Package: fsl Version: 5.0.9-4~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 39 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.9-4~nd16.04+1_all.deb Size: 21576 SHA256: 5435edabad39ff77b4f7dc162920b0c21ee552d06d99a3cd3919923a4ee73ac8 SHA1: a6a1e450b321b443a2a2889e85d965ce9ff09381 MD5sum: 4c0d19b9e521c126f19593da9f7e41d6 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.9-4~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 35 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.9-4~nd16.04+1_all.deb Size: 20226 SHA256: 2c6d50b79517880398ef42fad25e84086d220faace9ec6ab78defce7f96921a0 SHA1: f8138027ebef4f09d6ebf4ee7c8dcc4538310b1a MD5sum: d7da3fa997160c28dcedaae5ac3e8ce4 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-core Source: fsl Version: 5.0.9-4~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 43 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.9-4~nd16.04+1_all.deb Size: 21428 SHA256: 0d5eea724705ea51d7c504b4c3b733052a7b50f13dee256fb01aa8e4aa4177f7 SHA1: f23d7113adfe563679ee9fb847c0065dfb3252ba MD5sum: 612685de9dcd7c7d12927fd29ca8a03d Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.14.20180526-1~ndall+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 19 Depends: matlab-psychtoolbox-3-nonfree (= 3.0.14.20180526-1~ndall+1), psychtoolbox-3-common (>= 3.0.14.20180526-1~ndall+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.14.20180526-1~ndall+1_all.deb Size: 4378 SHA256: cf22d70931c54a0de0cdece069ba16cec0fcbe36c679c33e59fc62c05b5c455b SHA1: d7f8188436280d038ffb0d0127ad6d9b6602b1e7 MD5sum: 195a48414c4f537b10b983cad7c962be Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: python-fsl Source: fslpy Version: 0.10.0-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 457 Depends: neurodebian-popularity-contest, python-lxml, python-nibabel, cython, python-indexed-gzip, python-matplotlib, python-numpy, python-six (>= 1.10.0), python-sphinx, python-sphinx-rtd-theme, python:any (<< 2.8), python:any (>= 2.7.5-5~) Recommends: python-wxgtk3.0 Conflicts: fsl-melview (<= 1.0.1+git9-ge661e05~dfsg.1-1) Provides: python2.7-fsl Priority: optional Section: non-free/python Filename: pool/non-free/f/fslpy/python-fsl_0.10.0-1~nd16.04+1_all.deb Size: 94870 SHA256: 76d8a8cd4c04ccd82859397eec10b98bff10aa39c9342448ae72e46e8b96e173 SHA1: 47d484f9c3e650841537b7d5659ff4ef6ab2229a MD5sum: ea5db012cf0b9a13a2b6760a1f748542 Description: FSL Python library Support library for FSL. . This package provides the Python 2 module. Package: python-props Source: props Version: 0.9.14-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 650 Depends: neurodebian-popularity-contest, python-wxgtk3.0, python-matplotlib, python-numpy, python-six, python-sphinx, python-sphinx-rtd-theme, python:any (<< 2.8), python:any (>= 2.7.5-5~) Provides: python2.7-props Priority: optional Section: non-free/python Filename: pool/non-free/p/props/python-props_0.9.14-1~nd16.04+1_all.deb Size: 118262 SHA256: 4ff4329bacb2c91892197fcbe46dd118667828d4aa92c6b3d830c11519147782 SHA1: 717abb1bb555c2fca77552f7fcd56318f1ad050a MD5sum: b3c461312c38f5b346c207bd0669fea3 Description: Python descriptor framework Event programming framework with the ability for automatic CLI generation, and automatic GUI generation (with wxPython). . This package provides the Python 2 module. Package: python3-fsl Source: fslpy Version: 0.10.0-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 454 Depends: neurodebian-popularity-contest, python3-lxml, python3-nibabel, cython3, python3-indexed-gzip, python3-matplotlib, python3-numpy, python3-six (>= 1.10.0), python3-sphinx, python3-sphinx-rtd-theme, python3:any (>= 3.3.2-2~) Priority: optional Section: non-free/python Filename: pool/non-free/f/fslpy/python3-fsl_0.10.0-1~nd16.04+1_all.deb Size: 94616 SHA256: ed1b3d9932a52f1f32ff986a493cdcd38385e50d836d341d78534040fa952ae7 SHA1: 7e00ead7a8ddf0bf5cba55f3a3fdff8f459f848c MD5sum: 81a6496b58e9302e1af4120c71755119 Description: FSL Python library Support library for FSL. . This package provides the Python 3 module. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd+1+nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3036 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd+1+nd16.04+1_all.deb Size: 1771398 SHA256: 42ce1ae866a5e9b4d0564629b0c07cfe4ab85ecd7dbde7dd2e4d6779383d1541 SHA1: 2966fb73e4b00f10da6e23e344c5eadc3bd875d6 MD5sum: 93f47649bd0924f87b17227a8f8edf60 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.