f/fslpy/python-fsl_0.10.0-1~nd90+1_all.deb Size: 94764 SHA256: 5c444727b8046a48882110ab9ea1f152142780d260a3cbe369f6d4d152796337 SHA1: e2bb741eb046d059e547fff1e1f3d7e1e1d63bc6 MD5sum: af282064468736c28feefd8bdeadb451 Description: FSL Python library Support library for FSL. . This package provides the Python 2 module. Package: python-props Source: props Version: 0.9.14-1~nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 650 Depends: neurodebian-popularity-contest, python-wxgtk3.0, python-matplotlib, python-numpy, python-six, python-sphinx, python-sphinx-rtd-theme, python:any (<< 2.8), python:any (>= 2.7.5-5~) Provides: python2.7-props Priority: optional Section: non-free/python Filename: pool/non-free/p/props/python-props_0.9.14-1~nd90+1_all.deb Size: 117932 SHA256: e193bbe46bc55e6e2386179e2a549cb6759740c81d46323964559ae7f125d694 SHA1: 30c69bdcbf04031309d785c9cf765721570c38c8 MD5sum: 20146c501c144c4f7d2ae39ab16ddd18 Description: Python descriptor framework Event programming framework with the ability for automatic CLI generation, and automatic GUI generation (with wxPython). . This package provides the Python 2 module. Package: python3-fsl Source: fslpy Version: 0.10.0-1~nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 454 Depends: neurodebian-popularity-contest, python3-lxml, python3-nibabel, cython3, python3-indexed-gzip, python3-matplotlib, python3-numpy, python3-six (>= 1.10.0), python3-sphinx, python3-sphinx-rtd-theme, python3:any (>= 3.3.2-2~) Priority: optional Section: non-free/python Filename: pool/non-free/f/fslpy/python3-fsl_0.10.0-1~nd90+1_all.deb Size: 94534 SHA256: 2385a49024d82c94456092d48cb8ba5be0ea3f4e1cc3249f742e490ab04331c7 SHA1: 61a167c8d622a0220f8b2ffff84a3bf0f2e6b44e MD5sum: c269f9fe8221e8f3a87c384a16553b5e Description: FSL Python library Support library for FSL. . This package provides the Python 3 module. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd70+1+nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3036 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd70+1+nd90+1_all.deb Size: 1771694 SHA256: 651f753605211b134717b49f292f96ad99739203a00bd496d8fb57b0641d3c08 SHA1: a803a50e31872d88aa7b592b8b3ac74073c5cd39 MD5sum: 801ba2e094ef196dc82cad2d02a214eb Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.