Package: bats Version: 1.2.1-3~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 78 Depends: neurodebian-popularity-contest Recommends: parallel Homepage: https://github.com/bats-core/bats-core Priority: optional Section: shells Filename: pool/main/b/bats/bats_1.2.1-3~nd110+1_all.deb Size: 30540 SHA256: 94c99e7ef9649570a2c6ff65f5d779ceabad7693975afed98902e5f1f22ba9a7 SHA1: fa22df3571ac46dd293f57ebac58a980819189c1 MD5sum: 4d9743dac1270efe9f960b9a5f8d23f1 Description: bash automated testing system Bats is a TAP-compliant testing framework for Bash. It provides a simple way to verify that the UNIX programs you write behave as expected. Bats is most useful when testing software written in Bash, but you can use it to test any UNIX program. Package: btrbk Version: 0.31.2-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 402 Depends: neurodebian-popularity-contest, perl, btrfs-progs (>= 4.12) Recommends: openssh-client, mbuffer Suggests: openssl, python3 Homepage: https://digint.ch/btrbk/ Priority: optional Section: utils Filename: pool/main/b/btrbk/btrbk_0.31.2-1~nd110+1_all.deb Size: 115012 SHA256: 53569ca0672c8b095286caf4c5cf199763c71c9701af136b3a8cfc6250c98fb1 SHA1: e03b26a0d863cf2dacc50ad120b8898e65696e51 MD5sum: cd8b537a4ef6e52433ac4eca17f5cc92 Description: backup tool for btrfs subvolumes Backup tool for btrfs subvolumes, using a configuration file, allows creation of backups from multiple sources to multiple destinations, with ssh and flexible retention policy support (hourly, daily, weekly, monthly). Package: datalad Version: 0.14.7-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 187 Depends: neurodebian-popularity-contest, python3-datalad (= 0.14.7-1~nd110+1), python3-argcomplete, python3:any Suggests: datalad-container, datalad-crawler, datalad-neuroimaging Homepage: https://datalad.org Priority: optional Section: science Filename: pool/main/d/datalad/datalad_0.14.7-1~nd110+1_all.deb Size: 147580 SHA256: d3f9c489db97800a32442b72ab962e282b9b5c20982f8c6e820829d2dd97a68f SHA1: 82b6114b9e8406a01fafde3d3509e106ab8df9d6 MD5sum: 784676923bc55e755523bddd9138cb28 Description: data files management and distribution platform DataLad is a data management and distribution platform providing access to a wide range of data resources already available online. Using git-annex as its backend for data logistics it provides following facilities built-in or available through additional extensions . - command line and Python interfaces for manipulation of collections of datasets (install, uninstall, update, publish, save, etc.) and separate files/directories (add, get) - extract, aggregate, and search through various sources of metadata (xmp, EXIF, etc; install datalad-neuroimaging for DICOM, BIDS, NIfTI support) - crawl web sites to automatically prepare and update git-annex repositories with content from online websites, S3, etc (install datalad-crawler) Package: datalad-container Version: 1.1.2-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 116 Depends: neurodebian-popularity-contest, datalad (>= 0.13~), python3-requests (>= 1.2), python3-chardet (>= 3.0.4), python3-datalad, python3:any Recommends: singularity-container Suggests: docker.io Homepage: http://datalad-container.rtfd.org Priority: optional Section: science Filename: pool/main/d/datalad-container/datalad-container_1.1.2-1~nd110+1_all.deb Size: 26508 SHA256: 5261ad57e7bf2913ecbc100b8c704d0601c991b9da5370da84f5536fc58919a6 SHA1: 38db2de6c5d29c729742f770f6510527cb8fe0db MD5sum: 60a11108d7fe503d0533185e98e286e2 Description: DataLad extension for working with containerized environments This extension enhances DataLad (http://datalad.org) for working with computational containers. Package: debhelper Version: 12.1.1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1613 Depends: neurodebian-popularity-contest, autotools-dev, dh-autoreconf (>= 17~), dh-strip-nondeterminism (>= 0.028~), dpkg (>= 1.18.0~), dpkg-dev (>= 1.18.2~), dwz, file (>= 3.23), libdpkg-perl (>= 1.17.14), man-db, po-debconf, perl Suggests: dh-make Breaks: cmake (<< 3.9~), dh-systemd (<< 1.38), meson (<< 0.40.0~) Replaces: dh-systemd (<< 1.38) Provides: debhelper-compat (= 9), debhelper-compat (= 10), debhelper-compat (= 11), debhelper-compat (= 12), dh-sequence-dwz, dh-sequence-installinitramfs, dh-sequence-systemd Multi-Arch: foreign Priority: optional Section: devel Filename: pool/main/d/debhelper/debhelper_12.1.1~nd110+1_all.deb Size: 1016436 SHA256: f8b37b615448defc2ef2764595016aff679c1bc7b600944f9aa9491e4cf66489 SHA1: eace7df6092fca218415e389e123908f6d4f9e47 MD5sum: 92ba1549415c5feb4929b315ba4f038c Description: helper programs for debian/rules A collection of programs that can be used in a debian/rules file to automate common tasks related to building Debian packages. Programs are included to install various files into your package, compress files, fix file permissions, integrate your package with the Debian menu system, debconf, doc-base, etc. Most Debian packages use debhelper as part of their build process. Package: dh-systemd Source: debhelper Version: 12.1.1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 126 Depends: neurodebian-popularity-contest, debhelper (>= 9.20160709) Multi-Arch: foreign Priority: optional Section: oldlibs Filename: pool/main/d/debhelper/dh-systemd_12.1.1~nd110+1_all.deb Size: 122656 SHA256: 5afeb36eae05896e8e76fc7821bb449f2b6f03772e05c4ce6f45c9a1b1ba1ce1 SHA1: 40cd63d3c6d4c75e2e531fd6d771b2e1d0f944c9 MD5sum: a747cc998a474003680527527ffae04c Description: debhelper add-on to handle systemd unit files - transitional package This package is for transitional purposes and can be removed safely. Package: git-all Source: git Version: 1:2.24.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 831 Depends: neurodebian-popularity-contest, git (>> 1:2.24.0), git (<< 1:2.24.0-.), git-doc, git-el, git-cvs, git-mediawiki, git-svn, git-email, git-gui, gitk, gitweb Recommends: git-daemon-run | git-daemon-sysvinit Multi-Arch: foreign Homepage: https://git-scm.com/ Priority: optional Section: vcs Filename: pool/main/g/git/git-all_2.24.0-1~nd110+1_all.deb Size: 834264 SHA256: f0f5ca93771c8e94a1bde29871c4a82632b315377e11bff5c79ae2223cbe5903 SHA1: 2ddb0735422680fb81e84d785e2da43140de0d8a MD5sum: 2e58d5a416c024006e909d201f1e7c22 Description: fast, scalable, distributed revision control system (all subpackages) Git is popular version control system designed to handle very large projects with speed and efficiency; it is used for many high profile open source projects, most notably the Linux kernel. . Git falls in the category of distributed source code management tools. Every Git working directory is a full-fledged repository with full revision tracking capabilities, not dependent on network access or a central server. . This is a dummy package which brings in all subpackages. Package: git-annex-remote-rclone Version: 0.6-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 24 Depends: neurodebian-popularity-contest, git-annex | git-annex-standalone, rclone Homepage: https://github.com/DanielDent/git-annex-remote-rclone Priority: optional Section: utils Filename: pool/main/g/git-annex-remote-rclone/git-annex-remote-rclone_0.6-1~nd110+1_all.deb Size: 8176 SHA256: 103609babbeacd01bafdb429af007ea41ae9f1638d2fc020d2e8d1b1a7df6bb4 SHA1: 2280a6841704c0b91b25260314fe07f9c51c4f3d MD5sum: 8c03c3323e549f1e7c19e4103a17cc4a Description: rclone-based git annex special remote This is a wrapper around rclone to make any destination supported by rclone usable with git-annex. . Cloud storage providers supported by rclone currently include: * Google Drive * Amazon S3 * Openstack Swift / Rackspace cloud files / Memset Memstore * Dropbox * Google Cloud Storage * Microsoft One Drive * Hubic * Backblaze B2 * Yandex Disk . Note: although Amazon Cloud Drive support is implemented, it is broken ATM see https://github.com/DanielDent/git-annex-remote-rclone/issues/22 . Package: git-cvs Source: git Version: 1:2.24.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1212 Depends: neurodebian-popularity-contest, git (>> 1:2.24.0), git (<< 1:2.24.0-.), cvsps, libdbd-sqlite3-perl Suggests: git-doc, cvs Multi-Arch: foreign Homepage: https://git-scm.com/ Priority: optional Section: vcs Filename: pool/main/g/git/git-cvs_2.24.0-1~nd110+1_all.deb Size: 897196 SHA256: 04ede31536eb9b1c0dbee100a9e7cbff4fbb6964d0cea755a2adeca53b7691b0 SHA1: 79b2fe618b33a1789d962a836c47ba635e2bf413 MD5sum: 0982679c449e5461a0f34b3de7f1710e Description: fast, scalable, distributed revision control system (cvs interoperability) Git is popular version control system designed to handle very large projects with speed and efficiency; it is used for many high profile open source projects, most notably the Linux kernel. . Git falls in the category of distributed source code management tools. Every Git working directory is a full-fledged repository with full revision tracking capabilities, not dependent on network access or a central server. . This package provides the git cvsimport, cvsexportcommit, and cvsserver tools, which allow Git to read from and write to CVS repositories and offer access over CVS protocol to Git repositories. . The git cvsimport tool can incrementally import from a repository that is being actively developed and only requires remote access over CVS protocol. Unfortunately, in many situations the import leads to incorrect results. For reliable, one-shot imports, cvs2git from the cvs2svn package or parsecvs may be a better fit. Package: git-daemon-run Source: git Version: 1:2.24.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 843 Depends: neurodebian-popularity-contest, git (>> 1:2.24.0), git (<< 1:2.24.0-.), runit, adduser Conflicts: git-daemon-sysvinit Multi-Arch: foreign Homepage: https://git-scm.com/ Priority: optional Section: vcs Filename: pool/main/g/git/git-daemon-run_2.24.0-1~nd110+1_all.deb Size: 835888 SHA256: c7df90730cebe34a233a7f29ad9698cb388d3e430897af92b94ef6a62318cd52 SHA1: aad6d89536f32ed81f2b1410fa8d9ba5e6a3ee13 MD5sum: 09873a6f07fbdd079c58507bfad5c5a5 Description: fast, scalable, distributed revision control system (git-daemon service) Git is popular version control system designed to handle very large projects with speed and efficiency; it is used for many high profile open source projects, most notably the Linux kernel. . Git falls in the category of distributed source code management tools. Every Git working directory is a full-fledged repository with full revision tracking capabilities, not dependent on network access or a central server. . git-daemon, as provided by the git package, is a simple server for git repositories, ideally suited for read-only updates, i.e. pulling from git repositories through the network. This package provides a runit service for running git-daemon permanently. This configuration is simpler and more reliable than git-daemon-sysvinit, at a cost of being less familiar for administrators accustomed to sysvinit. Package: git-daemon-sysvinit Source: git Version: 1:2.24.