Package: fsl Version: 5.0.9-4~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 55 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.9-4~nd70+1_all.deb Size: 22956 SHA256: afea90462d6177dedbc3cf84ecbd772bf7e2226d6ccbb4e584136d4acc190985 SHA1: 1273fef8fa43699b6f357eba4c677f3ff7fcfd90 MD5sum: 781333a0f054b88884d798e4e74b8b42 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.9-4~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 52 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.9-4~nd70+1_all.deb Size: 21410 SHA256: 011f01c93f64d67ff45b547ed5df7c42cd5faa6895b245156e07dc829db27bbc SHA1: ed8d776e31a1c65df180593826982f11982485a9 MD5sum: fed4466fef16f36a9899c0cb5569b879 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-core Source: fsl Version: 5.0.9-4~nd70+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 37822 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk, tcl, bc, dc, python, libjs-excanvas, libc6 (>= 2.11), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.1.1), libgd2-xpm (>= 2.0.36~rc1~dfsg), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4) Recommends: fsl-atlases, fsl-5.0-eddy-nonfree, fslview Suggests: fsl-feeds, fsl-5.0-gpu, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.9-4~nd70+1_amd64.deb Size: 14459934 SHA256: 71ee6a0817b1f4325648c434984ed4d830c57e56d8c7db800c67fefb585e5bc8 SHA1: eb82fda63b6b8cd3c91c255b54bbc943ef51ff15 MD5sum: 32bdd8a103aa9e6292877911575dc8ee Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-eddy-nonfree Source: fsl-eddy-nonfree Version: 5.0.9-1~nd70+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 810 Depends: neurodebian-popularity-contest, fsl-5.0-core (>= 5.0.9-1~), libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libnewmat10ldbl, libstdc++6 (>= 4.4.0) Conflicts: fsl-5.0-core (<< 5.0.9) Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl-eddy-nonfree/fsl-5.0-eddy-nonfree_5.0.9-1~nd70+1_amd64.deb Size: 326110 SHA256: ff0ca4779e34bf2ee74f25150c2ec735b0eec803f12137840b8ec8718fc2068f SHA1: 5d9f2ff5c7088dce93a5447d4f6dfae2fe1dcbb3 MD5sum: 0a80f8d694fd071782d4d95003be2896 Description: correcting eddy currents and movements in diffusion data This package provide the 'eddy' component of the FSL MRI data analysis suite. Since FSL 5.0.9 eddy is no longer included in the main fsl package, because its sources are no longer publicly available. Package: fsl-core Source: fsl Version: 5.0.9-4~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 70 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.9-4~nd70+1_all.deb Size: 22650 SHA256: fcc4cad7e66912b39079326f657eb36b606d1d5e7ef35e9bbe23e72606cc8417 SHA1: 85158ffc583cbc5de6e173a5c5f217872198c175 MD5sum: 2cd4d7f05424d5d98f90abbadda73dda Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.14.20180526-1~ndall+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 19 Depends: matlab-psychtoolbox-3-nonfree (= 3.0.14.20180526-1~ndall+1), psychtoolbox-3-common (>= 3.0.14.20180526-1~ndall+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.14.20180526-1~ndall+1_all.deb Size: 4378 SHA256: cf22d70931c54a0de0cdece069ba16cec0fcbe36c679c33e59fc62c05b5c455b SHA1: d7f8188436280d038ffb0d0127ad6d9b6602b1e7 MD5sum: 195a48414c4f537b10b983cad7c962be Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.14.20180526-1~ndall+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 5173 Depends: psychtoolbox-3-lib (>= 3.0.14.20180526-1~ndall+1.dfsg), psychtoolbox-3-common (>= 3.0.14.20180526-1~ndall+1.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libopenal1, libpciaccess0, libusb-1.0-0 (>= 2:1.0.9~), libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.14.20180526-1~ndall+1_amd64.deb Size: 1668418 SHA256: 4157c8080afae28df65fa816248f74b88ddf14a8f5d6af59bf481dc984fd1947 SHA1: bf1cc293ecbf02a9d6c0a38ee257c4610c040963 MD5sum: cce6be301f0e894b1541d1ea65d80f4d Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.14.20180526-1~ndall+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 1783 Depends: octave-psychtoolbox-3 (>= 3.0.14.20180526-1~ndall+1.dfsg), psychtoolbox-3-common (>= 3.0.14.20180526-1~ndall+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.14.20180526-1~ndall+1_amd64.deb Size: 587394 SHA256: 4fb195ed534cbfe1187d199edc64c7dcff40854f9049d63911d835de57a68439 SHA1: 7f0b01b8c2296ebdc724a70e30cc9ae89e126e3f MD5sum: 5a6f1b04e3679375e8e34bcbb03c2ee0 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: python-props Source: props Version: 0.9.14-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 683 Depends: neurodebian-popularity-contest, python-wxgtk3.0, python (>= 2.7), python-sphinx, python-matplotlib, python-six, python-numpy, python-sphinx-rtd-theme, python (<< 2.8) Provides: python2.7-props Priority: optional Section: non-free/python Filename: pool/non-free/p/props/python-props_0.9.14-1~nd70+1_all.deb Size: 147224 SHA256: 7e81d55c8d231004821f617f1b6964d3e3043a75a6ae81c26f5e789d072a4c04 SHA1: 33f42111e8843f44423af9819a8003a5cc048eb7 MD5sum: 551fab3762cb03923e16eebacff22d53 Description: Python descriptor framework Event programming framework with the ability for automatic CLI generation, and automatic GUI generation (with wxPython). . This package provides the Python 2 module. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd70+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3063 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd70+1_all.deb Size: 2051872 SHA256: c9772d066da29f69860ae42cbca9805917dbeb520fb1f7614c49531e47dc66d0 SHA1: 3533625c940936aec15a317cdaaa12adb9e00082 MD5sum: 9ffed1c52f0c7bba4c04bdb549847ed1 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.