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 846 Depends: neurodebian-popularity-contest, git (>> 1:2.24.0), git (<< 1:2.24.0-.), adduser, lsb-base (>= 3.0-6) Conflicts: git-daemon-run Multi-Arch: foreign Homepage: https://git-scm.com/ Priority: optional Section: vcs Filename: pool/main/g/git/git-daemon-sysvinit_2.24.0-1~nd110+1_all.deb Size: 836940 SHA256: 3f6a5731eaf2c06ba958dd41ce89d4fcac51c7cae44ed1db9f889e07ff087932 SHA1: d8d606531cf3d102e2784204996fc2bec02a8658 MD5sum: 4e8068dcbf1472e9d4d2541bee3717e4 Description: fast, scalable, distributed revision control system (git-daemon service) Git is popular version control system designed to handle very large projects with speed and efficiency; it is used for many high profile open source projects, most notably the Linux kernel. . Git falls in the category of distributed source code management tools. Every Git working directory is a full-fledged repository with full revision tracking capabilities, not dependent on network access or a central server. . git-daemon, as provided by the git package, is a simple server for git repositories, ideally suited for read-only updates, i.e. pulling from git repositories through the network. This package provides a sysvinit service for running git-daemon permanently. Unlike git-daemon-run, this package provides the usual sysvinit service management commands ("service git-daemon start/stop") for git-daemon. Package: git-doc Source: git Version: 1:2.24.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 11642 Depends: neurodebian-popularity-contest Suggests: git, git-cvs, git-svn, git-email, gitk, gitweb Multi-Arch: foreign Homepage: https://git-scm.com/ Priority: optional Section: doc Filename: pool/main/g/git/git-doc_2.24.0-1~nd110+1_all.deb Size: 1837148 SHA256: c7be1f7f970e54e2cc2875e599e50f1a858ae029b1e17b308255793649414441 SHA1: 25b5637ea52e0100054c4e8ddec0f54288910bdf MD5sum: 1d74636d4c9a362c257f858f8da3ca58 Description: fast, scalable, distributed revision control system (documentation) Git is popular version control system designed to handle very large projects with speed and efficiency; it is used for many high profile open source projects, most notably the Linux kernel. . Git falls in the category of distributed source code management tools. Every Git working directory is a full-fledged repository with full revision tracking capabilities, not dependent on network access or a central server. . This package provides the documentation. Package: git-el Source: git Version: 1:2.24.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 854 Depends: neurodebian-popularity-contest, git (>= 1:1.7.4.1-2~), emacs | emacsen Recommends: elpa-magit Breaks: git (<< 1:1.7.4.1-2~) Replaces: git (<< 1:1.7.4.1-2~) Multi-Arch: foreign Homepage: https://git-scm.com/ Priority: optional Section: vcs Filename: pool/main/g/git/git-el_2.24.0-1~nd110+1_all.deb Size: 836648 SHA256: 7f774522a6ee8426db9f7371aea83d5934a452ddb514a275c8f9e72c5f2d93a3 SHA1: 1ff86c25be1a0080a4d9c5eaed156852cc028e3c MD5sum: ab8dcea1a6b7d3c829dddc81e73e279a Description: fast, scalable, distributed revision control system (emacs support) Git is popular version control system designed to handle very large projects with speed and efficiency; it is used for many high profile open source projects, most notably the Linux kernel. . Git falls in the category of distributed source code management tools. Every Git working directory is a full-fledged repository with full revision tracking capabilities, not dependent on network access or a central server. . This transitional package provides two modules that previously could be used for integration with Emacs: git.el and git-blame.el. Now the modules print an error message with instructions that users can use to migrate to Emacs's VC-mode backend for Git or Magit. Package: git-email Source: git Version: 1:2.24.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 900 Depends: neurodebian-popularity-contest, git (>> 1:2.24.0), git (<< 1:2.24.0-.) Recommends: libemail-valid-perl, libmailtools-perl, perl (>> 5.21.5) | libnet-smtp-ssl-perl, libauthen-sasl-perl, libio-socket-ssl-perl (>= 1.951) Suggests: git-doc Multi-Arch: foreign Homepage: https://git-scm.com/ Priority: optional Section: vcs Filename: pool/main/g/git/git-email_2.24.0-1~nd110+1_all.deb Size: 859544 SHA256: 5bd20e0218d0b9e3073e700c3846e6cd1cf92e97cb7b89f39e884c5ae8a0b34c SHA1: ed8a6bbd19f966f8c85eeaf6608dd393df762a62 MD5sum: 03865828902819da2fe6553b4588c080 Description: fast, scalable, distributed revision control system (email add-on) Git is popular version control system designed to handle very large projects with speed and efficiency; it is used for many high profile open source projects, most notably the Linux kernel. . Git falls in the category of distributed source code management tools. Every Git working directory is a full-fledged repository with full revision tracking capabilities, not dependent on network access or a central server. . This package provides the git-send-email program for sending series of patch emails. Package: git-gui Source: git Version: 1:2.24.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2313 Depends: neurodebian-popularity-contest, git (>> 1:2.24.0), git (<< 1:2.24.0-.), tk Recommends: gitk Suggests: git-doc, aspell, meld Multi-Arch: foreign Homepage: https://git-scm.com/ Priority: optional Section: vcs Filename: pool/main/g/git/git-gui_2.24.0-1~nd110+1_all.deb Size: 1044552 SHA256: 6d2f7533e8406b5998fc95384f34d1938de034f308c28ffb7b093647c7be7159 SHA1: bf65efa2eea45ae7e95a91e7ae20923bc05d7914 MD5sum: 6ef8045f3e0710441149daa51acbd6b0 Description: fast, scalable, distributed revision control system (GUI) Git is popular version control system designed to handle very large projects with speed and efficiency; it is used for many high profile open source projects, most notably the Linux kernel. . Git falls in the category of distributed source code management tools. Every Git working directory is a full-fledged repository with full revision tracking capabilities, not dependent on network access or a central server. . This package provides the git graphical user interface. . If aspell is installed, it can check the spelling of commit messages as the user types. . If meld is installed, it can be used for displaying diffs and for interactive merge conflict resolution. Package: git-man Source: git Version: 1:2.24.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1748 Depends: neurodebian-popularity-contest Breaks: git (<< 1:1.7.4~rc1) Replaces: git (<< 1:1.7.4~rc1), git-core (<< 1:1.7.0.4-1.) Multi-Arch: foreign Homepage: https://git-scm.com/ Priority: optional Section: doc Filename: pool/main/g/git/git-man_2.24.0-1~nd110+1_all.deb Size: 1695108 SHA256: 27d380bc482184b87b6d9ecbf3006fe7ee84c8ab49d4704611d33755ae1eca17 SHA1: 13342ce1afdee7feb96204e3144776bf37a9af20 MD5sum: 9cb62ace4803624fc29f1853be145e48 Description: fast, scalable, distributed revision control system (manual pages) Git is popular version control system designed to handle very large projects with speed and efficiency; it is used for many high profile open source projects, most notably the Linux kernel. . Git falls in the category of distributed source code management tools. Every Git working directory is a full-fledged repository with full revision tracking capabilities, not dependent on network access or a central server. . This package provides reference documentation for use by the 'man' utility and the 'git help' command. Package: git-mediawiki Source: git Version: 1:2.24.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 890 Depends: neurodebian-popularity-contest, git (>> 1:2.24.0), git (<< 1:2.24.0-.), libmediawiki-api-perl (>= 0.39), liblwp-protocol-https-perl, libdatetime-format-iso8601-perl Suggests: mediawiki Multi-Arch: foreign Homepage: https://git-scm.com/ Priority: optional Section: vcs Filename: pool/main/g/git/git-mediawiki_2.24.0-1~nd110+1_all.deb Size: 850228 SHA256: f0675d1ce83f42a0517ac455c99e2be9d10aa009e9303bbc3ad9909a6f58086b SHA1: 8bb98eec61d502924a29dcfa46df42aca4436757 MD5sum: f88a442eaa77545a75ec9c8eebb9add8 Description: fast, scalable, distributed revision control system (MediaWiki remote helper) Git is popular version control system designed to handle very large projects with speed and efficiency; it is used for many high profile open source projects, most notably the Linux kernel. . Git falls in the category of distributed source code management tools. Every Git working directory is a full-fledged repository with full revision tracking capabilities, not dependent on network access or a central server. . This package provides the mediawiki remote helper, which allows Git to read from and write to a wiki such as Wikipedia as though it were a remote Git repository, and a 'git mw' command that can show a preview of how wiki markup will be rendered before pushing. Package: git-svn Source: git Version: 1:2.24.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1077 Depends: neurodebian-popularity-contest, git (>> 1:2.24.0), git (<< 1:2.24.0-.), libsvn-perl, libyaml-perl, libterm-readkey-perl Suggests: git-doc, subversion Breaks: git (<< 1:1.8.3~rc1-1.) Replaces: git (<< 1:1.8.3~rc1-1.) Multi-Arch: foreign Homepage: https://git-scm.com/ Priority: optional Section: vcs Filename: pool/main/g/git/git-svn_2.24.0-1~nd110+1_all.deb Size: 909468 SHA256: 274543dbce13a6f8ab9fd1699a138a414dfa7ece4eb8bc4bb037619c1369a59b SHA1: 39f89c6079afb71377927de0930410e5cfda087e MD5sum: ef78cd0f271a33a30ce2be2f69094c60 Description: fast, scalable, distributed revision control system (svn interoperability) Git is popular version control system designed to handle very large projects with speed and efficiency; it is used for many high profile open source projects, most notably the Linux kernel. . Git falls in the category of distributed source code management tools. Every Git working directory is a full-fledged repository with full revision tracking capabilities, not dependent on network access or a central server. . This package provides tools for interoperating with Subversion repositories, and importing SVN development history. Package: gitk Source: git Version: 1:2.24.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1612 Depends: neurodebian-popularity-contest, git (>> 1:2.24.0), git (<< 1:2.24.0-.), tk Suggests: git-doc Multi-Arch: foreign Homepage: https://git-scm.com/ Priority: optional Section: vcs Filename: pool/main/g/git/gitk_2.24.0-1~nd110+1_all.deb Size: 969448 SHA256: 5faa1d089dfd44b2ceab09e734f6aa771396046b766d3e5c6a637766fbbd44c3 SHA1: 09ec79e47505ede3530b313137ad2b738289ec6c MD5sum: 21244a2175f6afae06723c491776817c Description: fast, scalable, distributed revision control system (revision tree visualizer) Git is popular version control system designed to handle very large projects with speed and efficiency; it is used for many high profile open source projects, most notably the Linux kernel. . Git falls in the category of distributed source code management tools. Every Git working directory is a full-fledged repository with full revision tracking capabilities, not dependent on network access or a central server. . This package provides the gitk program, a tcl/tk revision tree visualizer. Package: gitweb Source: git Version: 1:2.24.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 853 Depends: neurodebian-popularity-contest, git (>> 1:2.24.0), git (<< 1:2.24.0-.), perl, libcgi-pm-perl Recommends: apache2 (>= 2.4.6-4~) | lynx | httpd, libhttp-date-perl | libtime-parsedate-perl Suggests: httpd-cgi | libcgi-fast-perl, git-doc Breaks: apache2.2-common (<< 2.3~) Multi-Arch: foreign Homepage: https://git-scm.com/ Priority: optional Section: vcs Filename: pool/main/g/git/gitweb_2.24.0-1~nd110+1_all.deb Size: 838528 SHA256: 6caefee972cc58aadeff10861e48d715ccf7587813a4131f22ceb96eafa36715 SHA1: ac74e8f0880876c35f30eba753551eefbfb3fee0 MD5sum: 815525c79a883d14841d331a3a5003dd Description: fast, scalable, distributed revision control system (web interface) Git is popular version control system designed to handle very large projects with speed and efficiency; it is used for many high profile open source projects, most notably the Linux kernel. . Git falls in the category of distributed source code management tools. Every Git working directory is a full-fledged repository with full revision tracking capabilities, not dependent on network access or a central server. . This package configures a web interface for browsing git repositories. . If apache2 is installed, the web interface is automatically made available at http://localhost/gitweb. Other servers that support CGI or mod_perl are supported through manual configuration. . If libcgi-fast-perl is installed, gitweb can also be run over FastCGI (and served by nginx, for example). Package: heudiconv Version: 0.9.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1130 Depends: neurodebian-popularity-contest, dcm2niix, python, python3-dcmstack, python3-dicom, python3-filelock, python3-nibabel, python3-numpy, python3-nipype (>= 1.2.3~) Recommends: python3-pytest, python3-datalad, python3-etelemetry Homepage: https://github.com/nipy/heudiconv Priority: optional Section: science Filename: pool/main/h/heudiconv/heudiconv_0.9.0-1~nd110+1_all.deb Size: 273908 SHA256: 479363da611f1286db642255bf30ffe5cea833bae8ae84974489233b874dcd1f SHA1: d6e427cfd00647ef49ddb20b78d9b9f7cc1a368a MD5sum: 6a631f2a16dd53a8ce0d3fc5d9495a4b Description: DICOM converter with support for structure heuristics This is a flexible dicom converter for organizing brain imaging data into structured directory layouts. It allows for flexible directory layouts and naming schemes through customizable heuristics implementations. It only converts the necessary dicoms, not everything in a directory. It tracks the provenance of the conversion from dicom to nifti in w3c prov format. Package: impressive Version: 0.13.0~beta2-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 490 Depends: neurodebian-popularity-contest, python3, python3-pygame, python3-pil, mupdf-tools (>= 1.5) | poppler-utils Recommends: mplayer, ffmpeg, perl, xdg-utils Suggests: ghostscript, latex-beamer, pdftk Conflicts: keyjnote (<< 0.10.2r-0) Replaces: keyjnote (<< 0.10.2r-0) Provides: keyjnote Homepage: http://impressive.sourceforge.net/ Priority: optional Section: x11 Filename: pool/main/i/impressive/impressive_0.13.0~beta2-1~nd110+1_all.deb Size: 195224 SHA256: f69591a18314aa61be82c0cc400327812ac2acddd1e7f841661edbb35aed3b7e SHA1: 551ff111a239f04ca586bc8686a19c3a95dc5e5c MD5sum: 4fb04bab72ba72c4b8591b007409bac3 Description: PDF presentation tool with eye candies Impressive is a program that displays presentation slides using OpenGL. Smooth alpha-blended slide transitions are provided for the sake of eye candy, but in addition to this, Impressive offers some unique tools that are really useful for presentations. Some of them are: * Overview screen * Highlight boxes * Spotlight effect * Presentation scripting and customization * Support of movies presentation * Active hyperlinks within PDFs Package: libghc-filepath-bytestring-doc Source: haskell-filepath-bytestring Version: 1.4.2.1.6-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 536 Depends: neurodebian-popularity-contest, haddock-interface-33 Recommends: ghc-doc, libjs-mathjax Homepage: https://hackage.haskell.org/package/filepath-bytestring Priority: optional Section: doc Filename: pool/main/h/haskell-filepath-bytestring/libghc-filepath-bytestring-doc_1.4.2.1.6-1~nd110+1_all.deb Size: 61700 SHA256: 842b4573fc9dfdfd4bde21fb3ff4e6907bf18da92850512cb993bc8d1c4b7547 SHA1: aa489ffb4e2a2e4bd0e53e815a42bef02bb78c71 MD5sum: dd9e5b0177f3604ae3859be49a32cf94 Description: library for manipulating RawFilePaths; documentation This package provides functionality for manipulating RawFilePath values. It can be used as a drop in replacement for the filepath library to get the benefits of using ByteStrings. It provides three modules: . * "System.FilePath.Posix.ByteString" manipulates POSIX/Linux style RawFilePath values (with / as the path separator). . * "System.FilePath.Windows.ByteString" manipulates Windows style RawFilePath values (with either \ or / as the path separator, and deals with drives). . * "System.FilePath.ByteString" is an alias for the module appropriate to your platform. . All three modules provide the same API, and the same documentation (calling out differences in the different variants). . This package provides the documentation for a library for the Haskell programming language. See http://www.haskell.org/ for more information on Haskell. Package: libglm-dev Source: glm Version: 0.9.9.6-1+nd1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 2159 Depends: neurodebian-popularity-contest Multi-Arch: foreign Homepage: https://glm.g-truc.net/ Priority: optional Section: libdevel Filename: pool/main/g/glm/libglm-dev_0.9.9.6-1+nd1~nd110+1_all.deb Size: 175968 SHA256: d77a73a63a6e04c86e024faf3f686d3f604a6f9855e5804a513950c5d3dfc59b SHA1: c24aeae1f4b55c78691dccd01209db4f3587785a MD5sum: b189c5265e3b10278fd4de3c1ff95ae4 Description: C++ library for OpenGL GLSL type-based mathematics OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specification. . GLM provides classes and functions designed and implemented with the same naming conventions and functionalities as GLSL, so that when a programmer knows GLSL, he knows GLM as well, which makes it really easy to use. . This project isn't limited to GLSL features. An extension system, based on the GLSL extension conventions, provides extended capabilities: matrix transformations, quaternions, half-based types, random numbers, et cetera. . This library works perfectly together with OpenGL but it also ensures interoperability with other third party libraries and SDKs. It is a good candidate for software rendering (such as raytracing, rasterisation), image processing, physic simulations and any context that requires a simple and convenient mathematics library. Package: libglm-doc Source: glm Version: 0.9.9.6-1+nd1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 12702 Depends: neurodebian-popularity-contest Recommends: libjs-jquery Multi-Arch: foreign Homepage: https://glm.g-truc.net/ Priority: optional Section: doc Filename: pool/main/g/glm/libglm-doc_0.9.9.6-1+nd1~nd110+1_all.deb Size: 499120 SHA256: 749dcb54b906481a72a23a8ee15207334ec3b482fc238574027f63aad836df5c SHA1: ec24b109143880c1607b8ba1b228770a9c86ad75 MD5sum: e206159e93bf8da09e9f4dbed9f97b39 Description: documentation for the OpenGL Mathematics (GLM) library OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specification. . This package contains the OpenGL Mathematics manual in HTML and PDF formats. Package: neurodebian Version: 0.41.0~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 93 Depends: python3, wget, neurodebian-archive-keyring, debconf (>= 0.5) | debconf-2.0 Recommends: netselect Suggests: neurodebian-desktop, neurodebian-popularity-contest Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian_0.41.0~nd110+1_all.deb Size: 34540 SHA256: 16df29f11d650fa1e2bda5926a2511df2100a0ab4beb13b745bb22c0b544852a SHA1: 086e707ea2309abc03c2e03b10e0295379c1209a MD5sum: 293f668133dd807404584c4e25d332f7 Description: neuroscience-oriented distribution - repository configuration The NeuroDebian project integrates and maintains a variety of software projects within Debian that are useful for neuroscience (such as AFNI, FSL, PsychoPy, etc.) or generic computation (such as HTCondor, pandas, etc.). . This package enables the NeuroDebian repository on top of a standard Debian or Ubuntu system. Package: neurodebian-archive-keyring Source: neurodebian Version: 0.41.0~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 24 Depends: gnupg2 | gnupg, dirmngr Breaks: neurodebian-keyring (<< 0.34~) Replaces: neurodebian-keyring (<< 0.34~) Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-archive-keyring_0.41.0~nd110+1_all.deb Size: 11544 SHA256: 6b0c40359b33d48c194240b5f45e08dcb52c112db91bc098bf074ebcdf602a88 SHA1: 92693b9322b8ccb4f2ab807707cec5bbc5e4c2f9 MD5sum: 07ba6e81405d9167a9402bc41eed2bf5 Description: neuroscience-oriented distribution - GnuPG archive keys The NeuroDebian project integrates and maintains a variety of software projects within Debian that are useful for neuroscience (such as AFNI, FSL, PsychoPy, etc.) or generic computation (such as HTCondor, pandas, etc.). . The NeuroDebian project digitally signs its Release files. This package contains the archive keys used for that. Package: neurodebian-desktop Source: neurodebian Version: 0.41.0~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 199 Depends: ssh-askpass-gnome | ssh-askpass, desktop-base, adwaita-icon-theme | gnome-icon-theme, neurodebian-popularity-contest Recommends: reportbug-ng Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-desktop_0.41.0~nd110+1_all.deb Size: 122916 SHA256: 0537f1854024ca69445c1d8ebb529060d7a8cf001f14418d2aad315cb5475d30 SHA1: c964eac4504a81c3c37d41d786cd0c1cea378107 MD5sum: f58ddd54690790b3a50b56bc8fb19703 Description: neuroscience-oriented distribution - desktop integration The NeuroDebian project integrates and maintains a variety of software projects within Debian that are useful for neuroscience (such as AFNI, FSL, PsychoPy, etc.) or generic computation (such as HTCondor, pandas, etc.). . This package provides NeuroDebian artwork (icons, background image) and a NeuroDebian menu featuring the most popular neuroscience tools, which will be automatically installed upon initial invocation. Package: neurodebian-dev Source: neurodebian Version: 0.41.0~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 112 Depends: devscripts, neurodebian-archive-keyring Recommends: python3, zerofree, moreutils, time, debian-archive-keyring, apt-utils, cowbuilder, neurodebian-freeze Suggests: virtualbox-ose, virtualbox-ose-fuse, singularity-container Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-dev_0.41.0~nd110+1_all.deb Size: 34856 SHA256: b56a32d7c3fdfc64fa43665c737a21129ee871f1d00481252f5c1e112572fce2 SHA1: a9bb426d2aa25c783e0352e6a985c5f5caf9396f MD5sum: 406d6ccf1d0b11258d281377b46abfb5 Description: neuroscience-oriented distribution - development tools The NeuroDebian project integrates and maintains a variety of software projects within Debian that are useful for neuroscience (such as AFNI, FSL, PsychoPy, etc.) or generic computation (such as HTCondor, pandas, etc.). . This package provides sources and development tools used by NeuroDebian to provide backports for a range of Debian/Ubuntu releases. Package: neurodebian-freeze Source: neurodebian Version: 0.41.0~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 38 Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-freeze_0.41.0~nd110+1_all.deb Size: 15712 SHA256: 360205446e1b7f852d30dc618d2efacf1f81dc20719b2a19b01fa9ecf1d09638 SHA1: d3872269793d29654e77eae906e3003b4ec9111f MD5sum: cb7f1b6b66aedd60a552828553e47fcf Description: nd_freeze tool to freeze APT sources to use snapshots The NeuroDebian project integrates and maintains a variety of software projects within Debian that are useful for neuroscience (such as AFNI, FSL, PsychoPy, etc.) or generic computation (such as HTCondor, pandas, etc.). . This minimalistic package provides nd_freeze script to be used in rich or minimalistic environments (such as Docker or Singularity recipes) to freeze their APT sources. Intended to assist making such images reproducible. Package: neurodebian-popularity-contest Source: neurodebian Version: 0.41.0~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 28 Depends: popularity-contest Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-popularity-contest_0.41.0~nd110+1_all.deb Size: 13576 SHA256: e50a0c8cd57ce9ea682212dc83e25aea500a77cc3ba66b1a762c5d606f8332f9 SHA1: 1bafd88b004aba3c2249d560aefcd4a1ec64aeb8 MD5sum: d8dcef5c394ee3c35c21b6d8442f9e82 Description: neuroscience-oriented distribution - popcon integration The NeuroDebian project integrates and maintains a variety of software projects within Debian that are useful for neuroscience (such as AFNI, FSL, PsychoPy, etc.) or generic computation (such as HTCondor, pandas, etc.). . This package is a complement to the generic popularity-contest package to enable anonymous submission of usage statistics to NeuroDebian in addition to the popcon submissions to the underlying distribution (either Debian or Ubuntu) popcon server. . Participating in popcon is important for the following reasons: * Popular packages receive more attention from developers; bugs are fixed faster and updates are provided quicker. * It ensures that support is not dropped for a previous release of Debian or Ubuntu while there are active users. * User statistics may be useful for upstream research software developers seeking funding for continued development. . This requires that popcon is activated for the underlying distribution (Debian or Ubuntu), which can be achieved by running "dpkg-reconfigure popularity-contest" as root. Package: nuitka Version: 0.6.16.4+ds-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 9434 Depends: neurodebian-popularity-contest, gcc (>= 5.0) | g++ (>= 4.4) | clang (>= 3.0), scons (>= 2.0.0), python3-appdirs | base-files (<< 7.2), python3-dev, ccache, python3:any (>= 3.3~) Recommends: python3-lxml, python3-tqdm, strace, chrpath, libfuse2 Homepage: https://nuitka.net Priority: optional Section: python Filename: pool/main/n/nuitka/nuitka_0.6.16.4+ds-1~nd110+1_all.deb Size: 1078376 SHA256: c871eabdc713a3a1e80e64a093f7d224b66845cff811b155399193989babc8ed SHA1: d6b99bc271e5758d06acc17ff180f4af0afa9dfe MD5sum: 40f39d2ce8e1b3afb155bdf8cb8f33b8 Description: Python compiler with full language support and CPython compatibility This Python compiler achieves full language compatibility and compiles Python code into compiled objects that are not second class at all. Instead they can be used in the same way as pure Python objects. Package: openstack-pkg-tools Version: 112~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 538 Depends: neurodebian-popularity-contest, python3-pip, gettext, jq, po-debconf Recommends: autopkgtest, madison-lite, pristine-tar Multi-Arch: foreign Priority: optional Section: devel Filename: pool/main/o/openstack-pkg-tools/openstack-pkg-tools_112~nd110+1_all.deb Size: 100588 SHA256: 9ce9fcdfabfb9e9c09c61160089bd19fb0f913cb0efc27c530007df85e29b1a5 SHA1: c852c6d76537873ea75774d32c56f64708997446 MD5sum: 362723fff20e75f4657c59a7199109cb Description: Tools and scripts for building Openstack packages in Debian This package contains some useful shell scripts and helpers for building the OpenStack packages in Debian, including: . * shared code for maintainer scripts (.config, .postinst, ...). * init script templates to automatically generate init scripts for sysv-rc and systemd. * tools to build backports using sbuild and/or Jenkins based on gbp workflow. * utility to maintain git packaging (to be included in a debian/rules). . Even if this package is maintained in order to build OpenStack packages, it is of a general purpose, and it can be used for building any package. Package: psychopy Version: 2020.2.1+dfsg-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 18848 Depends: neurodebian-popularity-contest, python3-freetype, python3-future, python3-gevent, python3-git, python3-gitlab, python3-jedi, python3-json-tricks, python3-matplotlib, python3-msgpack, python3-msgpack-numpy, python3-numpy, python3-opengl, python3-openpyxl, python3-pandas, python3-pil, python3-psutil, python3-requests, python3-scipy, python3-serial, python3-soundfile, python3-tables, python3-websocket, python3-xlrd, python3-yaml, python3-zmq, python3:any, python3-pyglet | python3-pygame, python3-lxml, python3-configobj Recommends: python3-wxgtk4.0, python3-pyglet, python3-pygame, python3-opencv, python3-pyo, python3-xlib, python3-questplus, python3-distro, libxxf86vm1, ipython3, python3-pyxid, python3-cryptography Suggests: python3-iolabs, libavbin0 Conflicts: libavbin0 (= 7-4+b1) Homepage: https://www.psychopy.org Priority: optional Section: science Filename: pool/main/p/psychopy/psychopy_2020.2.1+dfsg-1~nd110+1_all.deb Size: 7066488 SHA256: 12146eb7ec4641d95b5b679f6a8c9df607b26143c9f30abe279aa7eac47a6c0b SHA1: da27f84a107055a732d34b13de92243241f4772d MD5sum: e31adc9e4c870a7f7ce96f67ff698e22 Description: environment for creating psychology stimuli in Python PsychoPy provides an environment for creating psychology stimuli using Python scripting language. It combines the graphical strengths of OpenGL with easy Python syntax to give psychophysics a free and simple stimulus presentation and control package. . The goal is to provide, for the busy scientist, tools to control timing and windowing and a simple set of pre-packaged stimuli and methods. PsychoPy features . - IDE GUI for coding in a powerful scripting language (Python) - Builder GUI for rapid development of stimulation sequences - Use of hardware-accelerated graphics (OpenGL) - Integration with Spectrascan PR650 for easy monitor calibration - Simple routines for staircase and constant stimuli experimental methods as well as curve-fitting and bootstrapping - Simple (or complex) GUIs via wxPython - Easy interfaces to joysticks, mice, sound cards etc. via PyGame - Video playback (MPG, DivX, AVI, QuickTime, etc.) as stimuli Package: psychtoolbox-3-common Source: psychtoolbox-3 Version: 3.0.17.12.dfsg1-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 647926 Depends: neurodebian-popularity-contest Recommends: alsa-utils, gamemode Suggests: gnuplot Homepage: http://psychtoolbox.org Priority: optional Section: science Filename: pool/main/p/psychtoolbox-3/psychtoolbox-3-common_3.0.17.12.dfsg1-1~nd110+1_all.deb Size: 26208276 SHA256: 92bf2995a489bf59309676647f56b0eefd75c6d97804798d1026c2ead3557f6a SHA1: 75cd203164d17e0e8ff2bb44c60ef5add04a578a MD5sum: 0765ac043f782f5ea14931bd52b23db2 Description: toolbox for vision research -- arch/interpreter independent part Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains architecture independent files (such as .m scripts) Package: python-filelock Version: 3.0.12-1+nd1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 36 Depends: neurodebian-popularity-contest, python2:any (<< 2.8), python2:any (>= 2.7~) Homepage: https://github.com/benediktschmitt/py-filelock Priority: optional Section: python Filename: pool/main/p/python-filelock/python-filelock_3.0.12-1+nd1~nd110+1_all.deb Size: 8204 SHA256: b45d1e35c3ba2ac7875ffb518b7709d73b1d8945d54cfc1640526cfc07919cbf SHA1: f5a50338accb9db66d2a66ee9baa51ba5b3702f1 MD5sum: b91725f672a0fa97013a2bf94ca9b480 Description: platform independent file locking module (Python 2) This package contains a single module, which implements a platform independent file locking mechanism for Python. The lock includes a lock counter and is thread safe. This means, when locking the same lock object twice, it will not block. . This package installs the Python 2 version. Package: python-git-doc Source: python-git Version: 3.0.5-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1029 Depends: neurodebian-popularity-contest, libjs-sphinxdoc (>= 1.0), sphinx-rtd-theme-common (>= 0.4.3+dfsg) Breaks: python-git Replaces: python-git Multi-Arch: foreign Homepage: https://github.com/gitpython-developers/GitPython Priority: optional Section: doc Filename: pool/main/p/python-git/python-git-doc_3.0.5-1~nd110+1_all.deb Size: 127192 SHA256: 629383caf68b749f5b2fd3abf7829120eaa104cfb71df02cab1c9df4b2484b22 SHA1: b4fd440098b93079c8b81a4b344fa3e8f97f2355 MD5sum: 564eae03207224fdaa44a8d98164a253 Description: Python library to interact with Git repositories - docs python-git provides object model access to a Git repository, so Python can be used to manipulate it. Repository objects can be opened or created, which can then be traversed to find parent commit(s), trees, blobs, etc. . This package provides the documentation. Package: python-jsonschema-doc Source: python-jsonschema Version: 3.0.2-4~nd1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 553 Depends: neurodebian-popularity-contest, libjs-sphinxdoc (>= 1.0) Homepage: https://github.com/Julian/jsonschema Priority: optional Section: doc Filename: pool/main/p/python-jsonschema/python-jsonschema-doc_3.0.2-4~nd1~nd110+1_all.deb Size: 70604 SHA256: e079622c94818051a31cba17e67cf65460e5b0560887feba3be95f345afe3872 SHA1: a76fa0669c75a483485050c526610d7a5f389013 MD5sum: fa29429206c0f24bc64e36491f3dd21a Description: An(other) implementation of JSON Schema (Draft 3 and 4) - doc JSON Schema is a specification for a JSON-based format for defining the structure of JSON data. JSON Schema provides a contract for what JSON data is required for a given application and how it can be modified, much like what XML Schema provides for XML. JSON Schema is intended to provide validation, documentation, and interaction control of JSON data. . This package provides the documentation. Package: python-nibabel Source: nibabel Version: 2.5.1-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 65854 Depends: neurodebian-popularity-contest, python-numpy, python-six (>= 1.3), python2.7:any, python2:any (<< 2.8), python2:any (>= 2.7~), python-scipy, python-bz2file Recommends: python-dicom, python-fuse Suggests: python-nibabel-doc, python-mock Homepage: http://nipy.sourceforge.net/nibabel Priority: extra Section: python Filename: pool/main/n/nibabel/python-nibabel_2.5.1-1~nd110+1_all.deb Size: 2666172 SHA256: 7a49a8dcd4b5290d442af58f6a7c827a9b504b9f7743590e73c214a3d178e8c5 SHA1: 87a80be532a6bc7ee633185c6897daea53c9fbf1 MD5sum: 155cd628a0e938bd36d9ec72af06d484 Description: Python bindings to various neuroimaging data formats NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. . This package also provides a commandline tools: . - dicomfs - FUSE filesystem on top of a directory with DICOMs - nib-ls - 'ls' for neuroimaging files - parrec2nii - for conversion of PAR/REC to NIfTI images Package: python-nibabel-doc Source: nibabel Version: 3.2.1-2~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 10702 Depends: neurodebian-popularity-contest, libjs-jquery, libjs-mathjax Homepage: https://nipy.org/nibabel/ Priority: optional Section: doc Filename: pool/main/n/nibabel/python-nibabel-doc_3.2.1-2~nd110+1_all.deb Size: 1627560 SHA256: 81f82a73335adbbf44de9f94396491cade72ffd306d3886ffe0771c4f5c042f2 SHA1: 532078abdf3de8a7915e3e9514e9f93f68154b69 MD5sum: 801ebf7305f9b048af799d1b49138716 Description: documentation for NiBabel NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. . This package provides the documentation in HTML format. Package: python-nipy-doc Source: nipy Version: 0.4.3~rc1-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 9614 Depends: neurodebian-popularity-contest, libjs-mathjax, libjs-sphinxdoc (>= 2.4.3-5~) Recommends: python3-nipy Homepage: https://nipy.org/nipy/ Priority: optional Section: doc Filename: pool/main/n/nipy/python-nipy-doc_0.4.3~rc1-1~nd110+1_all.deb Size: 1919908 SHA256: 845ceed5f92f50acbcc5bf8a1564c0ae417a403559314f499eb3e94a0fb48144 SHA1: 28b926f1c26c2c71e887b7e9c8f865a9c45fa272 MD5sum: 11dae404d82d7cf1ed1614a465fe1e1e Description: documentation and examples for NiPy This package contains NiPy documentation in various formats (HTML, TXT) including * User manual * Developer guidelines * API documentation Package: python-nipype-doc Source: nipype Version: 1.6.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 12457 Depends: neurodebian-popularity-contest, libjs-jquery, libjs-underscore Suggests: python3-nipype Homepage: http://nipy.sourceforge.net/nipype/ Priority: optional Section: doc Filename: pool/main/n/nipype/python-nipype-doc_1.6.0-1~nd110+1_all.deb Size: 1255140 SHA256: f6f27810e14334b63650547d3f404e0793ee7bd66c916df68529257a938d978c SHA1: da458d34058d334f555d6cd2b2b356222b52ea47 MD5sum: ae42632054b18b7a0874114a2db8dcd7 Description: Neuroimaging data analysis pipelines in Python3 -- documentation Nipype interfaces Python to other neuroimaging packages and creates an API for specifying a full analysis pipeline in Python. Currently, it has interfaces for SPM, FSL, AFNI, Freesurfer, but could be extended for other packages (such as lipsia). . This package contains Nipype examples and documentation in various formats. Package: python-nitime-doc Source: nitime Version: 0.9-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4101 Depends: neurodebian-popularity-contest, libjs-jquery, libjs-underscore Suggests: python3-nitime Homepage: https://nipy.org/nitime Priority: optional Section: doc Filename: pool/main/n/nitime/python-nitime-doc_0.9-1~nd110+1_all.deb Size: 2396696 SHA256: e9768d3bbd1fc41e5c2d69cac41a5195b5a3e25fd2d92e407a87d1e41d7ba964 SHA1: 93fd08c117631b86f6d452626555255f002197dd MD5sum: de6531a61e6b6c311d5e6bef0e0bd49d Description: timeseries analysis for neuroscience data (nitime) -- documentation Nitime is a Python module for time-series analysis of data from neuroscience experiments. . This package provides the documentation in HTML format. Package: python3-annexremote Source: annexremote Version: 1.4.3-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 71 Depends: neurodebian-popularity-contest, python3-future, python3:any Homepage: https://github.com/Lykos153/AnnexRemote Priority: optional Section: python Filename: pool/main/a/annexremote/python3-annexremote_1.4.3-1~nd110+1_all.deb Size: 13900 SHA256: ffb2776fb9924d93a55b7aad05dd97dec15f4228c2b653ee1963de6c9f0b3a26 SHA1: b877179affb028e5e12446c1d594520ac9e0ed50 MD5sum: 22e301c9aa3e5baec8323bb5246c0e85 Description: abstraction for git-annex special remote implementations Helper module to develop special remotes for git-annex. AnnexRemote handles all the protocol aspects for you, so you can focus on the remote itself. It implements the complete external special remote protocol and fulfils all specifications regarding whitespaces, and order of messages. This is ensured by an extensive test suite. Package: python3-datalad Source: datalad Version: 0.14.7-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 5470 Depends: neurodebian-popularity-contest, git-annex (>= 7.20190503~) | git-annex-standalone (>= 7.20190503~), patool, p7zip-full, python3 (>= 3.6), python3-annexremote, python3-appdirs, python3-distro, python3-distutils | libpython3-stdlib (<= 3.6.4~rc1-2), python3-fasteners (>= 0.14~), python3-gitlab, python3-humanize, python3 (>= 3.8) | python3-importlib-metadata, python3-iso8601, python3-keyring, python3-keyrings.alt | python3-keyring (<= 8), python3-mock, python3-msgpack, python3-pil, python3-requests (>= 1.2), python3-secretstorage, python3-simplejson, python3-six, python3-tqdm, python3-wrapt, python3-chardet, python3:any Recommends: python3-boto, python3-exif, python3-github, python3-html5lib, python3-httpretty, python3-jsmin, python3-libxmp, python3-lzma, python3-mutagen, python3-nose, python3-pyperclip, python3-requests-ftp, python3-vcr, python3-whoosh Suggests: python3-duecredit, datalad-container, datalad-crawler, datalad-neuroimaging, python3-bs4, python3-numpy Breaks: datalad-container (<< 1.1.2) Homepage: https://datalad.org Priority: optional Section: python Filename: pool/main/d/datalad/python3-datalad_0.14.7-1~nd110+1_all.deb Size: 1146936 SHA256: 7476aeae7c81b08442e819170b47aaa74ad5340a68700c624863b81203c56359 SHA1: 6cfb36fbfc93f17a9a99e353ad8451271a675223 MD5sum: 388ae858400ad5f93876ba343ccab668 Description: data files management and distribution platform DataLad is a data management and distribution platform providing access to a wide range of data resources already available online. Using git-annex as its backend for data logistics it provides following facilities built-in or available through additional extensions . - command line and Python interfaces for manipulation of collections of datasets (install, uninstall, update, publish, save, etc.) and separate files/directories (add, get) - extract, aggregate, and search through various sources of metadata (xmp, EXIF, etc; install datalad-neuroimaging for DICOM, BIDS, NIfTI support) - crawl web sites to automatically prepare and update git-annex repositories with content from online websites, S3, etc (install datalad-crawler) . This package installs the module for Python 3, and Recommends install all dependencies necessary for searching and managing datasets, publishing, and testing. If you need base functionality, install without Recommends. Package: python3-dcmstack Source: dcmstack Version: 0.8-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 513 Depends: neurodebian-popularity-contest, python3-dicom (>= 0.9.7~), python3-nibabel (>= 2.0~), python3-numpy, python3-pydicom, python3:any, libjs-sphinxdoc (>= 1.0) Conflicts: python-dcmstack Homepage: https://github.com/moloney/dcmstack Priority: optional Section: science Filename: pool/main/d/dcmstack/python3-dcmstack_0.8-1~nd110+1_all.deb Size: 75200 SHA256: d7914d02c32cb203a7cda0422540844fd55e4c594014e018fe224cb3dc41bb6f SHA1: bc4b866aa3ba3acc28bf50d00b664649b9769ea8 MD5sum: e35b94874ac6951b5eca77e583e0b369 Description: DICOM to NIfTI conversion - python3 package DICOM to NIfTI conversion with the added ability to extract and summarize meta data from the source DICOMs. The meta data can be injected into a NIfTI header extension or written out as a JSON formatted text file. . This package provides the Python3 package. Package: python3-diskcache Source: diskcache Version: 4.0.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 209 Depends: neurodebian-popularity-contest, python3:any Homepage: http://www.grantjenks.com/docs/diskcache/ Priority: optional Section: python Filename: pool/main/d/diskcache/python3-diskcache_4.0.0-1~nd110+1_all.deb Size: 33652 SHA256: 4064bff48742469ce85a20859ec0e3fa9a2220c83fa7458356ca03543743e37d SHA1: 11acb0ba5f0c5588d333a90ad131485016397e58 MD5sum: 496229e62a516f908815a054921c14ae Description: Python module for Disk and file backed persistent cache DiskCache is an Apache2 licensed disk and file backed cache library, written in pure-Python. Its features include . - Django compatible API - Thread-safe and process-safe - Supports multiple eviction policies (LRU and LFU included) - Keys support “tag” metadata and eviction Package: python3-distro Source: python-distro Version: 1.3.0-2~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 63 Depends: neurodebian-popularity-contest, lsb-release, python3:any Homepage: https://github.com/nir0s/distro Priority: optional Section: python Filename: pool/main/p/python-distro/python3-distro_1.3.0-2~nd110+1_all.deb Size: 14568 SHA256: 707c56d95176ea840d82e3e71a845af23d2517c0a91a9063cf216f5d0af6f859 SHA1: d211014f6f7b8d51f83675d29573ffe2460a4e3f MD5sum: c092bdefcfb2020ad8f9d07bc8960488 Description: Linux OS platform information API distro (for: Linux Distribution) provides information about the Linux distribution it runs on, such as a reliable machine-readable ID, or version information. . It is a renewed alternative implementation for Python's original platform.linux_distribution function, but it also provides much more functionality which isn't necessarily Python bound like a command-line interface. . This is the Python 3 version of the library. Package: python3-duecredit Source: duecredit Version: 0.8.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 256 Depends: neurodebian-popularity-contest, python3-citeproc, python3-requests, python3-six, python3:any Homepage: https://github.com/duecredit/duecredit Priority: optional Section: python Filename: pool/main/d/duecredit/python3-duecredit_0.8.0-1~nd110+1_all.deb Size: 58664 SHA256: 6542d3b07f6dd64f0ee0f0fb82369ec0fa46c420fb48074890640b4063340802 SHA1: 9a0892b175a961a753555cb0ededd002632e609c MD5sum: 49383dbaa749a1d942a6f0ed52046762 Description: Publications (and donations) tracer duecredit is being conceived to address the problem of inadequate citation of scientific software and methods, and limited visibility of donation requests for open-source software. . It provides a simple framework (at the moment for Python only) to embed publication or other references in the original code so they are automatically collected and reported to the user at the necessary level of reference detail, i.e. only references for actually used functionality will be presented back if software provides multiple citeable implementations. . To get a sense of what duecredit is about, simply run or your analysis script with `-m duecredit`, e.g. . python3 -m duecredit examples/example_scipy.py Python-Egg-Name: duecredit Package: python3-etelemetry Source: python-etelemetry Version: 0.2.0-2~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 32 Depends: neurodebian-popularity-contest, python3-requests, python3:any Homepage: https://github.com/sensein/etelemetry-client/ Priority: optional Section: python Filename: pool/main/p/python-etelemetry/python3-etelemetry_0.2.0-2~nd110+1_all.deb Size: 6188 SHA256: 2031576c323139cac0f5dbe7eb984a2c99ce14e69790f0503ada98c2980481d0 SHA1: 9746d8e9917e3155bcff8409817e4100c6baa88f MD5sum: ed482722baa128af6f9f68b002233a00 Description: lightweight Python3 client to communicate with the etelemetry server This Python3 package provides a lightweight Python3 client interface to communicate with the etelemetry server. It can be used for nipy or nipype. Package: python3-fasteners Source: python-fasteners Version: 0.14.1-2~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 80 Depends: neurodebian-popularity-contest, python3-monotonic, python3-six, python3:any Homepage: https://github.com/harlowja/fasteners Priority: optional Section: python Filename: pool/main/p/python-fasteners/python3-fasteners_0.14.1-2~nd110+1_all.deb Size: 15424 SHA256: 8843b0fc1f01003f630b9221b08ff44d2e7535d1b489be0bf7019627dfb54959 SHA1: 8e7d225c175cef48de8087e947cf2fefbd899275 MD5sum: e92d7a466ac17b39a52d1aa19f118290 Description: provides useful locks - Python 3.x Fasteners is a Python package that provides useful locks. It includes locking decorator (that acquires instance objects lock(s), acquires on method entry and releases on method exit), reader-writer locks, inter-process locks and generic lock helpers. . This package contains the Python 3.x module. Package: python3-filelock Source: python-filelock Version: 3.0.12-1+nd1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 36 Depends: neurodebian-popularity-contest, python3:any Homepage: https://github.com/benediktschmitt/py-filelock Priority: optional Section: python Filename: pool/main/p/python-filelock/python3-filelock_3.0.12-1+nd1~nd110+1_all.deb Size: 8292 SHA256: 28ed240f834de2836f9e4674e57c4777dd6fa9a816e73e06987448f66d697cd4 SHA1: 8ef7d53fe5b88d0d74b4341db8202920ff03d698 MD5sum: 9948c3a376248b61ca5f78de69d983d1 Description: platform independent file locking module (Python 3) This package contains a single module, which implements a platform independent file locking mechanism for Python. The lock includes a lock counter and is thread safe. This means, when locking the same lock object twice, it will not block. . This package installs the Python 3 version. Package: python3-git Source: python-git Version: 3.0.5-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 1679 Depends: neurodebian-popularity-contest, git (>= 1:1.7) | git-core (>= 1:1.5.3.7), python3-gitdb (>= 2), python3:any Suggests: python-git-doc Homepage: https://github.com/gitpython-developers/GitPython Priority: optional Section: python Filename: pool/main/p/python-git/python3-git_3.0.5-1~nd110+1_all.deb Size: 308004 SHA256: 0d8a6cbdc7bc7a27d03f1b0af82d2200f0343917376d39fc5ce895b919be206e SHA1: ac61ef4661f0814403116370db033d50babe7f4a MD5sum: 5172b02d680395a765ff004b05e59136 Description: Python library to interact with Git repositories - Python 3.x python-git provides object model access to a Git repository, so Python can be used to manipulate it. Repository objects can be opened or created, which can then be traversed to find parent commit(s), trees, blobs, etc. . This package provides the Python 3.x module. Package: python3-github Source: pygithub Version: 1.43.7-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 916 Depends: neurodebian-popularity-contest, python3-deprecated, python3-jwt, python3-requests, python3:any Conflicts: python3-pygithub Replaces: python3-pygithub Homepage: https://pypi.python.org/pypi/PyGithub Priority: optional Section: python Filename: pool/main/p/pygithub/python3-github_1.43.7-1~nd110+1_all.deb Size: 64632 SHA256: c09d0cedfd4e1ff638d261c2614afd379173f28f6c9c34fac7fae92600213832 SHA1: 33b0d77460cbeb0cddadc9fb161e4aedabdba574 MD5sum: 389f16613d640c323fac27d597baafda Description: Access the full Github API v3 from Python3 This is a Python library to access the Github API v3. With it, you can manage Github resources (repositories, user profiles, organizations, etc.) from Python scripts. . It covers almost the full API and all methods are tested against the real Github site. Package: python3-hdmf Source: hdmf Version: 1.5.4-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 506 Depends: neurodebian-popularity-contest, python3-h5py (>= 2.9~), python3-numpy, python3-pandas, python3-ruamel.yaml, python3-scipy, python3:any, python3-certifi, python3-chardet, python3-idna, python3-dateutil, python3-requests, python3-six, python3-urllib3 Homepage: https://github.com/hdmf-dev/hdmf Priority: optional Section: python Filename: pool/main/h/hdmf/python3-hdmf_1.5.4-1~nd110+1_all.deb Size: 83016 SHA256: 0da1afca7a61a361045bc308ef734496bb3e24e6d8efb8b54d0631e4261e98c1 SHA1: 92a8865f51b2262d2d3de86a5435caf0ad932841 MD5sum: 2012629cd63ccb6423c4e5241709a77b Description: Hierarchical Data Modeling Framework The Hierarchical Data Modeling Framework (HDMF) is a Python package for working with hierarchical data. It provides APIs for specifying data models, reading and writing data to different storage backends, and representing data with Python object. Package: python3-httpretty Source: python-httpretty Version: 0.9.5-6~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 96 Depends: neurodebian-popularity-contest, python3-six, python3-urllib3, python3:any Homepage: https://github.com/gabrielfalcao/httpretty Priority: optional Section: python Filename: pool/main/p/python-httpretty/python3-httpretty_0.9.5-6~nd110+1_all.deb Size: 20220 SHA256: 9dbf88faeb9e93a7d08a4a24fee1598ea8d75c86951977bea779d5d9832a3019 SHA1: e71af20ff71dc92c0d2db7945fcc56a83e0c1cea MD5sum: a64860f3777cfa6b536bde748268d797 Description: HTTP client mock - Python 3.x Once upon a time a Python developer wanted to use a RESTful API, everything was fine but until the day he needed to test the code that hits the RESTful API: what if the API server is down? What if its content has changed ? . Don't worry, HTTPretty is here for you. . This package provides the Python 3.x module. Package: python3-importlib-metadata Source: python-importlib-metadata Version: 1.6.0-2+nd1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 45 Depends: neurodebian-popularity-contest, python3-zipp (>= 0.5), python3:any Homepage: https://gitlab.com/python-devs/importlib_metadata Priority: optional Section: python Filename: pool/main/p/python-importlib-metadata/python3-importlib-metadata_1.6.0-2+nd1~nd110+1_all.deb Size: 10592 SHA256: 3580cb633afb965b18e46d7a3ba70423999fc1327d22168c4f914eab56a00b1c SHA1: 98b7d803b84574ca75ca8e4e54c9da7f1ef6b06e MD5sum: fe913a3ff4d2fd2c5997b138e890278a Description: library to access the metadata for a Python package - Python 3.x Provides an API for accessing an installed package’s metadata, such as its entry points or its top-level name. This functionality intends to replace most uses of pkg_resources entry point API and metadata API. . This package contains Python 3.x module. Package: python3-jsonschema Source: python-jsonschema Version: 3.0.2-4~nd1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 254 Depends: neurodebian-popularity-contest, python3-attr, python3-pkg-resources, python3-setuptools, python3-six (>= 1.11.0), python3-pyrsistent, python3:any Suggests: python-jsonschema-doc Homepage: https://github.com/Julian/jsonschema Priority: optional Section: python Filename: pool/main/p/python-jsonschema/python3-jsonschema_3.0.2-4~nd1~nd110+1_all.deb Size: 45156 SHA256: 563384315ecb0d8a85dad79ddb0aa10f6726cc790c2176618eae5152eb51e8fa SHA1: da3e9c66a0ad80c72de80d708d69e2855ecde942 MD5sum: 3e4873a5910d2298698310286d44335a Description: An(other) implementation of JSON Schema (Draft 3 and 4) - Python 3.x JSON Schema is a specification for a JSON-based format for defining the structure of JSON data. JSON Schema provides a contract for what JSON data is required for a given application and how it can be modified, much like what XML Schema provides for XML. JSON Schema is intended to provide validation, documentation, and interaction control of JSON data. . This package contains the Python 3.x module. Package: python3-neo Source: neo Version: 0.7.2-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3485 Depends: neurodebian-popularity-contest, python3-numpy, python3-quantities, python3:any Recommends: python3-scipy (>= 0.8~), python3-tables (>= 2.2~), libjs-jquery, libjs-underscore Suggests: python3-nose Homepage: http://neuralensemble.org/trac/neo Priority: optional Section: python Filename: pool/main/n/neo/python3-neo_0.7.2-1~nd110+1_all.deb Size: 1309360 SHA256: a648f225bf07f9678c0d5a16f333d1bf2a7dddda7b5b0906a0ffe4929cee3bd7 SHA1: 44734afa69009303db86e70925e6f9cc8cc0daad MD5sum: 66958ad49e2f13d1d97955f8f1ec887e Description: Python IO library for electrophysiological data formats NEO stands for Neural Ensemble Objects and is a project to provide common classes and concepts for dealing with electro-physiological (in vivo and/or simulated) data to facilitate collaborative software/algorithm development. In particular Neo provides: a set a classes for data representation with precise definitions, an IO module with a simple API, documentation, and a set of examples. . NEO offers support for reading data from numerous proprietary file formats (e.g. Spike2, Plexon, AlphaOmega, BlackRock, Axon), read/write support for various open formats (e.g. KlustaKwik, Elan, WinEdr, WinWcp, PyNN), as well as support common file formats, such as HDF5 with Neo-structured content (NeoHDF5, NeoMatlab). . Neo's IO facilities can be seen as a pure-Python and open-source Neuroshare replacement. Package: python3-nibabel Source: nibabel Version: 3.2.1-2~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 65983 Depends: neurodebian-popularity-contest, python3-numpy, python3-packaging, python3:any, python3-scipy, python3-six Recommends: python3-pydicom, python3-fuse Suggests: python-nibabel-doc, python3-mock Breaks: python-nibabel Replaces: python-nibabel Homepage: https://nipy.org/nibabel/ Priority: optional Section: python Filename: pool/main/n/nibabel/python3-nibabel_3.2.1-2~nd110+1_all.deb Size: 2707312 SHA256: cd20db2ab0937c9663bb5ea4bba8276bad65d6944f5478ec3a274953d100ac27 SHA1: da068b7f9b99338842cd910b3d656e81c3e74b87 MD5sum: 9135fd752cace6098b782d8855606892 Description: Python3 bindings to various neuroimaging data formats NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI. Package: python3-nipy Source: nipy Version: 0.4.3~rc1-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 3556 Depends: neurodebian-popularity-contest, python3-numpy, python3-nibabel, python3-scipy, python3-sympy, python3:any, python3-nipy-lib (>= 0.4.3~rc1-1~nd110+1) Recommends: python3-matplotlib, mayavi2 Suggests: python3-mvpa Breaks: python-nipy Replaces: python-nipy Homepage: https://nipy.org/nipy/ Priority: optional Section: python Filename: pool/main/n/nipy/python3-nipy_0.4.3~rc1-1~nd110+1_all.deb Size: 784916 SHA256: 5a4a2bba27e883d30598e4d1b3412e9ab482e3af2c2ffe003e46a4ecdb892138 SHA1: c51cee00b5160919c2cf6da34de9821adb028b02 MD5sum: b1091b9e94783b0f64bf0480dfc880b3 Description: Analysis of structural and functional neuroimaging data NiPy is a Python-based framework for the analysis of structural and functional neuroimaging data. It provides functionality for - General linear model (GLM) statistical analysis - Combined slice time correction and motion correction - General image registration routines with flexible cost functions, optimizers and re-sampling schemes - Image segmentation - Basic visualization of results in 2D and 3D - Basic time series diagnostics - Clustering and activation pattern analysis across subjects - Reproducibility analysis for group studies Package: python3-nipype Source: nipype Version: 1.6.0-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 10712 Depends: neurodebian-popularity-contest, python3-click, python3-dateutil, python3-etelemetry, python3-filelock, python3-networkx, python3-nibabel, python3-numpy, python3-packaging, python3-prov, python3-rdflib, python3-scipy, python3-simplejson, python3-traits, python3:any, python3-funcsigs, python3-future, python3-psutil Recommends: ipython3, python3-pytest, graphviz, python3-xvfbwrapper, mayavi2, python3-mock, python3-pydotplus, python3-pydot, python3-cfflib Suggests: fsl, afni, python3-nipy, slicer, matlab-spm8, python3-pyxnat, mne-python, elastix, ants, python3-pytest-xdist, python3-bids Homepage: http://nipy.sourceforge.net/nipype/ Priority: optional Section: python Filename: pool/main/n/nipype/python3-nipype_1.6.0-1~nd110+1_all.deb Size: 1836928 SHA256: 753e74d829158e5101e1f7b9736e47d8c7b78c33089ce25938dc66e50b290247 SHA1: 10e237d12e1dab2149359e95b2f31ae2cd8a54be MD5sum: 9e3cbdfce7e5c944a8af99f61bc64678 Description: Neuroimaging data analysis pipelines in Python3 Nipype interfaces Python to other neuroimaging packages and creates an API for specifying a full analysis pipeline in Python. Currently, it has interfaces for SPM, FSL, AFNI, Freesurfer, but could be extended for other packages (such as lipsia). Package: python3-nitime Source: nitime Version: 0.9-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 9358 Depends: neurodebian-popularity-contest, cython3, python3-matplotlib, python3-networkx, python3-nibabel, python3-numpy, python3-scipy, python3:any Recommends: python3-nose Homepage: https://nipy.org/nitime Priority: optional Section: python Filename: pool/main/n/nitime/python3-nitime_0.9-1~nd110+1_all.deb Size: 2537136 SHA256: d116f4b3016ab0bcd9d9a336165b3eab8b11427cab98a571d643e2167fe242ab SHA1: e396e90a06c33e610c607256515e486f535ed55b MD5sum: 5e6fd632483d4ee878e7507d77961a98 Description: timeseries analysis for neuroscience data (nitime) Nitime is a Python module for time-series analysis of data from neuroscience experiments. It contains a core of numerical algorithms for time-series analysis both in the time and spectral domains, a set of container objects to represent time-series, and auxiliary objects that expose a high level interface to the numerical machinery and make common analysis tasks easy to express with compact and semantically clear code. Package: python3-pyfakefs Source: python-pyfakefs Version: 4.3.3-1+nd1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 991 Depends: neurodebian-popularity-contest, python3:any Homepage: http://pyfakefs.org/ Priority: optional Section: python Filename: pool/main/p/python-pyfakefs/python3-pyfakefs_4.3.3-1+nd1~nd110+1_all.deb Size: 130284 SHA256: e87729b89c338ae0e1ad13ed137932372690d7f8ba397f85731237c51085ceb9 SHA1: 3bbd1a17952792d5bd16ec7f008fe148998076b8 MD5sum: 15175d7c88c54c1fe02e2923b47e5e9c Description: fake fs that mocks the Python file system modules - Python 3 pyfakefs implements a fake file system that mocks the Python file system modules. Using pyfakefs, your tests operate on a fake file system in memory without touching the real disk. The software under test requires no modification to work with pyfakefs. . This package contains the Python 3.x module. Package: python3-pyglet Source: pyglet Version: 1.4.10-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 5249 Depends: neurodebian-popularity-contest, libavcodec58, libavformat58, libavutil56, libfreetype6, libgdk-pixbuf2.0-0, libgtk2.0-0, libgl1 | libgl1-mesa-swx11, libglu1 | libglu1-mesa, libswresample3, libswscale5, libx11-6, libxext6, libxi6, libxinerama1, libxxf86vm1, python3-future, python3-png, python3:any Recommends: libasound2 | libopenal1, libpulse0 Homepage: http://www.pyglet.org Priority: optional Section: python Filename: pool/main/p/pyglet/python3-pyglet_1.4.10-1~nd110+1_all.deb Size: 1091104 SHA256: 68f8a44b3a85bd2e4f5bfe6480f8fa3b3067d5bef76fdbcabb0f962a4d0b202f SHA1: 7e33ab974547d42230b47fb140509774b6390ab2 MD5sum: fc48472d23579828df94d6560c40e069 Description: cross-platform windowing and multimedia library (Python 3) This library provides an object-oriented programming interface for developing games and other visually-rich applications with Python. pyglet has virtually no external dependencies. For most applications and game requirements, pyglet needs nothing else besides Python, simplifying distribution and installation. It also handles multiple windows and fully aware of multi-monitor setups. . pyglet might be seen as an alternative to PyGame. . This is the Python 3 version. Package: python3-pynwb Source: pynwb Version: 1.2.1-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 711 Depends: neurodebian-popularity-contest, python3-dateutil, python3-h5py (>= 2.9~), python3-hdmf (>= 1.5.4~), python3-numpy, python3-pandas, python3:any Homepage: https://github.com/NeurodataWithoutBorders/pynwb Priority: optional Section: python Filename: pool/main/p/pynwb/python3-pynwb_1.2.1-1~nd110+1_all.deb Size: 72248 SHA256: d91224757fb61718e63bfc705529a7ee8556dca2fe22426914de84b0b3e6df7f SHA1: 7fc6d6ab12654c936773c2d6f75345063a68989f MD5sum: 3b0092f24849c0e8066c2a34147a68dd Description: Python library for working with Neurodata in the NWB format PyNWB is a Python package for working with NWB files. It provides a high-level API for efficiently working with Neurodata stored in the NWB format. . Neurodata Without Borders: Neurophysiology (NWB:N) is a project to develop a unified data format for cellular-based neurophysiology data, focused on the dynamics of groups of neurons measured under a large range of experimental conditions. Package: python3-pyxid Source: pyxid Version: 1.0-4~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 50 Depends: neurodebian-popularity-contest, python3-serial, python3:any, python3 Homepage: https://github.com/cedrus-opensource/pyxid Priority: optional Section: python Filename: pool/main/p/pyxid/python3-pyxid_1.0-4~nd110+1_all.deb Size: 10992 SHA256: 69fcddb42a4d54a9260ed084418827b6c0c945acdc23222c477ef4b9a778f370 SHA1: a96c95d783262b7bbffa22f98caa59931ba7ae33 MD5sum: 3ee81eece761bab2d7ae53abc7a4a78a Description: interface for Cedrus XID and StimTracker devices pyxid is a Python library for interfacing with Cedrus XID (eXperiment Interface Device) and StimTracker devices. XID devices are used in software such as SuperLab, Presentation, and ePrime for receiving input as part of stimulus/response testing experiments. . pyxid handles all of the low level device handling for XID devices in Python projects. Package: python3-quantities Source: python-quantities Version: 0.12.4-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 355 Depends: neurodebian-popularity-contest, python3-numpy, python3:any Suggests: python3-unittest2 Homepage: https://packages.python.org/quantities/ Priority: optional Section: python Filename: pool/main/p/python-quantities/python3-quantities_0.12.4-1~nd110+1_all.deb Size: 57484 SHA256: e6303bd44d7fbe0fe513dc2a41ed0cb9552489c1b6b0a34010d79fb46e9727de SHA1: 3be4c85f0f43890ea46f9cd1608e362a43a52b4a MD5sum: 8ab71cbe060bc8ada322e8c8615e9072 Description: Library for computation of physical quantities with units, based on numpy Quantities is designed to handle arithmetic and conversions of physical quantities, which have a magnitude, dimensionality specified by various units, and possibly an uncertainty. Quantities builds on the popular numpy library and is designed to work with numpy ufuncs, many of which are already supported. Package: python3-rnc2rng Source: rnc2rng Version: 2.6.4-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 58 Depends: neurodebian-popularity-contest, python3-rply, python3:any Homepage: https://github.com/djc/rnc2rng Priority: optional Section: python Filename: pool/main/r/rnc2rng/python3-rnc2rng_2.6.4-1~nd110+1_all.deb Size: 11528 SHA256: 0a19018526186f8b8cdf7ae904bda5f118939c463150bb5e6e9e2602f2dfd4c4 SHA1: 4791478428c1a612e0b4c9a25fdda8bd0de79322 MD5sum: 41b0863a49cecd6564aaadd68c3cdbc0 Description: RELAX NG Compact to regular syntax conversion library Converts RELAX NG schemata in Compact syntax (rnc) to the equivalent schema in the XML-based default RELAX NG syntax. . This package installs the library for Python 3. Package: python3-sphinxcontrib.apidoc Source: python-sphinxcontrib.apidoc Version: 0.3.0-2~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 41 Depends: neurodebian-popularity-contest, python3-pbr, python3-sphinx, python3:any Homepage: https://github.com/sphinx-contrib/apidoc Priority: optional Section: python Filename: pool/main/p/python-sphinxcontrib.apidoc/python3-sphinxcontrib.apidoc_0.3.0-2~nd110+1_all.deb Size: 8044 SHA256: ec706fbffd1c647dd264e7f1f55541776b5553e5094e0c819ebffbe6bdbbfe14 SHA1: d673a0a52cc3837f3cc118cc543bf9b3a5606e35 MD5sum: 87e1047d4b5add373bb2919e40f4a435 Description: Sphinx extension for running 'sphinx-apidoc' on each build - Python 3.x sphinx-apidoc is a tool for automatic generation of Sphinx sources that, using the autodoc sphinx_autodoc extension, documents a whole package in the style of other automatic API documentation tools. sphinx-apidoc does not actually build documentation - rather it simply generates it. As a result, it must be run before sphinx-build. . This package contains the Python 3.x module. Package: python3-zipp Source: python-zipp Version: 1.0.0-3+nd1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 26 Depends: neurodebian-popularity-contest, python3-more-itertools, python3:any Homepage: https://github.com/jaraco/zipp Priority: optional Section: python Filename: pool/main/p/python-zipp/python3-zipp_1.0.0-3+nd1~nd110+1_all.deb Size: 6332 SHA256: ca451e323a293ebb47b985ba84a507ac7bf5c5d7ae607d5d9765361ab2fd9528 SHA1: ff8efebfe585201a1fa576a8f12010f6267ed11d MD5sum: a9e8b519ae1bc7e28d6a9d0932df1bb2 Description: pathlib-compatible Zipfile object wrapper - Python 3.x A backport of the Path object to older versions of Python. It's pathlib-compatible interface for zip files using zipfile object inside. . This package contains Python 3.x module. Package: s3cmd Version: 2.1.0-2~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 491 Depends: neurodebian-popularity-contest, python3-dateutil, python3-magic, python3:any Homepage: https://s3tools.org/s3cmd Priority: optional Section: utils Filename: pool/main/s/s3cmd/s3cmd_2.1.0-2~nd110+1_all.deb Size: 115764 SHA256: baacd2e4f211d663bd5cbce3107be406b2159b8a417b4aebe06a52c405255808 SHA1: f13d0893a075e8dcee30f27fde2cf42e56297ff5 MD5sum: 820ce65b720ef968ceb4de6d6405201b Description: command-line Amazon S3 client Command-line tool to upload, retrieve and manage data in Amazon S3 service (http://www.amazon.com/s3/), designed for use in scripts. Features: - creating and destroying S3 buckets - uploading and downloading files - listing remote files - removing remote files - synchronizing local directories to S3 buckets - getting various information about buckets and disk usage . s3cmd supports both (US and EU) S3 datacentres. Package: svgtune Version: 0.3.1-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 27 Depends: neurodebian-popularity-contest, python3, python3-lxml Suggests: inkscape Homepage: http://github.com/yarikoptic/svgtune Priority: optional Section: graphics Filename: pool/main/s/svgtune/svgtune_0.3.1-1~nd110+1_all.deb Size: 7576 SHA256: 473711b0293446869ec8015a9a7c825d8ec2a13c99a7aff34826e90c3f7a7c8c SHA1: 05d684c119d9e2186bbca3f4b8ba8f82aa10e671 MD5sum: 9e69823da417d812a53605dd403cddc9 Description: tool to generate a set of .svg files out of a single .svg file svgtune is a little helper to generate a set of .svg files out of a single .svg file, by tuning respective groups/layers visibility, transparency or anything else. . It might come very handy for generation of incremental figures to be embedded into the presentation in any format which inkscape could render using original .svg file (e.g. pdf, png). Package: youtube-dl Version: 2020.06.16.1-1~nd110+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 5650 Depends: neurodebian-popularity-contest, python3-pkg-resources, python3:any Recommends: aria2 | wget | curl, ca-certificates, ffmpeg | libav-tools, mpv | mplayer, python3-pyxattr, rtmpdump Suggests: libfribidi-bin | bidiv, phantomjs Homepage: https://ytdl-org.github.io/youtube-dl/ Priority: optional Section: web Filename: pool/main/y/youtube-dl/youtube-dl_2020.06.16.1-1~nd110+1_all.deb Size: 1068588 SHA256: 025a359a749d5d7cc3d69fcd2267688a765b198686fae4d9b5e6ab5adf9842e2 SHA1: 521f23c6f8d6c28063e920f9cac37a7661a8cead MD5sum: 2604477074c94e28641010022d0667c8 Description: downloader of videos from YouTube and other sites youtube-dl is a small command-line program to download videos from YouTube.com and other sites that don't provide direct links to the videos served. . youtube-dl allows the user, among other things, to choose a specific video quality to download (if available) or let the program automatically determine the best (or worst) quality video to grab. It supports downloading entire playlists and all videos from a given user. . Currently supported sites (or features of sites) are: . 1tv, 1up.com, 20min, 220.ro, 23video, 24video, 3qsdn, 3sat, 4tube, 56.com, 5min, 6play, 7plus, 8tracks, 91porn, 9c9media, 9gag, 9now.com.au, abc.net.au, abc.net.au:iview, abcnews, abcnews:video, abcotvs, abcotvs:clips, AcademicEarth:Course, acast, acast:channel, AddAnime, ADN, AdobeConnect, AdobeTV, AdobeTVChannel, AdobeTVShow, AdobeTVVideo, AdultSwim, aenetworks, afreecatv, AirMozilla, AliExpressLive, AlJazeera, Allocine, AlphaPorno, AMCNetworks, AmericasTestKitchen, anderetijden, AnimeOnDemand, Anvato, aol.com, APA, Aparat, AppleConnect, AppleDaily, appletrailers, appletrailers:section, archive.org, ARD, ARD:mediathek, ARDBetaMediathek, Arkena, arte.tv:+7, arte.tv:embed, arte.tv:playlist, AsianCrush, AsianCrushPlaylist, AtresPlayer, ATTTechChannel, ATVAt, AudiMedia, AudioBoom, audiomack, audiomack:album, AWAAN, awaan:live, awaan:season, awaan:video, AZMedien, BaiduVideo, bambuser, bambuser:channel, Bandcamp, Bandcamp:album, Bandcamp:weekly, bangumi.bilibili.com, bbc, bbc.co.uk, bbc.co.uk:article, bbc.co.uk:iplayer:playlist, bbc.co.uk:playlist, BBVTV, Beatport, Beeg, BehindKink, Bellator, BellMedia, Bet, bfi:player, Bigflix, Bild, BiliBili, BilibiliAudio, BilibiliAudioAlbum, BioBioChileTV, BIQLE, BitChute, BitChuteChannel, BleacherReport, BleacherReportCMS, blinkx, Bloomberg, BokeCC, BostonGlobe, Bpb, BR, BravoTV, Break, brightcove:legacy, brightcove:new, BRMediathek, bt:article, bt:vestlendingen, BusinessInsider, BuzzFeed, BYUtv, Camdemy, CamdemyFolder, CamModels, CamTube, CamWithHer, canalc2.tv, Canalplus, Canvas, CanvasEen, CarambaTV, CarambaTVPage, CartoonNetwork, cbc.ca, cbc.ca:olympics, cbc.ca:player, cbc.ca:watch, cbc.ca:watch:video, CBS, CBSInteractive, CBSLocal, cbsnews, cbsnews:embed, cbsnews:livevideo, CBSSports, CCMA, CCTV, CDA, CeskaTelevize, CeskaTelevizePorady, channel9, CharlieRose, Chaturbate, Chilloutzone, chirbit, chirbit:profile, Cinchcast, Cinemax, CiscoLiveSearch, CiscoLiveSession, CJSW, cliphunter, Clippit, ClipRs, Clipsyndicate, CloserToTruth, CloudflareStream, Cloudy, Clubic, Clyp, cmt.com, CNBC, CNBCVideo, CNN, CNNArticle, CNNBlogs, ComCarCoff, ComedyCentral, ComedyCentralFullEpisodes, ComedyCentralShortname, ComedyCentralTV, CommonMistakes, CondeNast, Corus, Coub, Cracked, Crackle, CrooksAndLiars, crunchyroll, crunchyroll:playlist, CSNNE, CSpan, CtsNews, CTVNews, cu.ntv.co.jp, Culturebox, CultureUnplugged, curiositystream, curiositystream:collection, CWTV, DailyMail, dailymotion, dailymotion:playlist, dailymotion:user, DaisukiMotto, DaisukiMottoPlaylist, daum.net, daum.net:clip, daum.net:playlist, daum.net:user, DBTV, DctpTv, DeezerPlaylist, defense.gouv.fr, democracynow, DHM, Digg, DigitallySpeaking, Digiteka, Discovery, DiscoveryGo, DiscoveryGoPlaylist, DiscoveryNetworksDe, DiscoveryVR, Disney, dlive:stream, dlive:vod, Dotsub, DouyuShow, DouyuTV, DPlay, DPlayIt, DRBonanza, Dropbox, DrTuber, drtv, drtv:live, DTube, Dumpert, dvtv, dw, dw:article, EaglePlatform, EbaumsWorld, EchoMsk, egghead:course, egghead:lesson, ehftv, eHow, EinsUndEinsTV, Einthusan, eitb.tv, EllenTube, EllenTubePlaylist, EllenTubeVideo, ElPais, Embedly, EMPFlix, Engadget, Eporner, EroProfile, Escapist, ESPN, ESPNArticle, EsriVideo, Europa, EveryonesMixtape, EWETV, ExpoTV, Expressen, ExtremeTube, EyedoTV, facebook, FacebookPluginsVideo, faz.net, fc2, fc2:embed, Fczenit, filmon, filmon:channel, Filmweb, FiveThirtyEight, FiveTV, Flickr, Flipagram, Folketinget, FootyRoom, Formula1, FOX, FOX9, Foxgay, foxnews, foxnews:article, FoxSports, france2.fr:generation-what, FranceCulture, FranceInter, FranceTV, FranceTVEmbed, francetvinfo.fr, FranceTVJeunesse, FranceTVSite, Freesound, freespeech.org, FreshLive, FrontendMasters, FrontendMastersCourse, FrontendMastersLesson, Funimation, Funk, Fusion, Fux, FXNetworks, Gaia, GameInformer, GameOne, gameone:playlist, GameSpot, GameStar, Gaskrank, Gazeta, GDCVault, generic, Gfycat, GiantBomb, Giga, GlattvisionTV, Glide, Globo, GloboArticle, Go, Go90, GodTube, Golem, GoogleDrive, Goshgay, GPUTechConf, Groupon, Hark, hbo, HearThisAt, Heise, HellPorno, Helsinki, HentaiStigma, hetklokhuis, hgtv.com:show, HiDive, HistoricFilms, history:topic, hitbox, hitbox:live, HitRecord, hketv, HornBunny, HotNewHipHop, hotstar, hotstar:playlist, Howcast, HowStuffWorks, HRTi, HRTiPlaylist, Huajiao, HuffPost, Hungama, HungamaSong, Hypem, Iconosquare, ign.com, imdb, imdb:list, Imgur, imgur:album, imgur:gallery, Ina, Inc, IndavideoEmbed, InfoQ, Instagram, instagram:tag, instagram:user, Internazionale, InternetVideoArchive, IPrima, iqiyi, Ir90Tv, ITTF, ITV, ITVBTCC, ivi, ivi:compilation, ivideon, Iwara, Izlesene, Jamendo, JamendoAlbum, JeuxVideo, Joj, Jove, jpopsuki.tv, JWPlatform, Kakao, Kaltura, KanalPlay, Kankan, Karaoketv, KarriereVideos, keek, KeezMovies, Ketnet, KhanAcademy, KickStarter, KinoPoisk, KonserthusetPlay, kontrtube, KrasView, Ku6, KUSI, kuwo:album, kuwo:category, kuwo:chart, kuwo:mv, kuwo:singer, kuwo:song, la7.it, laola1tv, laola1tv:embed, LCI, Lcp, LcpPlay, Le, Learnr, Lecture2Go, Lecturio, LecturioCourse, LecturioDeCourse, LEGO, Lemonde, Lenta, LePlaylist, LetvCloud, Libsyn, life, life:embed, limelight, limelight:channel, limelight:channel_list, LineTV, linkedin:learning, linkedin:learning:course, LinuxAcademy, LiTV, LiveJournal, LiveLeak, LiveLeakEmbed, livestream, livestream:original, livestream:shortener, LnkGo, loc, LocalNews8, LoveHomePorn, lrt.lt, lynda, lynda:course, m6, macgamestore, mailru, mailru:music, mailru:music:search, MakerTV, MallTV, mangomolo:live, mangomolo:video, ManyVids, Markiza, MarkizaPage, massengeschmack.tv, MatchTV, MDR, media.ccc.de, media.ccc.de:lists, Medialaan, Mediaset, Mediasite, MediasiteCatalog, MediasiteNamedCatalog, Medici, megaphone.fm, Meipai, MelonVOD, META, metacafe, Metacritic, Mgoon, MGTV, MiaoPai, Minhateca, MinistryGrid, Minoto, miomio.tv, MiTele, mixcloud, mixcloud:playlist, mixcloud:stream, mixcloud:user, Mixer:live, Mixer:vod, MLB, Mms, Mnet, 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